PubMed

El-Gebali S, Mistry J, Bateman A, Eddy SR, Luciani A, Potter SC, Qureshi M, Richardson LJ, Salazar GA, Smart A, Sonnhammer ELL, Hirsh L, Paladin L, Piovesan D, Tosatto SCE, Finn RD.

Nucleic Acids Res. 2019 Jan 8;47(D1):D427-D432. doi: 10.1093/nar/gky995.

Potter SC, Luciani A, Eddy SR, Park Y, Lopez R, Finn RD.

Nucleic Acids Res. 2018 Jul 2;46(W1):W200-W204. doi: 10.1093/nar/gky448.

Nawrocki EP, Jones TA, Eddy SR.

Nucleic Acids Res. 2018 Sep 6;46(15):7970-7976. doi: 10.1093/nar/gky414.

Kalvari I, Argasinska J, Quinones-Olvera N, Nawrocki EP, Rivas E, Eddy SR, Bateman A, Finn RD, Petrov AI.

Nucleic Acids Res. 2018 Jan 4;46(D1):D335-D342. doi: 10.1093/nar/gkx1038.

Weisman CM, Eddy SR.

Curr Biol. 2017 Jul 10;27(13):R661-R663. doi: 10.1016/j.cub.2017.05.056.

Zhang B, Mao YS, Diermeier SD, Novikova IV, Nawrocki EP, Jones TA, Lazar Z, Tung CS, Luo W, Eddy SR, Sanbonmatsu KY, Spector DL.

Cell Rep. 2017 May 23;19(8):1723-1738. doi: 10.1016/j.celrep.2017.05.006.

Rivas E, Clements J, Eddy SR.

Nat Methods. 2017 Jan;14(1):45-48. doi: 10.1038/nmeth.4066. Epub 2016 Nov 7.

Mo A, Luo C, Davis FP, Mukamel EA, Henry GL, Nery JR, Urich MA, Picard S, Lister R, Eddy SR, Beer MA, Ecker JR, Nathans J.

Elife. 2016 Mar 7;5:e11613. doi: 10.7554/eLife.11613.

Finn RD, Coggill P, Eberhardt RY, Eddy SR, Mistry J, Mitchell AL, Potter SC, Punta M, Qureshi M, Sangrador-Vegas A, Salazar GA, Tate J, Bateman A.

Nucleic Acids Res. 2016 Jan 4;44(D1):D279-85. doi: 10.1093/nar/gkv1344. Epub 2015 Dec 15.

Rivas E, Eddy SR.

BMC Bioinformatics. 2015 Dec 10;16:406. doi: 10.1186/s12859-015-0832-5.

Hubley R, Finn RD, Clements J, Eddy SR, Jones TA, Bao W, Smit AF, Wheeler TJ.

Nucleic Acids Res. 2016 Jan 4;44(D1):D81-9. doi: 10.1093/nar/gkv1272. Epub 2015 Nov 26.

Chen X, Jung S, Beh LY, Eddy SR, Landweber LF.

Genome Biol Evol. 2015 Sep 2;7(10):2859-70. doi: 10.1093/gbe/evv172.

Mo A, Mukamel EA, Davis FP, Luo C, Henry GL, Picard S, Urich MA, Nery JR, Sejnowski TJ, Lister R, Eddy SR, Ecker JR, Nathans J.

Neuron. 2015 Jun 17;86(6):1369-84. doi: 10.1016/j.neuron.2015.05.018.

Finn RD, Clements J, Arndt W, Miller BL, Wheeler TJ, Schreiber F, Bateman A, Eddy SR.

Nucleic Acids Res. 2015 Jul 1;43(W1):W30-8. doi: 10.1093/nar/gkv397. Epub 2015 May 5.

Eddy SR.

RNA. 2015 Apr;21(4):605-7. doi: 10.1261/rna.050484.115. No abstract available.

Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD.

Nucleic Acids Res. 2015 Jan;43(Database issue):D130-7. doi: 10.1093/nar/gku1063. Epub 2014 Nov 11.

Eddy SR.

Annu Rev Biophys. 2014;43:433-56. doi: 10.1146/annurev-biophys-051013-022950. Review.

Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M.

Nucleic Acids Res. 2014 Jan;42(Database issue):D222-30. doi: 10.1093/nar/gkt1223. Epub 2013 Nov 27.

Nawrocki EP, Eddy SR.

Bioinformatics. 2013 Nov 15;29(22):2933-5. doi: 10.1093/bioinformatics/btt509. Epub 2013 Sep 4.

Wheeler TJ, Eddy SR.

Bioinformatics. 2013 Oct 1;29(19):2487-9. doi: 10.1093/bioinformatics/btt403. Epub 2013 Jul 9.

Nawrocki EP, Eddy SR.

RNA Biol. 2013 Jul;10(7):1170-9. doi: 10.4161/rna.25038. Epub 2013 May 20. Review.

Davis FP, Eddy SR.

PLoS One. 2013 May 1;8(5):e63407. doi: 10.1371/journal.pone.0063407. Print 2013.

Mistry J, Finn RD, Eddy SR, Bateman A, Punta M.

Nucleic Acids Res. 2013 Jul;41(12):e121. doi: 10.1093/nar/gkt263. Epub 2013 Apr 17.

