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Items: 1 to 50 of 52

1.

Fungi in the Marine Environment: Open Questions and Unsolved Problems.

Amend A, Burgaud G, Cunliffe M, Edgcomb VP, Ettinger CL, Gutiérrez MH, Heitman J, Hom EFY, Ianiri G, Jones AC, Kagami M, Picard KT, Quandt CA, Raghukumar S, Riquelme M, Stajich J, Vargas-Muñiz J, Walker AK, Yarden O, Gladfelter AS.

MBio. 2019 Mar 5;10(2). pii: e01189-18. doi: 10.1128/mBio.01189-18. Review.

2.

The genome of an endosymbiotic methanogen is very similar to those of its free-living relatives.

Beinart RA, Rotterová J, Čepička I, Gast RJ, Edgcomb VP.

Environ Microbiol. 2018 Jul;20(7):2538-2551. doi: 10.1111/1462-2920.14279. Epub 2018 Aug 23.

PMID:
29797769
3.

Insights into the metabolic functioning of a multipartner ciliate symbiosis from oxygen-depleted sediments.

Beinart RA, Beaudoin DJ, Bernhard JM, Edgcomb VP.

Mol Ecol. 2018 Apr;27(8):1794-1807. doi: 10.1111/mec.14465. Epub 2018 Jan 22.

PMID:
29271011
4.

Free-living chemoautotrophic and particle-attached heterotrophic prokaryotes dominate microbial assemblages along a pelagic redox gradient.

Suter EA, Pachiadaki M, Taylor GT, Astor Y, Edgcomb VP.

Environ Microbiol. 2018 Feb;20(2):693-712. doi: 10.1111/1462-2920.13997. Epub 2017 Dec 7.

PMID:
29160034
5.

Toward establishing model organisms for marine protists: Successful transfection protocols for Parabodo caudatus (Kinetoplastida: Excavata).

Gomaa F, Garcia PA, Delaney J, Girguis PR, Buie CR, Edgcomb VP.

Environ Microbiol. 2017 Sep;19(9):3487-3499. doi: 10.1111/1462-2920.13830. Epub 2017 Jul 21.

PMID:
28631386
6.

Gene expression profiling of microbial activities and interactions in sediments under haloclines of E. Mediterranean deep hypersaline anoxic basins.

Edgcomb VP, Pachiadaki MG, Mara P, Kormas KA, Leadbetter ER, Bernhard JM.

ISME J. 2016 Nov;10(11):2643-2657. doi: 10.1038/ismej.2016.58. Epub 2016 Apr 19.

7.

The Diversity of Sulfide Oxidation and Sulfate Reduction Genes Expressed by the Bacterial Communities of the Cariaco Basin, Venezuela.

Rodriguez-Mora MJ, Edgcomb VP, Taylor C, Scranton MI, Taylor GT, Chistoserdov AY.

Open Microbiol J. 2016 Aug 31;10:140-9. doi: 10.2174/1874285801610010140. eCollection 2016.

8.

Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy.

Pachiadaki MG, Rédou V, Beaudoin DJ, Burgaud G, Edgcomb VP.

Front Microbiol. 2016 Jun 9;7:846. doi: 10.3389/fmicb.2016.00846. eCollection 2016.

9.

Revisiting the pink-red pigmented basidiomycete mirror yeast of the phyllosphere.

Cobban A, Edgcomb VP, Burgaud G, Repeta D, Leadbetter ER.

Microbiologyopen. 2016 Oct;5(5):846-855. doi: 10.1002/mbo3.374. Epub 2016 May 10.

10.

Marine protist associations and environmental impacts across trophic levels in the twilight zone and below.

Edgcomb VP.

Curr Opin Microbiol. 2016 Jun;31:169-175. doi: 10.1016/j.mib.2016.04.001. Epub 2016 Apr 17. Review.

PMID:
27092409
11.

Metazoans of redoxcline sediments in Mediterranean deep-sea hypersaline anoxic basins.

Bernhard JM, Morrison CR, Pape E, Beaudoin DJ, Todaro MA, Pachiadaki MG, Kormas KA, Edgcomb VP.

BMC Biol. 2015 Dec 10;13:105. doi: 10.1186/s12915-015-0213-6.

12.

Combined Culture-Based and Culture-Independent Approaches Provide Insights into Diversity of Jakobids, an Extremely Plesiomorphic Eukaryotic Lineage.

Pánek T, Táborský P, Pachiadaki MG, Hroudová M, Vlček Č, Edgcomb VP, Čepička I.

