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A novel lineage of ceftriaxone-resistant Salmonella Typhi from India that is closely related to XDR S. Typhi found in Pakistan.

Sah R, Donovan S, Seth-Smith HMB, Bloemberg G, Wüthrich D, Stephan R, Kataria S, Kumar M, Singla S, Deswal V, Kaur A, Neumayr A, Hinic V, Egli A, Kuenzli E.

Clin Infect Dis. 2019 Dec 20. pii: ciz1204. doi: 10.1093/cid/ciz1204. [Epub ahead of print]


Dissociations of oral foci of infections with infectious complications and survival after haematopoietic stem cell transplantation.

Mauramo M, Grolimund P, Egli A, Passweg J, Halter J, Waltimo T.

PLoS One. 2019 Dec 18;14(12):e0225099. doi: 10.1371/journal.pone.0225099. eCollection 2019.


Bloodstream infection with Candida kefyr/Kluyveromyces marxianus: case report and draft genome.

Seth-Smith HMB, Büchler AC, Hinic V, Medinger M, Widmer AF, Egli A.

Clin Microbiol Infect. 2019 Nov 20. pii: S1198-743X(19)30613-5. doi: 10.1016/j.cmi.2019.11.014. [Epub ahead of print] No abstract available.


Agrobacterium spp. nosocomial outbreak assessment using rapid MALDI-TOF MS based typing, confirmed by whole genome sequencing.

Casanova C, Lo Priore E, Egli A, Seth-Smith HMB, Räber L, Ott D, Pflüger V, Droz S, Marschall J, Sommerstein R.

Antimicrob Resist Infect Control. 2019 Nov 4;8:171. doi: 10.1186/s13756-019-0619-y. eCollection 2019.


Emendation of the Genus Auritidibacter Yassin et al. 2011 and Auritidibacter ignavus Yassin et al. 2011 based on features observed from Canadian and Swiss clinical isolates and whole-genome sequencing analysis.

Bernard KA, Pacheco AL, Burdz T, Wiebe D, Beniac DR, Hiebert SL, Booth TF, Jakopp B, Goldenberger D, Seth-Smith HMB, Egli A, Bernier AM.

Int J Syst Evol Microbiol. 2019 Oct 9. doi: 10.1099/ijsem.0.003719. [Epub ahead of print]


Siblings with typhoid fever: An investigation of intrafamilial transmission, clonality, and antibiotic susceptibility.

Meyer Sauteur PM, Stevens MJA, Paioni P, Wüthrich D, Egli A, Stephan R, Berger C, Bloemberg GV.

Travel Med Infect Dis. 2019 Sep 30:101498. doi: 10.1016/j.tmaid.2019.101498. [Epub ahead of print]


Total serum testosterone and WOMAC pain and function among older men and women with severe knee OA.

Freystaetter G, Fischer K, Orav EJ, Egli A, Theiler R, Münzer T, Felson DT, Bischoff-Ferrari HA.

Arthritis Care Res (Hoboken). 2019 Sep 26. doi: 10.1002/acr.24074. [Epub ahead of print]


Evaluation of Rapid Library Preparation Protocols for Whole Genome Sequencing Based Outbreak Investigation.

Seth-Smith HMB, Bonfiglio F, Cuénod A, Reist J, Egli A, Wüthrich D.

Front Public Health. 2019 Aug 27;7:241. doi: 10.3389/fpubh.2019.00241. eCollection 2019.


Polypharmacy and Kidney Function in Community-Dwelling Adults Age 60 Years and Older: A Prospective Observational Study.

Ernst R, Fischer K, de Godoi Rezende Costa Molino C, Orav EJ, Theiler R, Meyer U, Fischler M, Gagesch M, Ambühl PM, Freystätter G, Egli A, Bischoff-Ferrari HA.

J Am Med Dir Assoc. 2019 Sep 6. pii: S1525-8610(19)30559-6. doi: 10.1016/j.jamda.2019.07.007. [Epub ahead of print]


Impact of alcohol-based hand-gel sanitizer and hand hygiene advice on travellers' diarrhoea and colonization with extended-spectrum beta-lactamase-producing Enterobacteriaceae: A randomised, controlled trial.

Kuenzli E, Jaeger VK, DeCrom S, Sydow V, Muigg V, Frei R, Egli A, Fehr J, Hatz C.

Travel Med Infect Dis. 2019 Sep 6:101475. doi: 10.1016/j.tmaid.2019.101475. [Epub ahead of print]


Whole Genome Sequencing for Surveillance of Diphtheria in Low Incidence Settings.

