Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 275

1.

Acidobacteria Subgroups and Their Metabolic Potential for Carbon Degradation in Sugarcane Soil Amended With Vinasse and Nitrogen Fertilizers.

de Chaves MG, Silva GGZ, Rossetto R, Edwards RA, Tsai SM, Navarrete AA.

Front Microbiol. 2019 Jul 30;10:1680. doi: 10.3389/fmicb.2019.01680. eCollection 2019.

2.

Flexible Tethering of ASPP Proteins Facilitates PP-1c Catalysis.

Zhou Y, Millott R, Kim HJ, Peng S, Edwards RA, Skene-Arnold T, Hammel M, Lees-Miller SP, Tainer JA, Holmes CFB, Glover JNM.

Structure. 2019 Oct 1;27(10):1485-1496.e4. doi: 10.1016/j.str.2019.07.012. Epub 2019 Aug 8.

PMID:
31402222
3.

PHANOTATE: a novel approach to gene identification in phage genomes.

McNair K, Zhou C, Dinsdale EA, Souza B, Edwards RA.

Bioinformatics. 2019 Apr 25. pii: btz265. doi: 10.1093/bioinformatics/btz265. [Epub ahead of print]

PMID:
31329826
4.

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.

Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, Díaz Muñoz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Muñoz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cortés P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hyöty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ramírez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torres PJ, Twaddle A, Ugochi Ibekwe M, Villagra N, Wandro S, White B, Whiteley A, Whiteson KL, Wijmenga C, Zambrano MM, Zschach H, Dutilh BE.

Nat Microbiol. 2019 Oct;4(10):1727-1736. doi: 10.1038/s41564-019-0494-6. Epub 2019 Jul 8.

PMID:
31285584
5.

Assessing the Value of Time Series Real-World and Clinical Trial Data vs. Baseline-Only Data in Predicting Responses to Pregabalin Therapy for Patients with Painful Diabetic Peripheral Neuropathy.

Alexander J Jr, Edwards RA, Brodsky M, Savoldelli A, Manca L, Grugni R, Emir B, Whalen E, Watt S, Parsons B.

Clin Drug Investig. 2019 Aug;39(8):775-786. doi: 10.1007/s40261-019-00812-6.

PMID:
31243706
6.

Morphological variations of the infraorbital canal during CT has limited association with headshaking in horses.

Edwards RA, Hermans H, Veraa S.

Vet Radiol Ultrasound. 2019 Sep;60(5):485-492. doi: 10.1111/vru.12773. Epub 2019 Jun 4.

PMID:
31161704
7.

CRTAM Shapes the Gut Microbiota and Enhances the Severity of Infection.

Perez-Lopez A, Nuccio SP, Ushach I, Edwards RA, Pahu R, Silva S, Zlotnik A, Raffatellu M.

J Immunol. 2019 Jul 15;203(2):532-543. doi: 10.4049/jimmunol.1800890. Epub 2019 May 29.

PMID:
31142601
8.

Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages.

Barylski J, Enault F, Dutilh BE, Schuller MBP, Edwards RA, Gillis A, Klumpp J, Knezevic P, Krupovic M, Kuhn JH, Lavigne R, Oksanen HM, Sullivan MB, Jang HB, Simmonds P, Aiewsakun P, Wittmann J, Tolstoy I, Brister JR, Kropinski AM, Adriaenssens EM.

Syst Biol. 2019 May 25. pii: syz036. doi: 10.1093/sysbio/syz036. [Epub ahead of print]

PMID:
31127947
9.

Cyanobacterial biodiversity of semiarid public drinking water supply reservoirs assessed via next-generation DNA sequencing technology.

Lorenzi AS, Chia MA, Lopes FAC, Silva GGZ, Edwards RA, Bittencourt-Oliveira MDC.

J Microbiol. 2019 Jun;57(6):450-460. doi: 10.1007/s12275-019-8349-7. Epub 2019 May 27.

PMID:
31012060
10.

Diel population and functional synchrony of microbial communities on coral reefs.

