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Tempo and mode in coevolution of Agave sensu lato (Agavoideae, Asparagaceae) and its bat pollinators, Glossophaginae (Phyllostomidae).

Flores-Abreu IN, Trejo-Salazar RE, Sánchez-Reyes LL, Good SV, Magallón S, García-Mendoza A, Eguiarte LE.

Mol Phylogenet Evol. 2019 Apr;133:176-188. doi: 10.1016/j.ympev.2019.01.004. Epub 2019 Jan 11.


The Genome of Cucurbita argyrosperma (Silver-Seed Gourd) Reveals Faster Rates of Protein-Coding Gene and Long Noncoding RNA Turnover and Neofunctionalization within Cucurbita.

Barrera-Redondo J, Ibarra-Laclette E, Vázquez-Lobo A, Gutiérrez-Guerrero YT, Sánchez de la Vega G, Piñero D, Montes-Hernández S, Lira-Saade R, Eguiarte LE.

Mol Plant. 2019 Jan 8. pii: S1674-2052(19)30003-6. doi: 10.1016/j.molp.2018.12.023. [Epub ahead of print]


Understanding the Mechanisms Behind the Response to Environmental Perturbation in Microbial Mats: A Metagenomic-Network Based Approach.

De Anda V, Zapata-Peñasco I, Blaz J, Poot-Hernández AC, Contreras-Moreira B, González-Laffitte M, Gámez-Tamariz N, Hernández-Rosales M, Eguiarte LE, Souza V.

Front Microbiol. 2018 Nov 28;9:2606. doi: 10.3389/fmicb.2018.02606. eCollection 2018.


The lost world of Cuatro Ciénegas Basin, a relictual bacterial niche in a desert oasis.

Souza V, Moreno-Letelier A, Travisano M, Alcaraz LD, Olmedo G, Eguiarte LE.

Elife. 2018 Nov 20;7. pii: e38278. doi: 10.7554/eLife.38278.


Nutrient Dependent Cross-Kingdom Interactions: Fungi and Bacteria From an Oligotrophic Desert Oasis.

Velez P, Espinosa-Asuar L, Figueroa M, Gasca-Pineda J, Aguirre-von-Wobeser E, Eguiarte LE, Hernandez-Monroy A, Souza V.

Front Microbiol. 2018 Aug 6;9:1755. doi: 10.3389/fmicb.2018.01755. eCollection 2018.


Historical biogeography and phylogeny of Cucurbita: Insights from ancestral area reconstruction and niche evolution.

Castellanos-Morales G, Paredes-Torres LM, Gámez N, Hernández-Rosales HS, Sánchez-de la Vega G, Barrera-Redondo J, Aguirre-Planter E, Vázquez-Lobo A, Montes-Hernández S, Lira-Saade R, Eguiarte LE.

Mol Phylogenet Evol. 2018 Nov;128:38-54. doi: 10.1016/j.ympev.2018.07.016. Epub 2018 Jul 21.


Experimental and molecular approximation to microbial niche: trophic interactions between oribatid mites and microfungi in an oligotrophic freshwater system.

Velez P, Ojeda M, Espinosa-Asuar L, Pérez TM, Eguiarte LE, Souza V.

PeerJ. 2018 Jul 11;6:e5200. doi: 10.7717/peerj.5200. eCollection 2018.


Evaluation of the Impact of Genetically Modified Cotton After 20 Years of Cultivation in Mexico.

Rocha-Munive MG, Soberón M, Castañeda S, Niaves E, Scheinvar E, Eguiarte LE, Mota-Sánchez D, Rosales-Robles E, Nava-Camberos U, Martínez-Carrillo JL, Blanco CA, Bravo A, Souza V.

Front Bioeng Biotechnol. 2018 Jun 22;6:82. doi: 10.3389/fbioe.2018.00082. eCollection 2018.


Genetic Diversity and Distribution of Blastocystis Subtype 3 in Human Populations, with Special Reference to a Rural Population in Central Mexico.

Rojas-Velázquez L, Morán P, Serrano-Vázquez A, Fernández LD, Pérez-Juárez H, Poot-Hernández AC, Portillo T, González E, Hernández E, Partida-Rodríguez O, Nieves-Ramírez ME, Magaña U, Torres J, Eguiarte LE, Piñero D, Ximénez C.

Biomed Res Int. 2018 Mar 18;2018:3916263. doi: 10.1155/2018/3916263. eCollection 2018.


Genetic Resources in the "Calabaza Pipiana" Squash (Cucurbita argyrosperma) in Mexico: Genetic Diversity, Genetic Differentiation and Distribution Models.

Sánchez-de la Vega G, Castellanos-Morales G, Gámez N, Hernández-Rosales HS, Vázquez-Lobo A, Aguirre-Planter E, Jaramillo-Correa JP, Montes-Hernández S, Lira-Saade R, Eguiarte LE.