Front Microbiol. 2015 Nov 18;6:1288. doi: 10.3389/fmicb.2015.01288. eCollection 2015.

13.

Inter-comparison of the potentially active prokaryotic communities in the halocline sediments of Mediterranean deep-sea hypersaline basins.

Kormas KA, Pachiadaki MG, Karayanni H, Leadbetter ER, Bernhard JM, Edgcomb VP.

Extremophiles. 2015 Sep;19(5):949-60. doi: 10.1007/s00792-015-0770-1. Epub 2015 Jul 16.

PMID:
26174531
14.

Protist Community Grazing on Prokaryotic Prey in Deep Ocean Water Masses.

Rocke E, Pachiadaki MG, Cobban A, Kujawinski EB, Edgcomb VP.

PLoS One. 2015 Apr 20;10(4):e0124505. doi: 10.1371/journal.pone.0124505. eCollection 2015.

15.

Size-fractionated diversity of eukaryotic microbial communities in the Eastern Tropical North Pacific oxygen minimum zone.

Duret MT, Pachiadaki MG, Stewart FJ, Sarode N, Christaki U, Monchy S, Srivastava A, Edgcomb VP.

FEMS Microbiol Ecol. 2015 May;91(5). pii: fiv037. doi: 10.1093/femsec/fiv037. Epub 2015 Apr 1.

PMID:
25873468
16.

Depth shapes α- and β-diversities of microbial eukaryotes in surficial sediments of coastal ecosystems.

Gong J, Shi F, Ma B, Dong J, Pachiadaki M, Zhang X, Edgcomb VP.

Environ Microbiol. 2015 Oct;17(10):3722-37. doi: 10.1111/1462-2920.12763. Epub 2015 Feb 11.

PMID:
25581721
17.

Benthic protists and fungi of Mediterranean deep hypsersaline anoxic basin redoxcline sediments.

Bernhard JM, Kormas K, Pachiadaki MG, Rocke E, Beaudoin DJ, Morrison C, Visscher PT, Cobban A, Starczak VR, Edgcomb VP.

Front Microbiol. 2014 Nov 12;5:605. doi: 10.3389/fmicb.2014.00605. eCollection 2014.

18.

Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile.

Parris DJ, Ganesh S, Edgcomb VP, DeLong EF, Stewart FJ.

Front Microbiol. 2014 Oct 28;5:543. doi: 10.3389/fmicb.2014.00543. eCollection 2014.

19.

Ciliates along oxyclines of permanently stratified marine water columns.

Edgcomb VP, Pachiadaki M.

J Eukaryot Microbiol. 2014 Jul-Aug;61(4):434-45. doi: 10.1111/jeu.12122. Epub 2014 Jun 3.

PMID:
24801774
20.

A resurgence in field research is essential to better understand the diversity, ecology, and evolution of microbial eukaryotes.

Heger TJ, Edgcomb VP, Kim E, Lukeš J, Leander BS, Yubuki N.

J Eukaryot Microbiol. 2014 Mar-Apr;61(2):214-23. doi: 10.1111/jeu.12095. Epub 2014 Feb 25.

PMID:
24325268
21.

Active eukaryotes in microbialites from Highborne Cay, Bahamas, and Hamelin Pool (Shark Bay), Australia.

Edgcomb VP, Bernhard JM, Summons RE, Orsi W, Beaudoin D, Visscher PT.

ISME J. 2014 Feb;8(2):418-29. doi: 10.1038/ismej.2013.130. Epub 2013 Aug 8.

22.

Gene expression in the deep biosphere.

Orsi WD, Edgcomb VP, Christman GD, Biddle JF.

Nature. 2013 Jul 11;499(7457):205-8. doi: 10.1038/nature12230. Epub 2013 Jun 12.

PMID:
23760485
23.

Deep subsurface microbiology: a guide to the research topic papers.

Teske A, Biddle JF, Edgcomb VP, Schippers A.

Front Microbiol. 2013 May 16;4:122. doi: 10.3389/fmicb.2013.00122. eCollection 2013. No abstract available.

24.

Insights into foraminiferal influences on microfabrics of microbialites at Highborne Cay, Bahamas.

Bernhard JM, Edgcomb VP, Visscher PT, McIntyre-Wressnig A, Summons RE, Bouxsein ML, Louis L, Jeglinski M.

Proc Natl Acad Sci U S A. 2013 Jun 11;110(24):9830-4. doi: 10.1073/pnas.1221721110. Epub 2013 May 28.