Seth-Smith HMB, Egli A.

Front Public Health. 2019 Aug 21;7:235. doi: 10.3389/fpubh.2019.00235. eCollection 2019. Review.


Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut.

Bakkeren E, Huisman JS, Fattinger SA, Hausmann A, Furter M, Egli A, Slack E, Sellin ME, Bonhoeffer S, Regoes RR, Diard M, Hardt WD.

Nature. 2019 Sep;573(7773):276-280. doi: 10.1038/s41586-019-1521-8. Epub 2019 Sep 4.


Antibiotic-resistant pathogens in different patient settings and identification of surveillance gaps in Switzerland - a systematic review.

Fulchini R, Albrich WC, Kronenberg A, Egli A, Kahlert CR, Schlegel M, Kohler P.

Epidemiol Infect. 2019 Aug 30;147:e259. doi: 10.1017/S0950268819001523.


Identification of influenza urban transmission patterns by geographical, epidemiological and whole genome sequencing data: protocol for an observational study.

Egli A, Saalfrank C, Goldman N, Brunner M, Hollenstein Y, Vogel T, Augustin N, Wüthrich D, Seth-Smith HMB, Roth E, Syedbasha M, Mueller NF, Vogt D, Bauer J, Amar-Sliwa N, Meinel DM, Dubuis O, Naegele M, Tschudin-Sutter S, Buser A, Nickel CH, Zeller A, Ritz N, Battegay M, Stadler T, Schneider-Sliwa R.

BMJ Open. 2019 Aug 20;9(8):e030913. doi: 10.1136/bmjopen-2019-030913.


Symposium report: One Health meets sequencing.

Egli A, Koch D, Danuser J, Hendriksen RS, Driesen S, Schmid DC, Neher R, Mäusezahl M, Seth-Smith HMB, Bloemberg G, Tschudin-Sutter S, Endimiani A, Perreten V, Greub G, Schrenzel J, Stephan R.

Microbes Infect. 2019 Aug 8. pii: S1286-4579(19)30083-8. doi: 10.1016/j.micinf.2019.07.004. [Epub ahead of print] No abstract available.


Influence of fall environment and fall direction on risk of injury among pre-frail and frail adults.

Gratza SK, Chocano-Bedoya PO, Orav EJ, Fischbacher M, Freystätter G, Theiler R, Egli A, Kressig RW, Kanis JA, Bischoff-Ferrari HA.

Osteoporos Int. 2019 Nov;30(11):2205-2215. doi: 10.1007/s00198-019-05110-7. Epub 2019 Aug 3.


Emerging anaerobic and partially acid-fast Lawsonella clevelandensis: extended characterization by antimicrobial susceptibility testing and whole genome sequencing.

Goldenberger D, Naegele M, Steffens D, Eichenberger R, Egli A, Seth-Smith HMB.

Clin Microbiol Infect. 2019 Nov;25(11):1447-1448. doi: 10.1016/j.cmi.2019.07.008. Epub 2019 Jul 12. No abstract available.


Complete Genome Assembly of an Auritidibacter ignavus Isolate Obtained from an Ear Infection in Switzerland and a Comparison to Global Isolates.

Seth-Smith HMB, Goldenberger D, Bernard KA, Bernier AM, Egli A.

Microbiol Resour Announc. 2019 Jul 11;8(28). pii: e00291-19. doi: 10.1128/MRA.00291-19.


Pharmacodynamics of daptomycin in combination with other antibiotics for the treatment of enterococcal bacteraemia.

Avery LM, Kuti JL, Weisser M, Egli A, Rybak MJ, Zasowski EJ, Arias CA, Contreras GA, Chong PP, Aitken SL, DiPippo AJ, Wang JT, Britt NS, Nicolau DP.

Int J Antimicrob Agents. 2019 Sep;54(3):346-350. doi: 10.1016/j.ijantimicag.2019.07.002. Epub 2019 Jul 5.


Prosthetic valve endocarditis caused by Pseudomonas aeruginosa with variable antibacterial resistance profiles: a diagnostic challenge.

Gürtler N, Osthoff M, Rueter F, Wüthrich D, Zimmerli L, Egli A, Bassetti S.

BMC Infect Dis. 2019 Jun 17;19(1):530. doi: 10.1186/s12879-019-4164-3.


Influence of a resin-based blood culture medium on the time to clearance of methicillin-susceptible Staphylococcus aureus bloodstream infection - A retrospective cohort study.