Front Plant Sci. 2018 Mar 29;9:400. doi: 10.3389/fpls.2018.00400. eCollection 2018.


The Geographic Structure of Viruses in the Cuatro Ciénegas Basin, a Unique Oasis in Northern Mexico, Reveals a Highly Diverse Population on a Small Geographic Scale.

Taboada B, Isa P, Gutiérrez-Escolano AL, Del Ángel RM, Ludert JE, Vázquez N, Tapia-Palacios MA, Chávez P, Garrido E, Espinosa AC, Eguiarte LE, López S, Souza V, Arias CF.

Appl Environ Microbiol. 2018 May 17;84(11). pii: e00465-18. doi: 10.1128/AEM.00465-18. Print 2018 Jun 1.


Rates of molecular evolution in tree ferns are associated with body size, environmental temperature, and biological productivity.

Barrera-Redondo J, Ramírez-Barahona S, Eguiarte LE.

Evolution. 2018 May;72(5):1050-1062. doi: 10.1111/evo.13475. Epub 2018 Apr 25.


Recent radiation and dispersal of an ancient lineage: The case of Fouquieria (Fouquiericeae, Ericales) in North American deserts.

De-Nova JA, Sánchez-Reyes LL, Eguiarte LE, Magallón S.

Mol Phylogenet Evol. 2018 Sep;126:92-104. doi: 10.1016/j.ympev.2018.03.026. Epub 2018 Mar 21.


Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti.

Copetti D, Búrquez A, Bustamante E, Charboneau JLM, Childs KL, Eguiarte LE, Lee S, Liu TL, McMahon MM, Whiteman NK, Wing RA, Wojciechowski MF, Sanderson MJ.

Proc Natl Acad Sci U S A. 2017 Nov 7;114(45):12003-12008. doi: 10.1073/pnas.1706367114. Epub 2017 Oct 23.


MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle.

De Anda V, Zapata-Peñasco I, Poot-Hernandez AC, Eguiarte LE, Contreras-Moreira B, Souza V.

Gigascience. 2017 Nov 1;6(11):1-17. doi: 10.1093/gigascience/gix096.


Quadrulella texcalense sp. nov. from a Mexican desert: An unexpected new environment for hyalospheniid testate amoebae.

Pérez-Juárez H, Serrano-Vázquez A, Kosakyan A, Mitchell EAD, Rivera Aguilar VM, Lahr DJG, Hernández Moreno MM, Cuellar HM, Eguiarte LE, Lara E.

Eur J Protistol. 2017 Oct;61(Pt A):253-264. doi: 10.1016/j.ejop.2017.06.008. Epub 2017 Jul 17.


Connecting genomic patterns of local adaptation and niche suitability in teosintes.

Aguirre-Liguori JA, Tenaillon MI, Vázquez-Lobo A, Gaut BS, Jaramillo-Correa JP, Montes-Hernandez S, Souza V, Eguiarte LE.

Mol Ecol. 2017 Aug;26(16):4226-4240. doi: 10.1111/mec.14203. Epub 2017 Jul 4.


Nutrient Stoichiometry Shapes Microbial Community Structure in an Evaporitic Shallow Pond.

Lee ZM, Poret-Peterson AT, Siefert JL, Kaul D, Moustafa A, Allen AE, Dupont CL, Eguiarte LE, Souza V, Elser JJ.

Front Microbiol. 2017 May 30;8:949. doi: 10.3389/fmicb.2017.00949. eCollection 2017.


Comparative genomics of free-living Gammaproteobacteria: pathogenesis-related genes or interaction-related genes?

Vázquez-Rosas-Landa M, Ponce-Soto GY, Eguiarte LE, Souza V.

Pathog Dis. 2017 Jul 31;75(5). doi: 10.1093/femspd/ftx059.


High diversity and suggested endemicity of culturable Actinobacteria in an extremely oligotrophic desert oasis.

Arocha-Garza HF, Canales-Del Castillo R, Eguiarte LE, Souza V, De la Torre-Zavala S.

PeerJ. 2017 May 2;5:e3247. doi: 10.7717/peerj.3247. eCollection 2017.


Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples.

Fustier MA, Brandenburg JT, Boitard S, Lapeyronnie J, Eguiarte LE, Vigouroux Y, Manicacci D, Tenaillon MI.

Mol Ecol. 2017 May;26(10):2738-2756. doi: 10.1111/mec.14082. Epub 2017 Mar 29.


Timing of rapid diversification and convergent origins of active pollination within Agavoideae (Asparagaceae).

McKain MR, McNeal JR, Kellar PR, Eguiarte LE, Pires JC, Leebens-Mack J.

Am J Bot. 2016 Oct;103(10):1717-1729. Epub 2016 Oct 20.


