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Recycling and metabolic flexibility dictate life in the lower oceanic crust.

Li J, Mara P, Schubotz F, Sylvan JB, Burgaud G, Klein F, Beaudoin D, Wee SY, Dick HJB, Lott S, Cox R, Meyer LAE, Quémener M, Blackman DK, Edgcomb VP.

Nature. 2020 Mar;579(7798):250-255. doi: 10.1038/s41586-020-2075-5. Epub 2020 Mar 11.


Symbiotic magnetic motility.

Edgcomb V.

Nat Microbiol. 2019 Jul;4(7):1066-1067. doi: 10.1038/s41564-019-0489-3. No abstract available.


Fungi in the Marine Environment: Open Questions and Unsolved Problems.

Amend A, Burgaud G, Cunliffe M, Edgcomb VP, Ettinger CL, Gutiérrez MH, Heitman J, Hom EFY, Ianiri G, Jones AC, Kagami M, Picard KT, Quandt CA, Raghukumar S, Riquelme M, Stajich J, Vargas-Muñiz J, Walker AK, Yarden O, Gladfelter AS.

mBio. 2019 Mar 5;10(2). pii: e01189-18. doi: 10.1128/mBio.01189-18. Review.


Strength in numbers: Collaborative science for new experimental model systems.

Waller RF, Cleves PA, Rubio-Brotons M, Woods A, Bender SJ, Edgcomb V, Gann ER, Jones AC, Teytelman L, von Dassow P, Wilhelm SW, Collier JL.

PLoS Biol. 2018 Jul 2;16(7):e2006333. doi: 10.1371/journal.pbio.2006333. eCollection 2018 Jul.


The genome of an endosymbiotic methanogen is very similar to those of its free-living relatives.

Beinart RA, Rotterová J, Čepička I, Gast RJ, Edgcomb VP.

Environ Microbiol. 2018 Jul;20(7):2538-2551. doi: 10.1111/1462-2920.14279. Epub 2018 Aug 23.


Insights into the metabolic functioning of a multipartner ciliate symbiosis from oxygen-depleted sediments.

Beinart RA, Beaudoin DJ, Bernhard JM, Edgcomb VP.

Mol Ecol. 2018 Apr;27(8):1794-1807. doi: 10.1111/mec.14465. Epub 2018 Jan 22.


Free-living chemoautotrophic and particle-attached heterotrophic prokaryotes dominate microbial assemblages along a pelagic redox gradient.

Suter EA, Pachiadaki M, Taylor GT, Astor Y, Edgcomb VP.

Environ Microbiol. 2018 Feb;20(2):693-712. doi: 10.1111/1462-2920.13997. Epub 2017 Dec 7.


Toward establishing model organisms for marine protists: Successful transfection protocols for Parabodo caudatus (Kinetoplastida: Excavata).

Gomaa F, Garcia PA, Delaney J, Girguis PR, Buie CR, Edgcomb VP.

Environ Microbiol. 2017 Sep;19(9):3487-3499. doi: 10.1111/1462-2920.13830. Epub 2017 Jul 21.


UniEuk: Time to Speak a Common Language in Protistology!

Berney C, Ciuprina A, Bender S, Brodie J, Edgcomb V, Kim E, Rajan J, Parfrey LW, Adl S, Audic S, Bass D, Caron DA, Cochrane G, Czech L, Dunthorn M, Geisen S, Glöckner FO, Mahé F, Quast C, Kaye JZ, Simpson AGB, Stamatakis A, Del Campo J, Yilmaz P, de Vargas C.

J Eukaryot Microbiol. 2017 May;64(3):407-411. doi: 10.1111/jeu.12414. Epub 2017 Apr 21. Review.


Gene expression profiling of microbial activities and interactions in sediments under haloclines of E. Mediterranean deep hypersaline anoxic basins.

Edgcomb VP, Pachiadaki MG, Mara P, Kormas KA, Leadbetter ER, Bernhard JM.

ISME J. 2016 Nov;10(11):2643-2657. doi: 10.1038/ismej.2016.58. Epub 2016 Apr 19.


The Diversity of Sulfide Oxidation and Sulfate Reduction Genes Expressed by the Bacterial Communities of the Cariaco Basin, Venezuela.

Rodriguez-Mora MJ, Edgcomb VP, Taylor C, Scranton MI, Taylor GT, Chistoserdov AY.