Kelly LW, Nelson CE, Haas AF, Naliboff DS, Calhoun S, Carlson CA, Edwards RA, Fox MD, Hatay M, Johnson MD, Kelly ELA, Lim YW, Macherla S, Quinlan ZA, Silva GGZ, Vermeij MJA, Zgliczynski B, Sandin SA, Smith JE, Rohwer F.

Nat Commun. 2019 Apr 12;10(1):1691. doi: 10.1038/s41467-019-09419-z.

11.

Prodigious Prevotella phages.

Edwards RA.

Nat Microbiol. 2019 Apr;4(4):550-551. doi: 10.1038/s41564-019-0419-4. No abstract available.

PMID:
30899107
12.

'Genome skimming' with the MinION hand-held sequencer identifies CITES-listed shark species in India's exports market.

Johri S, Solanki J, Cantu VA, Fellows SR, Edwards RA, Moreno I, Vyas A, Dinsdale EA.

Sci Rep. 2019 Mar 14;9(1):4476. doi: 10.1038/s41598-019-40940-9.

13.

Correction: Using time series analysis approaches for improved prediction of pain outcomes in subgroups of patients with painful diabetic peripheral neuropathy.

Alexander J Jr, Edwards RA, Brodsky M, Manca L, Grugni R, Savoldelli A, Bonfanti G, Emir B, Whalen E, Watt S, Parsons B.

PLoS One. 2019 Feb 26;14(2):e0212959. doi: 10.1371/journal.pone.0212959. eCollection 2019.

14.

Reply to: Caution in inferring viral strategies from abundance correlations in marine metagenomes.

Coutinho FH, Silveira CB, Gregoracci GB, Thompson CC, Edwards RA, Brussaard CPD, Dutilh BE, Thompson FL.

Nat Commun. 2019 Jan 30;10(1):502. doi: 10.1038/s41467-018-08286-4. No abstract available.

15.

Using time series analysis approaches for improved prediction of pain outcomes in subgroups of patients with painful diabetic peripheral neuropathy.

Alexander J Jr, Edwards RA, Brodsky M, Manca L, Grugni R, Savoldelli A, Bonfanti G, Emir B, Whalen E, Watt S, Parsons B.

PLoS One. 2018 Dec 6;13(12):e0207120. doi: 10.1371/journal.pone.0207120. eCollection 2018. Erratum in: PLoS One. 2019 Feb 26;14(2):e0212959.

16.

Association Between Breastfeeding and Childhood Cardiovascular Disease Risk Factors.

Umer A, Hamilton C, Edwards RA, Cottrell L, Giacobbi P Jr, Innes K, John C, Kelley GA, Neal W, Lilly C.

Matern Child Health J. 2019 Feb;23(2):228-239. doi: 10.1007/s10995-018-2641-8.

PMID:
30499064
17.

Vanadium: A Re-Emerging Environmental Hazard.

Watt JAJ, Burke IT, Edwards RA, Malcolm HM, Mayes WM, Olszewska JP, Pan G, Graham MC, Heal KV, Rose NL, Turner SD, Spears BM.

Environ Sci Technol. 2018 Nov 6;52(21):11973-11974. doi: 10.1021/acs.est.8b05560. Epub 2018 Oct 25. No abstract available.

PMID:
30358993
18.

Predicting Responses to Pregabalin for Painful Diabetic Peripheral Neuropathy Based on Trajectory-Focused Patient Profiles Derived from the First 4 Weeks of Treatment.

Edwards RA, Bonfanti G, Grugni R, Manca L, Parsons B, Alexander J.

Adv Ther. 2018 Oct;35(10):1585-1597. doi: 10.1007/s12325-018-0780-3. Epub 2018 Sep 11.

19.

Fluorescent Protein Visualization Immediately After Gel Electrophoresis Using an In-Gel Trichloroethanol Photoreaction with Tryptophan.

Ladner-Keay CL, Turner RJ, Edwards RA.

Methods Mol Biol. 2018;1853:179-190. doi: 10.1007/978-1-4939-8745-0_22.

PMID:
30097944
20.

Antibody Engineering for Optimized Immunotherapy in Alzheimer's Disease.

Sumner IL, Edwards RA, Asuni AA, Teeling JL.