Gürtler N, Denz A, Egli A, Widmer AF, Osthoff M.

Diagn Microbiol Infect Dis. 2019 Sep;95(1):25-27. doi: 10.1016/j.diagmicrobio.2019.04.010. Epub 2019 May 2.


Effect of 2000 IU compared with 800 IU vitamin D on cognitive performance among adults age 60 years and older: a randomized controlled trial.

Schietzel S, Fischer K, Brugger P, Orav EJ, Renerts K, Gagesch M, Freystaetter G, Stähelin HB, Egli A, Bischoff-Ferrari HA.

Am J Clin Nutr. 2019 Jul 1;110(1):246-253. doi: 10.1093/ajcn/nqz081.


Phenotypic and Genomic Analyses of Burkholderia stabilis Clinical Contamination, Switzerland.

Seth-Smith HMB, Casanova C, Sommerstein R, Meinel DM, Abdelbary MMH, Blanc DS, Droz S, Führer U, Lienhard R, Lang C, Dubuis O, Schlegel M, Widmer A, Keller PM, Marschall J, Egli A.

Emerg Infect Dis. 2019 Jun;25(6):1084-1092. doi: 10.3201/eid2506.172119.


Antigen Extraction and B Cell Activation Enable Identification of Rare Membrane Antigen Specific Human B Cells.

Zimmermann M, Rose N, Lindner JM, Kim H, Gonçalves AR, Callegari I, Syedbasha M, Kaufmann L, Egli A, Lindberg RLP, Kappos L, Traggiai E, Sanderson NSR, Derfuss T.

Front Immunol. 2019 Apr 16;10:829. doi: 10.3389/fimmu.2019.00829. eCollection 2019.


First clinical case of KPC-3-producing Klebsiella michiganensis in Europe.

Seiffert SN, Wüthrich D, Gerth Y, Egli A, Kohler P, Nolte O.

New Microbes New Infect. 2019 Feb 23;29:100516. doi: 10.1016/j.nmni.2019.100516. eCollection 2019 May.


Timeline of functional recovery after hip fracture in seniors aged 65 and older: a prospective observational analysis.

Fischer K, Trombik M, Freystätter G, Egli A, Theiler R, Bischoff-Ferrari HA.

Osteoporos Int. 2019 Jul;30(7):1371-1381. doi: 10.1007/s00198-019-04944-5. Epub 2019 Apr 2.


Quantitative contribution of efflux to multi-drug resistance of clinical Escherichia coli and Pseudomonas aeruginosa strains.

Cunrath O, Meinel DM, Maturana P, Fanous J, Buyck JM, Saint Auguste P, Seth-Smith HMB, Körner J, Dehio C, Trebosc V, Kemmer C, Neher R, Egli A, Bumann D.

EBioMedicine. 2019 Mar;41:479-487. doi: 10.1016/j.ebiom.2019.02.061. Epub 2019 Mar 7.


Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection.

Agnetti J, Seth-Smith HMB, Ursich S, Reist J, Basler M, Nickel C, Bassetti S, Ritz N, Tschudin-Sutter S, Egli A.

BMC Infect Dis. 2019 Mar 7;19(1):237. doi: 10.1186/s12879-019-3858-x.


ESBL-colonization at ICU admission: impact on subsequent infection, carbapenem-consumption, and outcome.

Emmanuel Martinez A, Widmer A, Frei R, Pargger H, Tuchscherer D, Marsch S, Egli A, Tschudin-Sutter S.

Infect Control Hosp Epidemiol. 2019 Apr;40(4):408-413. doi: 10.1017/ice.2019.5. Epub 2019 Feb 21.


Effects of a simple home exercise program and vitamin D supplementation on health-related quality of life after a hip fracture: a randomized controlled trial.

Renerts K, Fischer K, Dawson-Hughes B, Orav EJ, Freystaetter G, Simmen HP, Pape HC, Egli A, Theiler R, Bischoff-Ferrari HA.

Qual Life Res. 2019 May;28(5):1377-1386. doi: 10.1007/s11136-019-02100-4. Epub 2019 Feb 9.


Genomic characterization of inpatient evolution of MRSA resistant to daptomycin, vancomycin and ceftaroline.

Wüthrich D, Cuénod A, Hinic V, Morgenstern M, Khanna N, Egli A, Kuehl R.

J Antimicrob Chemother. 2019 May 1;74(5):1452-1454. doi: 10.1093/jac/dkz003. No abstract available.


