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Items: 38

1.

Genome of Spea multiplicata, a Rapidly Developing, Phenotypically Plastic, and Desert-Adapted Spadefoot Toad.

Seidl F, Levis NA, Schell R, Pfennig DW, Pfennig KS, Ehrenreich IM.

G3 (Bethesda). 2019 Oct 2. pii: g3.400705.2019. doi: 10.1534/g3.119.400705. [Epub ahead of print]

2.

Variation in hybrid gene expression: Implications for the evolution of genetic incompatibilities in interbreeding species.

Seidl F, Levis NA, Jones CD, Monroy-Eklund A, Ehrenreich IM, Pfennig KS.

Mol Ecol. 2019 Sep 21. doi: 10.1111/mec.15246. [Epub ahead of print]

PMID:
31541560
3.

Layers of Cryptic Genetic Variation Underlie a Yeast Complex Trait.

Lee JT, Coradini ALV, Shen A, Ehrenreich IM.

Genetics. 2019 Apr;211(4):1469-1482. doi: 10.1534/genetics.119.301907. Epub 2019 Feb 20.

4.

The complex underpinnings of genetic background effects.

Mullis MN, Matsui T, Schell R, Foree R, Ehrenreich IM.

Nat Commun. 2018 Sep 17;9(1):3548. doi: 10.1038/s41467-018-06023-5.

5.

The Stress-Inducible Peroxidase TSA2 Underlies a Conditionally Beneficial Chromosomal Duplication in Saccharomyces cerevisiae.

Linder RA, Greco JP, Seidl F, Matsui T, Ehrenreich IM.

G3 (Bethesda). 2017 Sep 7;7(9):3177-3184. doi: 10.1534/g3.117.300069.

6.

Epistasis: Searching for Interacting Genetic Variants Using Crosses.

Ehrenreich IM.

G3 (Bethesda). 2017 Jun 7;7(6):1619-1622. doi: 10.1534/g3.117.042770. No abstract available.

7.

Epistasis: Searching for Interacting Genetic Variants Using Crosses.

Ehrenreich IM.

Genetics. 2017 Jun;206(2):531-535. doi: 10.1534/genetics.117.203059. Review. No abstract available.

8.

Genetic Analysis of Complex Traits in Saccharomyces cerevisiae.

Ehrenreich IM, Magwene PM.

Cold Spring Harb Protoc. 2017 Jun 1;2017(6):pdb.top077602. doi: 10.1101/pdb.top077602.

PMID:
28572210
9.

Genetic Dissection of Heritable Traits in Yeast Using Bulk Segregant Analysis.

Ehrenreich IM, Magwene PM.

Cold Spring Harb Protoc. 2017 Jun 1;2017(6):pdb.prot088989. doi: 10.1101/pdb.prot088989.

PMID:
28572183
10.

Genetic suppression: Extending our knowledge from lab experiments to natural populations.

Matsui T, Lee JT, Ehrenreich IM.

Bioessays. 2017 Jul;39(7). doi: 10.1002/bies.201700023. Epub 2017 May 4. Review.

11.

Genomewide Dam Methylation in Escherichia coli during Long-Term Stationary Phase.

Westphal LL, Sauvey P, Champion MM, Ehrenreich IM, Finkel SE.

mSystems. 2016 Dec 13;1(6). pii: e00130-16. eCollection 2016 Nov-Dec.

12.

Modifiers of the Genotype-Phenotype Map: Hsp90 and Beyond.

Schell R, Mullis M, Ehrenreich IM.

PLoS Biol. 2016 Nov 10;14(11):e2001015. doi: 10.1371/journal.pbio.2001015. eCollection 2016 Nov. Review.

13.

Extreme QTL mapping of germination speed in Arabidopsis thaliana.

Yuan W, Flowers JM, Sahraie DJ, Ehrenreich IM, Purugganan MD.

Mol Ecol. 2016 Sep;25(17):4177-96. doi: 10.1111/mec.13768.

PMID:
27454560
14.

Gene-Environment Interactions in Stress Response Contribute Additively to a Genotype-Environment Interaction.

Matsui T, Ehrenreich IM.

PLoS Genet. 2016 Jul 20;12(7):e1006158. doi: 10.1371/journal.pgen.1006158. eCollection 2016 Jul.

15.

Diverse genetic architectures lead to the same cryptic phenotype in a yeast cross.

Taylor MB, Phan J, Lee JT, McCadden M, Ehrenreich IM.

Nat Commun. 2016 Jun 1;7:11669. doi: 10.1038/ncomms11669.

16.

Multi-locus Genotypes Underlying Temperature Sensitivity in a Mutationally Induced Trait.

Lee JT, Taylor MB, Shen A, Ehrenreich IM.

PLoS Genet. 2016 Mar 18;12(3):e1005929. doi: 10.1371/journal.pgen.1005929. eCollection 2016 Mar.

17.

The complex genetic and molecular basis of a model quantitative trait.

Linder RA, Seidl F, Ha K, Ehrenreich IM.

Mol Biol Cell. 2016 Jan 1;27(1):209-18. doi: 10.1091/mbc.E15-06-0408. Epub 2015 Oct 28.

18.

Transcriptional Derepression Uncovers Cryptic Higher-Order Genetic Interactions.

Taylor MB, Ehrenreich IM.

PLoS Genet. 2015 Oct 20;11(10):e1005606. doi: 10.1371/journal.pgen.1005606. eCollection 2015 Oct.

19.

Genetic assimilation: a review of its potential proximate causes and evolutionary consequences.