Reproductive ecology and isolation of Psittacanthus calyculatus and P. auriculatus mistletoes (Loranthaceae).

Díaz Infante S, Lara C, Arizmendi MD, Eguiarte LE, Ornelas JF.

PeerJ. 2016 Sep 27;4:e2491. eCollection 2016.


Spatial heterogeneity of physicochemical properties explains differences in microbial composition in arid soils from Cuatro Cienegas, Mexico.

Pajares S, Escalante AE, Noguez AM, García-Oliva F, Martínez-Piedragil C, Cram SS, Eguiarte LE, Souza V.

PeerJ. 2016 Sep 8;4:e2459. doi: 10.7717/peerj.2459. eCollection 2016.


Rates of ecological divergence and body size evolution are correlated with species diversification in scaly tree ferns.

Ramírez-Barahona S, Barrera-Redondo J, Eguiarte LE.

Proc Biol Sci. 2016 Jul 13;283(1834). pii: 20161098. doi: 10.1098/rspb.2016.1098.


Myiarchus flycatchers are the primary seed dispersers of Bursera longipes in a Mexican dry forest.

Almazán-Núñez RC, Eguiarte LE, Arizmendi Mdel C, Corcuera P.

PeerJ. 2016 Jun 15;4:e2126. doi: 10.7717/peerj.2126. eCollection 2016.


Microfungal oasis in an oligotrophic desert: diversity patterns and community structure in three freshwater systems of Cuatro Ciénegas, Mexico.

Velez P, Gasca-Pineda J, Rosique-Gil E, Eguiarte LE, Espinosa-Asuar L, Souza V.

PeerJ. 2016 Jun 2;4:e2064. doi: 10.7717/peerj.2064. eCollection 2016.


Population genetic analysis and bioclimatic modeling in Agave striata in the Chihuahuan Desert indicate higher genetic variation and lower differentiation in drier and more variable environments.

Trejo L, Alvarado-Cárdenas LO, Scheinvar E, Eguiarte LE.

Am J Bot. 2016 Jun;103(6):1020-9. doi: 10.3732/ajb.1500446. Epub 2016 Jun 1.


Phylogeographic analyses and genetic structure illustrate the complex evolutionary history of Phragmites australis in Mexico.

Colin R, Eguiarte LE.

Am J Bot. 2016 May;103(5):876-87. doi: 10.3732/ajb.1500399. Epub 2016 May 4.


Population Genetic Structure of a Widespread Bat-Pollinated Columnar Cactus.

Bustamante E, Búrquez A, Scheinvar E, Eguiarte LE.

PLoS One. 2016 Mar 25;11(3):e0152329. doi: 10.1371/journal.pone.0152329. eCollection 2016.


Genomic variation in recently collected maize landraces from Mexico.

Arteaga MC, Moreno-Letelier A, Mastretta-Yanes A, Vázquez-Lobo A, Breña-Ochoa A, Moreno-Estrada A, Eguiarte LE, Piñero D.

Genom Data. 2015 Nov 7;7:38-45. doi: 10.1016/j.gdata.2015.11.002. eCollection 2016 Mar.


Aquatic bacterial assemblage structure in Pozas Azules, Cuatro Cienegas Basin, Mexico: Deterministic vs. stochastic processes.

Espinosa-Asuar L, Escalante AE, Gasca-Pineda J, Blaz J, Peña L, Eguiarte LE, Souza V.

Int Microbiol. 2015 Jun;18(2):105-15. doi: 10.2436/20.1501.01.240.


Peripatric speciation of an endemic species driven by Pleistocene climate change: The case of the Mexican prairie dog (Cynomys mexicanus).

Castellanos-Morales G, Gámez N, Castillo-Gámez RA, Eguiarte LE.

Mol Phylogenet Evol. 2016 Jan;94(Pt A):171-81. doi: 10.1016/j.ympev.2015.08.027. Epub 2015 Sep 3.


Genetic Variation and Structure in Contrasting Geographic Distributions: Widespread Versus Restricted Black-Tailed Prairie Dogs (Subgenus Cynomys).

Castellanos-Morales G, Ortega J, Castillo-Gámez RA, Sackett LC, Eguiarte LE.

J Hered. 2015;106 Suppl 1:478-90. doi: 10.1093/jhered/esv021.


Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat.

Sanderson MJ, Copetti D, Búrquez A, Bustamante E, Charboneau JL, Eguiarte LE, Kumar S, Lee HO, Lee J, McMahon M, Steele K, Wing R, Yang TJ, Zwickl D, Wojciechowski MF.

Am J Bot. 2015 Jul;102(7):1115-27. doi: 10.3732/ajb.1500184. Epub 2015 Jul 14.


Theoretical analysis of the cost of antagonistic activity for aquatic bacteria in oligotrophic environments.