Open Microbiol J. 2016 Aug 31;10:140-9. doi: 10.2174/1874285801610010140. eCollection 2016.


Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy.

Pachiadaki MG, Rédou V, Beaudoin DJ, Burgaud G, Edgcomb VP.

Front Microbiol. 2016 Jun 9;7:846. doi: 10.3389/fmicb.2016.00846. eCollection 2016.


Revisiting the pink-red pigmented basidiomycete mirror yeast of the phyllosphere.

Cobban A, Edgcomb VP, Burgaud G, Repeta D, Leadbetter ER.

Microbiologyopen. 2016 Oct;5(5):846-855. doi: 10.1002/mbo3.374. Epub 2016 May 10.


Marine protist associations and environmental impacts across trophic levels in the twilight zone and below.

Edgcomb VP.

Curr Opin Microbiol. 2016 Jun;31:169-175. doi: 10.1016/j.mib.2016.04.001. Epub 2016 Apr 17. Review.


Metazoans of redoxcline sediments in Mediterranean deep-sea hypersaline anoxic basins.

Bernhard JM, Morrison CR, Pape E, Beaudoin DJ, Todaro MA, Pachiadaki MG, Kormas KA, Edgcomb VP.

BMC Biol. 2015 Dec 10;13:105. doi: 10.1186/s12915-015-0213-6.


Combined Culture-Based and Culture-Independent Approaches Provide Insights into Diversity of Jakobids, an Extremely Plesiomorphic Eukaryotic Lineage.

Pánek T, Táborský P, Pachiadaki MG, Hroudová M, Vlček Č, Edgcomb VP, Čepička I.

Front Microbiol. 2015 Nov 18;6:1288. doi: 10.3389/fmicb.2015.01288. eCollection 2015.


Inter-comparison of the potentially active prokaryotic communities in the halocline sediments of Mediterranean deep-sea hypersaline basins.

Kormas KA, Pachiadaki MG, Karayanni H, Leadbetter ER, Bernhard JM, Edgcomb VP.

Extremophiles. 2015 Sep;19(5):949-60. doi: 10.1007/s00792-015-0770-1. Epub 2015 Jul 16.


Protist Community Grazing on Prokaryotic Prey in Deep Ocean Water Masses.

Rocke E, Pachiadaki MG, Cobban A, Kujawinski EB, Edgcomb VP.

PLoS One. 2015 Apr 20;10(4):e0124505. doi: 10.1371/journal.pone.0124505. eCollection 2015.


Size-fractionated diversity of eukaryotic microbial communities in the Eastern Tropical North Pacific oxygen minimum zone.

Duret MT, Pachiadaki MG, Stewart FJ, Sarode N, Christaki U, Monchy S, Srivastava A, Edgcomb VP.

FEMS Microbiol Ecol. 2015 May;91(5). pii: fiv037. doi: 10.1093/femsec/fiv037. Epub 2015 Apr 1.


Depth shapes α- and β-diversities of microbial eukaryotes in surficial sediments of coastal ecosystems.

Gong J, Shi F, Ma B, Dong J, Pachiadaki M, Zhang X, Edgcomb VP.

Environ Microbiol. 2015 Oct;17(10):3722-37. doi: 10.1111/1462-2920.12763. Epub 2015 Feb 11.


Benthic protists and fungi of Mediterranean deep hypsersaline anoxic basin redoxcline sediments.

Bernhard JM, Kormas K, Pachiadaki MG, Rocke E, Beaudoin DJ, Morrison C, Visscher PT, Cobban A, Starczak VR, Edgcomb VP.

Front Microbiol. 2014 Nov 12;5:605. doi: 10.3389/fmicb.2014.00605. eCollection 2014.


Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile.

Parris DJ, Ganesh S, Edgcomb VP, DeLong EF, Stewart FJ.

Front Microbiol. 2014 Oct 28;5:543. doi: 10.3389/fmicb.2014.00543. eCollection 2014.


In-depth analyses of deep subsurface sediments using 454-pyrosequencing reveals a reservoir of buried fungal communities at record-breaking depths.

Rédou V, Ciobanu MC, Pachiadaki MG, Edgcomb V, Alain K, Barbier G, Burgaud G.

FEMS Microbiol Ecol. 2014 Dec;90(3):908-21. doi: 10.1111/1574-6941.12447. Epub 2014 Nov 17.


Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin.

Pachiadaki MG, Yakimov MM, LaCono V, Leadbetter E, Edgcomb V.