Ehrenreich IM, Pfennig DW.

Ann Bot. 2016 Apr;117(5):769-79. doi: 10.1093/aob/mcv130. Epub 2015 Sep 10. Review.

20.

Regulatory Rewiring in a Cross Causes Extensive Genetic Heterogeneity.

Matsui T, Linder R, Phan J, Seidl F, Ehrenreich IM.

Genetics. 2015 Oct;201(2):769-77. doi: 10.1534/genetics.115.180661. Epub 2015 Jul 30.

21.

Higher-order genetic interactions and their contribution to complex traits.

Taylor MB, Ehrenreich IM.

Trends Genet. 2015 Jan;31(1):34-40. doi: 10.1016/j.tig.2014.09.001. Epub 2014 Oct 2. Review.

22.
23.

Genetic interactions involving five or more genes contribute to a complex trait in yeast.

Taylor MB, Ehrenreich IM.

PLoS Genet. 2014 May 1;10(5):e1004324. doi: 10.1371/journal.pgen.1004324. eCollection 2014 May.

24.

Finding the sources of missing heritability in a yeast cross.

Bloom JS, Ehrenreich IM, Loo WT, Lite TL, Kruglyak L.

Nature. 2013 Feb 14;494(7436):234-7. doi: 10.1038/nature11867. Epub 2013 Feb 3.

25.

Genome-wide characterization of genetic variation in the unicellular, green alga Chlamydomonas reinhardtii.

Jang H, Ehrenreich IM.

PLoS One. 2012;7(7):e41307. doi: 10.1371/journal.pone.0041307. Epub 2012 Jul 25.

26.

Climate envelope modelling reveals intraspecific relationships among flowering phenology, niche breadth and potential range size in Arabidopsis thaliana.

Banta JA, Ehrenreich IM, Gerard S, Chou L, Wilczek A, Schmitt J, Kover PX, Purugganan MD.

Ecol Lett. 2012 Aug;15(8):769-77. doi: 10.1111/j.1461-0248.2012.01796.x. Epub 2012 May 15.

PMID:
22583905
27.

Genetic architecture of highly complex chemical resistance traits across four yeast strains.

Ehrenreich IM, Bloom J, Torabi N, Wang X, Jia Y, Kruglyak L.

PLoS Genet. 2012;8(3):e1002570. doi: 10.1371/journal.pgen.1002570. Epub 2012 Mar 15.

28.

Dissection of genetically complex traits with extremely large pools of yeast segregants.

Ehrenreich IM, Torabi N, Jia Y, Kent J, Martis S, Shapiro JA, Gresham D, Caudy AA, Kruglyak L.

Nature. 2010 Apr 15;464(7291):1039-42. doi: 10.1038/nature08923.

29.

Genetic dissection of complex traits in yeast: insights from studies of gene expression and other phenotypes in the BYxRM cross.

Ehrenreich IM, Gerke JP, Kruglyak L.

Cold Spring Harb Symp Quant Biol. 2009;74:145-53. doi: 10.1101/sqb.2009.74.013. Epub 2009 Sep 4. Review.

30.

MicroRNAs in plants: Possible contributions to phenotypic diversity.

Ehrenreich IM, Purugganan M.

Plant Signal Behav. 2008 Oct;3(10):829-30.

31.

A Multiparent Advanced Generation Inter-Cross to fine-map quantitative traits in Arabidopsis thaliana.

Kover PX, Valdar W, Trakalo J, Scarcelli N, Ehrenreich IM, Purugganan MD, Durrant C, Mott R.

PLoS Genet. 2009 Jul;5(7):e1000551. doi: 10.1371/journal.pgen.1000551. Epub 2009 Jul 10.

32.

Candidate gene association mapping of Arabidopsis flowering time.

Ehrenreich IM, Hanzawa Y, Chou L, Roe JL, Kover PX, Purugganan MD.

Genetics. 2009 Sep;183(1):325-35. doi: 10.1534/genetics.109.105189. Epub 2009 Jul 6.

33.

Phenotypic and genotypic characterization of multiple strains of the diazotrophic cyanobacterium, Crocosphaera watsonii, isolated from the open ocean.

Webb EA, Ehrenreich IM, Brown SL, Valois FW, Waterbury JB.

Environ Microbiol. 2009 Feb;11(2):338-48. doi: 10.1111/j.1462-2920.2008.01771.x.

PMID:
19196268
34.

Complex rearrangements lead to novel chimeric gene fusion polymorphisms at the Arabidopsis thaliana MAF2-5 flowering time gene cluster.

Caicedo AL, Richards C, Ehrenreich IM, Purugganan MD.

Mol Biol Evol. 2009 Mar;26(3):699-711. doi: 10.1093/molbev/msn300. Epub 2009 Jan 12.

PMID:
19139056
35.

Sequence variation of MicroRNAs and their binding sites in Arabidopsis.

Ehrenreich IM, Purugganan MD.

Plant Physiol. 2008 Apr;146(4):1974-82. doi: 10.1104/pp.108.116582. Epub 2008 Feb 27.

36.
37.

The molecular genetic basis of plant adaptation.

Ehrenreich IM, Purugganan MD.

Am J Bot. 2006 Jul;93(7):953-62. doi: 10.3732/ajb.93.7.953.

38.

Distribution and diversity of natural product genes in marine and freshwater cyanobacterial cultures and genomes.

Ehrenreich IM, Waterbury JB, Webb EA.

Appl Environ Microbiol. 2005 Nov;71(11):7401-13.

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