Reply to Cheng and Chuang.

Avery LM, Kuti JL, Weisser M, Egli A, Rybak MJ, Zasowski EJ, Arias CA, Contreras GA, Chong PP, Aitken SL, DiPippo AJ, Wang JT, Britt NS, Nicolau DP.

Clin Infect Dis. 2019 Aug 16;69(5):903-904. doi: 10.1093/cid/ciz081. No abstract available.


Effect of Monthly High-Dose Vitamin D on Mental Health in Older Adults: Secondary Analysis of a RCT.

Gugger A, Marzel A, Orav EJ, Willett WC, Dawson-Hughes B, Theiler R, Freystätter G, Egli A, Bischoff-Ferrari HA.

J Am Geriatr Soc. 2019 Jun;67(6):1211-1217. doi: 10.1111/jgs.15808. Epub 2019 Feb 1.


Air-conditioner cooling towers as complex reservoirs and continuous source of Legionella pneumophila infection evidenced by a genomic analysis study in 2017, Switzerland.

Wüthrich D, Gautsch S, Spieler-Denz R, Dubuis O, Gaia V, Moran-Gilad J, Hinic V, Seth-Smith HM, Nickel CH, Tschudin-Sutter S, Bassetti S, Haenggi M, Brodmann P, Fuchs S, Egli A.

Euro Surveill. 2019 Jan;24(4). doi: 10.2807/1560-7917.ES.2019.24.4.1800192.


Association of depression with malnutrition, grip strength and impaired cognitive function among senior trauma patients.

Wiegand A, Zieger A, Staiger RD, Egli A, Freystätter G, Bischoff-Ferrari HA, Chocano-Bedoya PO.

J Affect Disord. 2019 Mar 15;247:175-182. doi: 10.1016/j.jad.2019.01.013. Epub 2019 Jan 15.


Evaluation of two workflows for whole genome sequencing-based typing of influenza A viruses.

Wüthrich D, Lang D, Müller NF, Neher RA, Stadler T, Egli A.

J Virol Methods. 2019 Apr;266:30-33. doi: 10.1016/j.jviromet.2019.01.009. Epub 2019 Jan 21.


Discovery and Characterization of Mycobacterium basiliense sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs.

Seth-Smith HMB, Imkamp F, Tagini F, Cuénod A, Hömke R, Jahn K, Tschacher A, Grendelmeier P, Bättig V, Erb S, Reinhard M, Rütimann G, Borrell S, Gagneux S, Casanova C, Droz S, Osthoff M, Tamm M, Nübel U, Greub G, Keller PM, Egli A.

Front Microbiol. 2019 Jan 8;9:3184. doi: 10.3389/fmicb.2018.03184. eCollection 2018.


Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform.

Egli A, Blanc DS, Greub G, Keller PM, Lazarevic V, Lebrand A, Leib S, Neher RA, Perreten V, Ramette A, Schrenzel J, Stephan R, Wagner K, Wuethrich D, Xenarios I.

Swiss Med Wkly. 2018 Dec 15;148:w14693. doi: 10.4414/smw.2018.14693. eCollection 2018 Dec 3.


Effect of 800 IU Versus 2000 IU Vitamin D3 With or Without a Simple Home Exercise Program on Functional Recovery After Hip Fracture: A Randomized Controlled Trial.

Stemmle J, Marzel A, Chocano-Bedoya PO, Orav EJ, Dawson-Hughes B, Freystaetter G, Egli A, Theiler R, Staehelin HB, Bischoff-Ferrari HA.

J Am Med Dir Assoc. 2019 May;20(5):530-536.e1. doi: 10.1016/j.jamda.2018.10.013. Epub 2018 Dec 11.


High Mortality of Non-Fournier Necrotizing Fasciitis With Enterobacteriales: Time to Rethink Classification?

Kuehl R, Tschudin-Sutter S, Siegemund M, Marsch S, Battegay M, Wetterauer C, Seifert HH, Schaefer DJ, Erb S, Egli A.

Clin Infect Dis. 2019 Jun 18;69(1):147-150. doi: 10.1093/cid/ciy1011.


Association between 25-Hydroxyvitamin D Status and Components of Body Composition and Glucose Metabolism in Older Men and Women.

Mathieu SV, Fischer K, Dawson-Hughes B, Freystaetter G, Beuschlein F, Schietzel S, Egli A, Bischoff-Ferrari HA.