ISME J. 2014 Dec;8(12):2478-89. doi: 10.1038/ismej.2014.100. Epub 2014 Jun 20.


Ciliates along oxyclines of permanently stratified marine water columns.

Edgcomb VP, Pachiadaki M.

J Eukaryot Microbiol. 2014 Jul-Aug;61(4):434-45. doi: 10.1111/jeu.12122. Epub 2014 Jun 3.


A resurgence in field research is essential to better understand the diversity, ecology, and evolution of microbial eukaryotes.

Heger TJ, Edgcomb VP, Kim E, Lukeš J, Leander BS, Yubuki N.

J Eukaryot Microbiol. 2014 Mar-Apr;61(2):214-23. doi: 10.1111/jeu.12095. Epub 2014 Feb 25.


Active eukaryotes in microbialites from Highborne Cay, Bahamas, and Hamelin Pool (Shark Bay), Australia.

Edgcomb VP, Bernhard JM, Summons RE, Orsi W, Beaudoin D, Visscher PT.

ISME J. 2014 Feb;8(2):418-29. doi: 10.1038/ismej.2013.130. Epub 2013 Aug 8.


Evidence for isolated evolution of deep-sea ciliate communities through geological separation and environmental selection.

Stock A, Edgcomb V, Orsi W, Filker S, Breiner HW, Yakimov MM, Stoeck T.

BMC Microbiol. 2013 Jul 8;13:150. doi: 10.1186/1471-2180-13-150.


Gene expression in the deep biosphere.

Orsi WD, Edgcomb VP, Christman GD, Biddle JF.

Nature. 2013 Jul 11;499(7457):205-8. doi: 10.1038/nature12230. Epub 2013 Jun 12.


Deep subsurface microbiology: a guide to the research topic papers.

Teske A, Biddle JF, Edgcomb VP, Schippers A.

Front Microbiol. 2013 May 16;4:122. doi: 10.3389/fmicb.2013.00122. eCollection 2013. No abstract available.


Insights into foraminiferal influences on microfabrics of microbialites at Highborne Cay, Bahamas.

Bernhard JM, Edgcomb VP, Visscher PT, McIntyre-Wressnig A, Summons RE, Bouxsein ML, Louis L, Jeglinski M.

Proc Natl Acad Sci U S A. 2013 Jun 11;110(24):9830-4. doi: 10.1073/pnas.1221721110. Epub 2013 May 28.


Deep sequencing of subseafloor eukaryotic rRNA reveals active Fungi across marine subsurface provinces.

Orsi W, Biddle JF, Edgcomb V.

PLoS One. 2013;8(2):e56335. doi: 10.1371/journal.pone.0056335. Epub 2013 Feb 13.


Molecular indicators of microbial diversity in oolitic sands of Highborne Cay, Bahamas.

Edgcomb VP, Bernhard JM, Beaudoin D, Pruss S, Welander PV, Schubotz F, Mehay S, Gillespie AL, Summons RE.

Geobiology. 2013 May;11(3):234-51. doi: 10.1111/gbi.12029. Epub 2013 Feb 11.


Heterotrophic protists in hypersaline microbial mats and deep hypersaline basin water columns.

Edgcomb VP, Bernhard JM.

Life (Basel). 2013 May 22;3(2):346-62. doi: 10.3390/life3020346.


Environmental selection of protistan plankton communities in hypersaline anoxic deep-sea basins, Eastern Mediterranean Sea.

Filker S, Stock A, Breiner HW, Edgcomb V, Orsi W, Yakimov MM, Stoeck T.

Microbiologyopen. 2013 Feb;2(1):54-63. doi: 10.1002/mbo3.56. Epub 2012 Dec 13.


Prevalence of partnerships between bacteria and ciliates in oxygen-depleted marine water columns.

Orsi W, Charvet S, Vd'ačný P, Bernhard JM, Edgcomb VP.

Front Microbiol. 2012 Sep 19;3:341. doi: 10.3389/fmicb.2012.00341. eCollection 2012.


Effect of oxygen minimum zone formation on communities of marine protists.

Orsi W, Song YC, Hallam S, Edgcomb V.

ISME J. 2012 Aug;6(8):1586-601. doi: 10.1038/ismej.2012.7. Epub 2012 Mar 8.


Denitrification likely catalyzed by endobionts in an allogromiid foraminifer.

Bernhard JM, Edgcomb VP, Casciotti KL, McIlvin MR, Beaudoin DJ.