25.

Molecular indicators of microbial diversity in oolitic sands of Highborne Cay, Bahamas.

Edgcomb VP, Bernhard JM, Beaudoin D, Pruss S, Welander PV, Schubotz F, Mehay S, Gillespie AL, Summons RE.

Geobiology. 2013 May;11(3):234-51. doi: 10.1111/gbi.12029. Epub 2013 Feb 11.

PMID:
23398981
26.

Heterotrophic protists in hypersaline microbial mats and deep hypersaline basin water columns.

Edgcomb VP, Bernhard JM.

Life (Basel). 2013 May 22;3(2):346-62. doi: 10.3390/life3020346.

27.

Prevalence of partnerships between bacteria and ciliates in oxygen-depleted marine water columns.

Orsi W, Charvet S, Vd'ačný P, Bernhard JM, Edgcomb VP.

Front Microbiol. 2012 Sep 19;3:341. doi: 10.3389/fmicb.2012.00341. eCollection 2012.

28.

Denitrification likely catalyzed by endobionts in an allogromiid foraminifer.

Bernhard JM, Edgcomb VP, Casciotti KL, McIlvin MR, Beaudoin DJ.

ISME J. 2012 May;6(5):951-60. doi: 10.1038/ismej.2011.171. Epub 2011 Dec 1.

29.

Structured multiple endosymbiosis of bacteria and archaea in a ciliate from marine sulfidic sediments: a survival mechanism in low oxygen, sulfidic sediments?

Edgcomb VP, Leadbetter ER, Bourland W, Beaudoin D, Bernhard JM.

Front Microbiol. 2011 Mar 25;2:55. doi: 10.3389/fmicb.2011.00055. eCollection 2011.

30.

Presence of the oral bacterium Capnocytophaga canimorsus in the tooth plaque of canines.

Dilegge SK, Edgcomb VP, Leadbetter ER.

Vet Microbiol. 2011 May 5;149(3-4):437-45. doi: 10.1016/j.vetmic.2010.12.010. Epub 2010 Dec 14.

PMID:
21239122
31.

Marine subsurface eukaryotes: the fungal majority.

Edgcomb VP, Beaudoin D, Gast R, Biddle JF, Teske A.

Environ Microbiol. 2011 Jan;13(1):172-183. doi: 10.1111/j.1462-2920.2010.02318.x.

PMID:
21199255
32.

Identity of epibiotic bacteria on symbiontid euglenozoans in O2-depleted marine sediments: evidence for symbiont and host co-evolution.

Edgcomb VP, Breglia SA, Yubuki N, Beaudoin D, Patterson DJ, Leander BS, Bernhard JM.

ISME J. 2011 Feb;5(2):231-43. doi: 10.1038/ismej.2010.121. Epub 2010 Aug 5.

33.

Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities.

Stoeck T, Behnke A, Christen R, Amaral-Zettler L, Rodriguez-Mora MJ, Chistoserdov A, Orsi W, Edgcomb VP.

BMC Biol. 2009 Nov 3;7:72. doi: 10.1186/1741-7007-7-72.

34.

Ultrastructure and molecular phylogeny of Calkinsia aureus: cellular identity of a novel clade of deep-sea euglenozoans with epibiotic bacteria.

Yubuki N, Edgcomb VP, Bernhard JM, Leander BS.

BMC Microbiol. 2009 Jan 27;9:16. doi: 10.1186/1471-2180-9-16.

35.

The diversity and abundance of bacteria inhabiting seafloor lavas positively correlate with rock alteration.

Santelli CM, Edgcomb VP, Bach W, Edwards KJ.

Environ Microbiol. 2009 Jan;11(1):86-98. doi: 10.1111/j.1462-2920.2008.01743.x. Epub 2008 Sep 8.

PMID:
18783382
36.
37.

The presence of four iron-containing superoxide dismutase isozymes in trypanosomatidae: characterization, subcellular localization, and phylogenetic origin in Trypanosoma brucei.

Dufernez F, Yernaux C, Gerbod D, Noël C, Chauvenet M, Wintjens R, Edgcomb VP, Capron M, Opperdoes FR, Viscogliosi E.

Free Radic Biol Med. 2006 Jan 15;40(2):210-25. Epub 2005 Aug 11.

PMID:
16413404
38.

Effects of dissolved sulfide, pH, and temperature on growth and survival of marine hyperthermophilic Archaea.

Lloyd KG, Edgcomb VP, Molyneaux SJ, Böer S, Wirsen CO, Atkins MS, Teske A.