Eddy SR.

Curr Biol. 2013 Apr 8;23(7):R259-61. doi: 10.1016/j.cub.2013.03.023.

Swart EC, Bracht JR, Magrini V, Minx P, Chen X, Zhou Y, Khurana JS, Goldman AD, Nowacki M, Schotanus K, Jung S, Fulton RS, Ly A, McGrath S, Haub K, Wiggins JL, Storton D, Matese JC, Parsons L, Chang WJ, Bowen MS, Stover NA, Jones TA, Eddy SR, Herrick GA, Doak TG, Wilson RK, Mardis ER, Landweber LF.

PLoS Biol. 2013;11(1):e1001473. doi: 10.1371/journal.pbio.1001473. Epub 2013 Jan 29.

Wheeler TJ, Clements J, Eddy SR, Hubley R, Jones TA, Jurka J, Smit AF, Finn RD.

Nucleic Acids Res. 2013 Jan;41(Database issue):D70-82. doi: 10.1093/nar/gks1265. Epub 2012 Nov 30.

Eddy SR.

Curr Biol. 2012 Nov 6;22(21):R898-9. doi: 10.1016/j.cub.2012.10.002. No abstract available.

Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, Eddy SR, Gardner PP, Bateman A.

Nucleic Acids Res. 2013 Jan;41(Database issue):D226-32. doi: 10.1093/nar/gks1005. Epub 2012 Nov 3.

Henry GL, Davis FP, Picard S, Eddy SR.

Nucleic Acids Res. 2012 Oct;40(19):9691-704. doi: 10.1093/nar/gks671. Epub 2012 Aug 1.

Rivas E, Lang R, Eddy SR.

RNA. 2012 Feb;18(2):193-212. doi: 10.1261/rna.030049.111. Epub 2011 Dec 22.

Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer EL, Eddy SR, Bateman A, Finn RD.

Nucleic Acids Res. 2012 Jan;40(Database issue):D290-301. doi: 10.1093/nar/gkr1065. Epub 2011 Nov 29.

Eddy SR.

PLoS Comput Biol. 2011 Oct;7(10):e1002195. doi: 10.1371/journal.pcbi.1002195. Epub 2011 Oct 20.

Kolbe DL, Eddy SR.

Bioinformatics. 2011 Nov 15;27(22):3102-9. doi: 10.1093/bioinformatics/btr545. Epub 2011 Sep 28.

Jung S, Swart EC, Minx PJ, Magrini V, Mardis ER, Landweber LF, Eddy SR.

Nucleic Acids Res. 2011 Sep 1;39(17):7529-47. doi: 10.1093/nar/gkr501. Epub 2011 Jun 28.

Finn RD, Clements J, Eddy SR.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W29-37. doi: 10.1093/nar/gkr367. Epub 2011 May 18.

Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, Bateman A.

Nucleic Acids Res. 2011 Jan;39(Database issue):D141-5. doi: 10.1093/nar/gkq1129. Epub 2010 Nov 9.

Johnson LS, Eddy SR, Portugaly E.

BMC Bioinformatics. 2010 Aug 18;11:431. doi: 10.1186/1471-2105-11-431.

Eddy SR.

Genome Inform. 2009 Oct;23(1):205-11.

Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A.

Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22. doi: 10.1093/nar/gkp985. Epub 2009 Nov 17.

Davis FP, Eddy SR.

Bioinformatics. 2009 Jul 1;25(13):1647-54. doi: 10.1093/bioinformatics/btp288. Epub 2009 May 4.

Nawrocki EP, Kolbe DL, Eddy SR.

Bioinformatics. 2009 May 15;25(10):1335-7. doi: 10.1093/bioinformatics/btp157. Epub 2009 Mar 23. Erratum in: Bioinformatics. 2009 Jul 1;25(13):1713.

Kolbe DL, Eddy SR.

Bioinformatics. 2009 May 15;25(10):1236-43. doi: 10.1093/bioinformatics/btp154. Epub 2009 Mar 20.

Jones TA, Otto W, Marz M, Eddy SR, Stadler PF.

RNA Biol. 2009 Jan-Mar;6(1):5-8. Epub 2009 Jan 26. Review.

Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, Bateman A.

Nucleic Acids Res. 2009 Jan;37(Database issue):D136-40. doi: 10.1093/nar/gkn766. Epub 2008 Oct 25.

Rivas E, Eddy SR.

PLoS Comput Biol. 2008 Sep 19;4(9):e1000172. doi: 10.1371/journal.pcbi.1000172.

Eddy SR.

PLoS Comput Biol. 2008 May 30;4(5):e1000069. doi: 10.1371/journal.pcbi.1000069.

Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A.

Nucleic Acids Res. 2008 Jan;36(Database issue):D281-8. Epub 2007 Nov 26.

Stricklin SL, Griffiths-Jones S, Eddy SR.

WormBook. 2005 Jun 25:1-7. Review.

Nawrocki EP, Eddy SR.

PLoS Comput Biol. 2007 Mar 30;3(3):e56. Epub 2007 Feb 7.

Eddy SR.

Cold Spring Harb Symp Quant Biol. 2006;71:117-28.