ISME J. 2012 May;6(5):951-60. doi: 10.1038/ismej.2011.171. Epub 2011 Dec 1.


Microbial eukaryote life in the new hypersaline deep-sea basin Thetis.

Stock A, Breiner HW, Pachiadaki M, Edgcomb V, Filker S, La Cono V, Yakimov MM, Stoeck T.

Extremophiles. 2012 Jan;16(1):21-34. doi: 10.1007/s00792-011-0401-4. Epub 2011 Oct 19.


Class Cariacotrichea, a novel ciliate taxon from the anoxic Cariaco Basin, Venezuela.

Orsi W, Edgcomb V, Faria J, Foissner W, Fowle WH, Hohmann T, Suarez P, Taylor C, Taylor GT, Vd'acný P, Epstein SS.

Int J Syst Evol Microbiol. 2012 Jun;62(Pt 6):1425-33. doi: 10.1099/ijs.0.034710-0. Epub 2011 Aug 12.


Structured multiple endosymbiosis of bacteria and archaea in a ciliate from marine sulfidic sediments: a survival mechanism in low oxygen, sulfidic sediments?

Edgcomb VP, Leadbetter ER, Bourland W, Beaudoin D, Bernhard JM.

Front Microbiol. 2011 Mar 25;2:55. doi: 10.3389/fmicb.2011.00055. eCollection 2011.


Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness.

Edgcomb V, Orsi W, Bunge J, Jeon S, Christen R, Leslin C, Holder M, Taylor GT, Suarez P, Varela R, Epstein S.

ISME J. 2011 Aug;5(8):1344-56. doi: 10.1038/ismej.2011.6. Epub 2011 Mar 10.


Protistan microbial observatory in the Cariaco Basin, Caribbean. II. Habitat specialization.

Orsi W, Edgcomb V, Jeon S, Leslin C, Bunge J, Taylor GT, Varela R, Epstein S.

ISME J. 2011 Aug;5(8):1357-73. doi: 10.1038/ismej.2011.7. Epub 2011 Mar 10.


Accessing marine protists from the anoxic Cariaco Basin.

Edgcomb V, Orsi W, Taylor GT, Vdacny P, Taylor C, Suarez P, Epstein S.

ISME J. 2011 Aug;5(8):1237-41. doi: 10.1038/ismej.2011.10. Epub 2011 Mar 10. No abstract available.


Presence of the oral bacterium Capnocytophaga canimorsus in the tooth plaque of canines.

Dilegge SK, Edgcomb VP, Leadbetter ER.

Vet Microbiol. 2011 May 5;149(3-4):437-45. doi: 10.1016/j.vetmic.2010.12.010. Epub 2010 Dec 14.


Marine subsurface eukaryotes: the fungal majority.

Edgcomb VP, Beaudoin D, Gast R, Biddle JF, Teske A.

Environ Microbiol. 2011 Jan;13(1):172-183. doi: 10.1111/j.1462-2920.2010.02318.x.


Identity of epibiotic bacteria on symbiontid euglenozoans in O2-depleted marine sediments: evidence for symbiont and host co-evolution.

Edgcomb VP, Breglia SA, Yubuki N, Beaudoin D, Patterson DJ, Leander BS, Bernhard JM.

ISME J. 2011 Feb;5(2):231-43. doi: 10.1038/ismej.2010.121. Epub 2010 Aug 5.


Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities.

Stoeck T, Behnke A, Christen R, Amaral-Zettler L, Rodriguez-Mora MJ, Chistoserdov A, Orsi W, Edgcomb VP.

BMC Biol. 2009 Nov 3;7:72. doi: 10.1186/1741-7007-7-72.


A molecular and physiological survey of a diverse collection of hydrothermal vent Thermococcus and Pyrococcus isolates.

Teske A, Edgcomb V, Rivers AR, Thompson JR, de Vera Gomez A, Molyneaux SJ, Wirsen CO.

Extremophiles. 2009 Nov;13(6):905-15. doi: 10.1007/s00792-009-0278-7. Epub 2009 Sep 11.


Vibrio cholerae non-O1, non-O139 associated with seawater and plankton from coastal marine areas of the Caribbean Sea.

Fernández-Delgado M, García-Amado MA, Contreras M, Edgcomb V, Vitelli J, Gueneau P, Suárez P.

Int J Environ Health Res. 2009 Aug;19(4):279-89. doi: 10.1080/09603120802460368.


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