Front Neurosci. 2018 Apr 23;12:254. doi: 10.3389/fnins.2018.00254. eCollection 2018. Review.

21.

Growth Score: a single metric to define growth in 96-well phenotype assays.

Cuevas DA, Edwards RA.

PeerJ. 2018 Apr 19;6:e4681. doi: 10.7717/peerj.4681. eCollection 2018.

22.

Aging and Intermittent Fasting Impact on Transcriptional Regulation and Physiological Responses of Adult Drosophila Neuronal and Muscle Tissues.

Zhang S, Ratliff EP, Molina B, El-Mecharrafie N, Mastroianni J, Kotzebue RW, Achal M, Mauntz RE, Gonzalez A, Barekat A, Bray WA, Macias AM, Daugherty D, Harris GL, Edwards RA, Finley KD.

Int J Mol Sci. 2018 Apr 10;19(4). pii: E1140. doi: 10.3390/ijms19041140.

23.

Caudal lumbar spinal cysts in two French Bulldogs.

de Nies KS, Edwards RA, Bergknut N, Beukers M, Meij BP.

Acta Vet Scand. 2018 Mar 1;60(1):14. doi: 10.1186/s13028-018-0368-6.

24.

Dose Titration of Pregabalin in Patients with Painful Diabetic Peripheral Neuropathy: Simulation Based on Observational Study Patients Enriched with Data from Randomized Studies.

Alexander J Jr, Edwards RA, Manca L, Grugni R, Bonfanti G, Emir B, Whalen E, Watt S, Parsons B.

Adv Ther. 2018 Mar;35(3):382-394. doi: 10.1007/s12325-018-0664-6. Epub 2018 Feb 23.

PMID:
29476444
25.

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

Adriaenssens EM, Wittmann J, Kuhn JH, Turner D, Sullivan MB, Dutilh BE, Jang HB, van Zyl LJ, Klumpp J, Lobocka M, Moreno Switt AI, Rumnieks J, Edwards RA, Uchiyama J, Alfenas-Zerbini P, Petty NK, Kropinski AM, Barylski J, Gillis A, Clokie MRC, Prangishvili D, Lavigne R, Aziz RK, Duffy S, Krupovic M, Poranen MM, Knezevic P, Enault F, Tong Y, Oksanen HM, Rodney Brister J.

Arch Virol. 2018 Apr;163(4):1125-1129. doi: 10.1007/s00705-018-3723-z. Epub 2018 Jan 22. No abstract available.

PMID:
29356990
26.

Simulation-Based Skill Training for Trainees in Cardiac Surgery: A Systematic Review.

Ribeiro IB, Ngu JMC, Lam BK, Edwards RA.

Ann Thorac Surg. 2018 Mar;105(3):972-982. doi: 10.1016/j.athoracsur.2017.11.036. Epub 2017 Dec 14.

PMID:
29248416
27.

Kullback Leibler divergence in complete bacterial and phage genomes.

Akhter S, Aziz RK, Kashef MT, Ibrahim ES, Bailey B, Edwards RA.

PeerJ. 2017 Nov 30;5:e4026. doi: 10.7717/peerj.4026. eCollection 2017.

28.

Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.

Papudeshi B, Haggerty JM, Doane M, Morris MM, Walsh K, Beattie DT, Pande D, Zaeri P, Silva GGZ, Thompson F, Edwards RA, Dinsdale EA.

BMC Genomics. 2017 Nov 28;18(1):915. doi: 10.1186/s12864-017-4294-1.

29.

Addressing needs of diverse stakeholders: Twelve tips for leaders of health professions education programs.

Edwards RA, Venugopal S, Navedo D, Ramani S.

Med Teach. 2019 Jan;41(1):17-23. doi: 10.1080/0142159X.2017.1396307. Epub 2017 Nov 16.

PMID:
29141475
30.

Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut.

Yutin N, Makarova KS, Gussow AB, Krupovic M, Segall A, Edwards RA, Koonin EV.

Nat Microbiol. 2018 Jan;3(1):38-46. doi: 10.1038/s41564-017-0053-y. Epub 2017 Nov 13.

31.

Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.

Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC.