Aguirre-von-Wobeser E, Eguiarte LE, Souza V, Soberón-Chávez G.

Front Microbiol. 2015 May 27;6:490. doi: 10.3389/fmicb.2015.00490. eCollection 2015.


Enrichment experiment changes microbial interactions in an ultra-oligotrophic environment.

Ponce-Soto GY, Aguirre-von-Wobeser E, Eguiarte LE, Elser JJ, Lee ZM, Souza V.

Front Microbiol. 2015 Apr 1;6:246. doi: 10.3389/fmicb.2015.00246. eCollection 2015.


Apparent similarity, underlying homoplasy: Morphology and molecular phylogeny of the North American clade of Manihot.

Cervantes-Alcayde MA, Olson ME, Olsen KM, Eguiarte LE.

Am J Bot. 2015 Apr;102(4):520-32. doi: 10.3732/ajb.1500063. Epub 2015 Mar 20.


Population expansions shared among coexisting bacterial lineages are revealed by genetic evidence.

Avitia M, Escalante AE, Rebollar EA, Moreno-Letelier A, Eguiarte LE, Souza V.

PeerJ. 2014 Dec 16;2:e696. doi: 10.7717/peerj.696. eCollection 2014.


Do the historical biogeography and evolutionary history of the digenean Margotrema spp. across central Mexico mirror those of their freshwater fish hosts (Goodeinae)?

Martínez-Aquino A, Ceccarelli FS, Eguiarte LE, Vázquez-Domínguez E, de León GP.

PLoS One. 2014 Jul 7;9(7):e101700. doi: 10.1371/journal.pone.0101700. eCollection 2014.


Gypsum soil restriction drives genetic differentiation in Fouquieria shrevei (Fouquieriaceae).

Aguirre-Liguori JA, Scheinvar E, Eguiarte LE.

Am J Bot. 2014 Apr;101(4):730-6. doi: 10.3732/ajb.1400031. Epub 2014 Apr 3.


Beyond aridification: multiple explanations for the elevated diversification of cacti in the New World Succulent Biome.

Hernández-Hernández T, Brown JW, Schlumpberger BO, Eguiarte LE, Magallón S.

New Phytol. 2014 Jun;202(4):1382-97. doi: 10.1111/nph.12752. Epub 2014 Mar 10.


Effective population size, genetic variation, and their relevance for conservation: the bighorn sheep in Tiburon Island and comparisons with managed artiodactyls.

Gasca-Pineda J, Cassaigne I, Alonso RA, Eguiarte LE.

PLoS One. 2013 Oct 11;8(10):e78120. doi: 10.1371/journal.pone.0078120. eCollection 2013.


Two-role model of an interaction network of free-living γ-proteobacteria from an oligotrophic environment.

Aguirre-von-Wobeser E, Soberón-Chávez G, Eguiarte LE, Ponce-Soto GY, Vázquez-Rosas-Landa M, Souza V.

Environ Microbiol. 2014 May;16(5):1366-77. doi: 10.1111/1462-2920.12305. Epub 2013 Nov 6.


Drastic changes in aquatic bacterial populations from the Cuatro Cienegas Basin (Mexico) in response to long-term environmental stress.

Pajares S, Eguiarte LE, Bonilla-Rosso G, Souza V.

Antonie Van Leeuwenhoek. 2013 Dec;104(6):1159-75. doi: 10.1007/s10482-013-0038-7. Epub 2013 Sep 27.


Microbial secondary succession in soil microcosms of a desert oasis in the Cuatro Cienegas Basin, Mexico.

López-Lozano NE, Heidelberg KB, Nelson WC, García-Oliva F, Eguiarte LE, Souza V.

PeerJ. 2013 Mar 5;1:e47. doi: 10.7717/peerj.47. Print 2013.


To converge or not to converge in environmental space: testing for similar environments between analogous succulent plants of North America and Africa.

Alvarado-Cárdenas LO, Martínez-Meyer E, Feria TP, Eguiarte LE, Hernández HM, Midgley G, Olson ME.

Ann Bot. 2013 Jun;111(6):1125-38. doi: 10.1093/aob/mct078. Epub 2013 Apr 9.


Genome size variation in wild and cultivated maize along altitudinal gradients.

Díez CM, Gaut BS, Meca E, Scheinvar E, Montes-Hernandez S, Eguiarte LE, Tenaillon MI.

New Phytol. 2013 Jul;199(1):264-76. doi: 10.1111/nph.12247. Epub 2013 Apr 2.


The role of glacial cycles in promoting genetic diversity in the Neotropics: the case of cloud forests during the Last Glacial Maximum.

Ramírez-Barahona S, Eguiarte LE.

Ecol Evol. 2013 Mar;3(3):725-38. doi: 10.1002/ece3.483. Epub 2013 Jan 25.

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