Nutrients. 2018 Nov 25;10(12). pii: E1826. doi: 10.3390/nu10121826.


Basic patient characteristics predict antimicrobial resistance in E. coli from urinary tract specimens: a retrospective cohort analysis of 5246 urine samples.

Erb S, Frei R, Tschudin Sutter S, Egli A, Dangel M, Bonkat G, Widmer AF.

Swiss Med Wkly. 2018 Nov 15;148:w14660. doi: 10.4414/smw.2018.14660. eCollection 2018 Nov 5.


Effect of Monthly Vitamin D on Chronic Pain Among Community-Dwelling Seniors: A Randomized, Double-Blind Controlled Trial.

Schlögl M, Chocano-Bedoya P, Dawson-Hughes B, Orav EJ, Freystaetter G, Theiler R, Kressig RW, Egli A, Bischoff-Ferrari HA.

J Am Med Dir Assoc. 2019 Mar;20(3):356-361. doi: 10.1016/j.jamda.2018.09.004. Epub 2018 Nov 3.


Pharmacodynamic Analysis of Daptomycin-treated Enterococcal Bacteremia: It Is Time to Change the Breakpoint.

Avery LM, Kuti JL, Weisser M, Egli A, Rybak MJ, Zasowski EJ, Arias CA, Contreras GA, Chong PP, Aitken SL, DiPippo AJ, Wang JT, Britt NS, Nicolau DP.

Clin Infect Dis. 2019 May 2;68(10):1650-1657. doi: 10.1093/cid/ciy749.


First report of sexually transmitted multi-drug resistant Shigella sonnei infections in Switzerland, investigated by whole genome sequencing.

Hinic V, Seth-Smith H, Stöckle M, Goldenberger D, Egli A.

Swiss Med Wkly. 2018 Aug 22;148:w14645. doi: smw.2018.14645. eCollection 2018 Aug 13.


Self-associated molecular patterns mediate cancer immune evasion by engaging Siglecs on T cells.

Stanczak MA, Siddiqui SS, Trefny MP, Thommen DS, Boligan KF, von Gunten S, Tzankov A, Tietze L, Lardinois D, Heinzelmann-Schwarz V, von Bergwelt-Baildon M, Zhang W, Lenz HJ, Han Y, Amos CI, Syedbasha M, Egli A, Stenner F, Speiser DE, Varki A, Zippelius A, Läubli H.

J Clin Invest. 2018 Nov 1;128(11):4912-4923. doi: 10.1172/JCI120612. Epub 2018 Sep 24.


Risk factors for colistin-resistant Enterobacteriaceae in a low-endemicity setting for carbapenem resistance - a matched case-control study.

Büchler AC, Gehringer C, Widmer AF, Egli A, Tschudin-Sutter S.

Euro Surveill. 2018 Jul;23(30). doi: 10.2807/1560-7917.ES.2018.23.30.1700777.


Outbreak of vancomycin-resistant Enterococcus faecium clone ST796, Switzerland, December 2017 to April 2018.

Wassilew N, Seth-Smith HM, Rolli E, Fietze Y, Casanova C, Führer U, Egli A, Marschall J, Buetti N.

Euro Surveill. 2018 Jul;23(29). doi: 10.2807/1560-7917.ES.2018.23.29.1800351. Erratum in: Euro Surveill. 2018 Jul;23(30):.


Antibiotic resistance in Swiss nursing homes: analysis of National Surveillance Data over an 11-year period between 2007 and 2017.

Kohler P, Fulchini R, Albrich WC, Egli A, Balmelli C, Harbarth S, Héquet D, Kahlert CR, Kuster SP, Petignat C, Schlegel M, Kronenberg A.

Antimicrob Resist Infect Control. 2018 Jul 20;7:88. doi: 10.1186/s13756-018-0378-1. eCollection 2018.


Recovery after unilateral knee replacement due to severe osteoarthritis and progression in the contralateral knee: a randomised clinical trial comparing daily 2000 IU versus 800 IU vitamin D.

Bischoff-Ferrari HA, Orav EJ, Egli A, Dawson-Hughes B, Fischer K, Staehelin HB, Rizzoli R, Hodler J, von Eckardstein A, Freystaetter G, Meyer U, Guggi T, Burckhardt P, Schietzel S, Chocano-Bedoya P, Theiler R, Willett WC, Felson D.

RMD Open. 2018 Jul 9;4(2):e000678. doi: 10.1136/rmdopen-2018-000678. eCollection 2018.

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