Appl Environ Microbiol. 2005 Oct;71(10):6383-7.

39.

Molecular phylogenies of Blastocystis isolates from different hosts: implications for genetic diversity, identification of species, and zoonosis.

Noël C, Dufernez F, Gerbod D, Edgcomb VP, Delgado-Viscogliosi P, Ho LC, Singh M, Wintjens R, Sogin ML, Capron M, Pierce R, Zenner L, Viscogliosi E.

J Clin Microbiol. 2005 Jan;43(1):348-55.

40.

Sulfide ameliorates metal toxicity for deep-sea hydrothermal vent archaea.

Edgcomb VP, Molyneaux SJ, Saito MA, Lloyd K, Böer S, Wirsen CO, Atkins MS, Teske A.

Appl Environ Microbiol. 2004 Apr;70(4):2551-5.

41.

Phylogenetic analysis of Blastocystis isolates from different hosts based on the comparison of small-subunit rRNA gene sequences.

Noël C, Peyronnet C, Gerbod D, Edgcomb VP, Delgado-Viscogliosi P, Sogin ML, Capron M, Viscogliosi E, Zenner L.

Mol Biochem Parasitol. 2003 Jan;126(1):119-23. No abstract available.

PMID:
12554093
42.

Molecular phylogeny of parabasalids inferred from small subunit rRNA sequences, with emphasis on the Devescovinidae and Calonymphidae (Trichomonadea).

Gerbod D, Noël C, Dolan MF, Edgcomb VP, Kitade O, Noda S, Dufernez F, Ohkuma M, Kudo T, Capron M, Sogin ML, Viscogliosi E.

Mol Phylogenet Evol. 2002 Dec;25(3):545-56.

PMID:
12450758
43.

Evolutionary history of "early-diverging" eukaryotes: the excavate taxon Carpediemonas is a close relative of Giardia.

Simpson AG, Roger AJ, Silberman JD, Leipe DD, Edgcomb VP, Jermiin LS, Patterson DJ, Sogin ML.

Mol Biol Evol. 2002 Oct;19(10):1782-91.

PMID:
12270904
44.

Benthic eukaryotic diversity in the Guaymas Basin hydrothermal vent environment.

Edgcomb VP, Kysela DT, Teske A, de Vera Gomez A, Sogin ML.

Proc Natl Acad Sci U S A. 2002 May 28;99(11):7658-62.

45.

Pelobionts are degenerate protists: insights from molecules and morphology.

Edgcomb VP, Simpson AG, Zettler LA, Nerad TA, Patterson DJ, Holder ME, Sogin ML.

Mol Biol Evol. 2002 Jun;19(6):978-82. No abstract available.

PMID:
12032256
46.

Phylogenetic relationships of class II fumarase genes from trichomonad species.

Gerbod D, Edgcomb VP, Noël C, Vanácová S, Wintjens R, Tachezy J, Sogin ML, Viscogliosi E.

Mol Biol Evol. 2001 Aug;18(8):1574-84.

PMID:
11470849
47.

Phylogenetic position of the trichomonad parasite of turkeys, Histomonas meleagridis (Smith) Tyzzer, inferred from small subunit rRNA sequence.

Gerbod D, Edgcomb VP, Noël C, Zenner L, Wintjens R, Delgado-Viscogliosi P, Holder ME, Sogin ML, Viscogliosi E.

J Eukaryot Microbiol. 2001 Jul-Aug;48(4):498-504.

PMID:
11456328
48.

Evolutionary relationships among "jakobid" flagellates as indicated by alpha- and beta-tubulin phylogenies.

Edgcomb VP, Roger AJ, Simpson AG, Kysela DT, Sogin ML.

Mol Biol Evol. 2001 Apr;18(4):514-22.

PMID:
11264402
49.

Phylogenetic position of parabasalid symbionts from the termite Calotermes flavicollis based on small subunit rRNA sequences.

Gerbod D, Edgcomb VP, Noël C, Delgado-Viscogliosi P, Viscogliosi E.

Int Microbiol. 2000 Sep;3(3):165-72.

PMID:
11032309
50.

Molecular phylogeny of parabasalids based on small subunit rRNA sequences, with emphasis on the Trichomonadinae subfamily.

Delgado-Viscogliosi P, Viscogliosi E, Gerbod D, Kulda J, Sogin ML, Edgcomb VP.

J Eukaryot Microbiol. 2000 Jan-Feb;47(1):70-5.

PMID:
10651299

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