Nat Methods. 2017 Nov;14(11):1063-1071. doi: 10.1038/nmeth.4458. Epub 2017 Oct 2.

32.

Structural Insight into BLM Recognition by TopBP1.

Sun L, Huang Y, Edwards RA, Yang S, Blackford AN, Niedzwiedz W, Glover JNM.

Structure. 2017 Oct 3;25(10):1582-1588.e3. doi: 10.1016/j.str.2017.08.005. Epub 2017 Sep 14.

33.

Vacancies, disorder-induced smearing of the electronic structure, and its implications for the superconductivity of anti-perovskite MgC0.93Ni2.85.

Ernsting D, Billington D, Millichamp TE, Edwards RA, Sparkes HA, Zhigadlo ND, Giblin SR, Taylor JW, Duffy JA, Dugdale SB.

Sci Rep. 2017 Aug 31;7(1):10148. doi: 10.1038/s41598-017-09997-2.

34.

Randomized Controlled Study of a Remote Flipped Classroom Neuro-otology Curriculum.

Carrick FR, Abdulrahman M, Hankir A, Zayaruzny M, Najem K, Lungchukiet P, Edwards RA.

Front Neurol. 2017 Jul 24;8:349. doi: 10.3389/fneur.2017.00349. eCollection 2017.

35.

Corrigendum: Allelic variation contributes to bacterial host specificity.

Yue M, Han X, De Masi L, Zhu C, Ma X, Zhang J, Wu R, Schmieder R, Kaushik RS, Fraser GP, Zhao S, McDermott PF, Weill FX, Mainil JG, Arze C, Fricke WF, Edwards RA, Brisson D, Zhang NR, Rankin SC, Schifferli DM.

Nat Commun. 2017 Aug 8;8:15229. doi: 10.1038/ncomms15229.

36.

Integrating data from randomized controlled trials and observational studies to predict the response to pregabalin in patients with painful diabetic peripheral neuropathy.

Alexander J, Edwards RA, Savoldelli A, Manca L, Grugni R, Emir B, Whalen E, Watt S, Brodsky M, Parsons B.

BMC Med Res Methodol. 2017 Jul 20;17(1):113. doi: 10.1186/s12874-017-0389-2.

37.

Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans.

Coutinho FH, Silveira CB, Gregoracci GB, Thompson CC, Edwards RA, Brussaard CPD, Dutilh BE, Thompson FL.

Nat Commun. 2017 Jul 5;8:15955. doi: 10.1038/ncomms15955.

38.

Comparison of an alcohol-based hand sanitation product with a traditional chlorhexidine hand scrub technique for hand hygiene preparation in an equine hospital.

Edwards RA, Riley CB, Howe L, Burrows EA, Riley KT, Frellstedt L.

N Z Vet J. 2017 Sep;65(5):242-247. doi: 10.1080/00480169.2017.1342175. Epub 2017 Jul 2.

PMID:
28614973
39.

Bacterial Community Associated with the Reef Coral Mussismilia braziliensis's Momentum Boundary Layer over a Diel Cycle.

Silveira CB, Gregoracci GB, Coutinho FH, Silva GGZ, Haggerty JM, de Oliveira LS, Cabral AS, Rezende CE, Thompson CC, Francini-Filho RB, Edwards RA, Dinsdale EA, Thompson FL.

Front Microbiol. 2017 May 22;8:784. doi: 10.3389/fmicb.2017.00784. eCollection 2017.

40.

Structural and functional characterization of the PNKP-XRCC4-LigIV DNA repair complex.

Aceytuno RD, Piett CG, Havali-Shahriari Z, Edwards RA, Rey M, Ye R, Javed F, Fang S, Mani R, Weinfeld M, Hammel M, Tainer JA, Schriemer DC, Lees-Miller SP, Glover JNM.

Nucleic Acids Res. 2017 Jun 2;45(10):6238-6251. doi: 10.1093/nar/gkx275.

41.

An Agile Functional Analysis of Metagenomic Data Using SUPER-FOCUS.

Silva GGZ, Lopes FAC, Edwards RA.

Methods Mol Biol. 2017;1611:35-44. doi: 10.1007/978-1-4939-7015-5_4.

PMID:
28451970
42.

PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive.

Torres PJ, Edwards RA, McNair KA.

Bioinformatics. 2017 Aug 1;33(15):2389-2391. doi: 10.1093/bioinformatics/btx184.

43.

PMAnalyzer: a new web interface for bacterial growth curve analysis.

Cuevas DA, Edwards RA.

Bioinformatics. 2017 Jun 15;33(12):1905-1906. doi: 10.1093/bioinformatics/btx084.

44.

Mathematical modeling links Wnt signaling to emergent patterns of metabolism in colon cancer.

Lee M, Chen GT, Puttock E, Wang K, Edwards RA, Waterman ML, Lowengrub J.

Mol Syst Biol. 2017 Feb 9;13(2):912. doi: 10.15252/msb.20167386.

45.

Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee.

Adriaenssens EM, Krupovic M, Knezevic P, Ackermann HW, Barylski J, Brister JR, Clokie MR, Duffy S, Dutilh BE, Edwards RA, Enault F, Jang HB, Klumpp J, Kropinski AM, Lavigne R, Poranen MM, Prangishvili D, Rumnieks J, Sullivan MB, Wittmann J, Oksanen HM, Gillis A, Kuhn JH.

Arch Virol. 2017 Apr;162(4):1153-1157. doi: 10.1007/s00705-016-3173-4. Epub 2016 Dec 31. No abstract available.

PMID:
28040838
46.

Siderophore-based immunization strategy to inhibit growth of enteric pathogens.

Sassone-Corsi M, Chairatana P, Zheng T, Perez-Lopez A, Edwards RA, George MD, Nolan EM, Raffatellu M.

Proc Natl Acad Sci U S A. 2016 Nov 22;113(47):13462-13467. Epub 2016 Nov 7.

47.

Corrigendum: Lytic to temperate switching of viral communities.

Knowles B, Silveira CB, Bailey BA, Barott K, Cantu VA, Cobián-Güemes AG, Coutinho FH, Dinsdale EA, Felts B, Furby KA, George EE, Green KT, Gregoracci GB, Haas AF, Haggerty JM, Hester ER, Hisakawa N, Kelly LW, Lim YW, Little M, Luque A, McDole-Somera T, McNair K, de Oliveira LS, Quistad SD, Robinett NL, Sala E, Salamon P, Sanchez SE, Sandin S, Silva GG, Smith J, Sullivan C, Thompson C, Vermeij MJ, Youle M, Young C, Zgliczynski B, Brainard R, Edwards RA, Nulton J, Thompson F, Rohwer F.

Nature. 2016 Nov 3;539(7627):123. doi: 10.1038/nature19335. Epub 2016 Aug 24. No abstract available.

PMID:
27556939
48.

Targeting cancer metabolism by simultaneously disrupting parallel nutrient access pathways.

Kim SM, Roy SG, Chen B, Nguyen TM, McMonigle RJ, McCracken AN, Zhang Y, Kofuji S, Hou J, Selwan E, Finicle BT, Nguyen TT, Ravi A, Ramirez MU, Wiher T, Guenther GG, Kono M, Sasaki AT, Weisman LS, Potma EO, Tromberg BJ, Edwards RA, Hanessian S, Edinger AL.

J Clin Invest. 2016 Nov 1;126(11):4088-4102. doi: 10.1172/JCI87148. Epub 2016 Sep 26.

49.

Microcins mediate competition among Enterobacteriaceae in the inflamed gut.

Sassone-Corsi M, Nuccio SP, Liu H, Hernandez D, Vu CT, Takahashi AA, Edwards RA, Raffatellu M.

Nature. 2016 Dec 8;540(7632):280-283. doi: 10.1038/nature20557. Epub 2016 Oct 31.

50.

Lactate/pyruvate transporter MCT-1 is a direct Wnt target that confers sensitivity to 3-bromopyruvate in colon cancer.

Sprowl-Tanio S, Habowski AN, Pate KT, McQuade MM, Wang K, Edwards RA, Grun F, Lyou Y, Waterman ML.

Cancer Metab. 2016 Oct 3;4:20. eCollection 2016.

Supplemental Content

Loading ...
Support Center