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Items: 1 to 50 of 519

1.

Genomic Decoding of Neuronal Depolarization by Stimulus-Specific NPAS4 Heterodimers.

Brigidi GS, Hayes MGB, Delos Santos NP, Hartzell AL, Texari L, Lin PA, Bartlett A, Ecker JR, Benner C, Heinz S, Bloodgood BL.

Cell. 2019 Oct 3;179(2):373-391.e27. doi: 10.1016/j.cell.2019.09.004.

PMID:
31585079
2.

A systematic review and thematic synthesis of Canada's LGBTQ2S+ employment, labour market and earnings literature.

Waite S, Ecker J, Ross LE.

PLoS One. 2019 Oct 2;14(10):e0223372. doi: 10.1371/journal.pone.0223372. eCollection 2019.

3.

Simultaneous profiling of 3D genome structure and DNA methylation in single human cells.

Lee DS, Luo C, Zhou J, Chandran S, Rivkin A, Bartlett A, Nery JR, Fitzpatrick C, O'Connor C, Dixon JR, Ecker JR.

Nat Methods. 2019 Oct;16(10):999-1006. doi: 10.1038/s41592-019-0547-z. Epub 2019 Sep 9.

PMID:
31501549
4.

Auxin-sensitive Aux/IAA proteins mediate drought tolerance in Arabidopsis by regulating glucosinolate levels.

Salehin M, Li B, Tang M, Katz E, Song L, Ecker JR, Kliebenstein DJ, Estelle M.

Nat Commun. 2019 Sep 6;10(1):4021. doi: 10.1038/s41467-019-12002-1.

5.

Diversity and dynamics of DNA methylation: epigenomic resources and tools for crop breeding.

Kawakatsu T, Ecker JR.

Breed Sci. 2019 Jun;69(2):191-204. doi: 10.1270/jsbbs.19005. Epub 2019 May 14. Review.

6.

Structural and antigenic characterization of a computationally-optimized H5 hemagglutinin influenza vaccine.

Bar-Peled Y, Huang J, Nuñez IA, Pierce SR, Ecker JW, Ross TM, Mousa JJ.

Vaccine. 2019 Sep 24;37(41):6022-6029. doi: 10.1016/j.vaccine.2019.08.062. Epub 2019 Aug 31.

PMID:
31481254
7.

Epigenetic silencing of a multifunctional plant stress regulator.

Zander M, Willige BC, He Y, Nguyen TA, Langford AE, Nehring R, Howell E, McGrath R, Bartlett A, Castanon R, Nery JR, Chen H, Zhang Z, Jupe F, Stepanova A, Schmitz RJ, Lewsey MG, Chory J, Ecker JR.

Elife. 2019 Aug 16;8. pii: e47835. doi: 10.7554/eLife.47835.

8.

The lipidome of primary murine white, brite, and brown adipocytes-Impact of beta-adrenergic stimulation.

Schweizer S, Liebisch G, Oeckl J, Hoering M, Seeliger C, Schiebel C, Klingenspor M, Ecker J.

PLoS Biol. 2019 Aug 1;17(8):e3000412. doi: 10.1371/journal.pbio.3000412. eCollection 2019 Aug.

9.

Routine RNA sequencing of formalin-fixed paraffin-embedded specimens in neuropathology diagnostics identifies diagnostically and therapeutically relevant gene fusions.

Stichel D, Schrimpf D, Casalini B, Meyer J, Wefers AK, Sievers P, Korshunov A, Koelsche C, Reuss DE, Reinhardt A, Ebrahimi A, Fernández-Klett F, Kessler T, Sturm D, Ecker J, Milde T, Herold-Mende C, Witt O, Pfister SM, Wick W, Jones DTW, von Deimling A, Sahm F.

Acta Neuropathol. 2019 Jul 5. doi: 10.1007/s00401-019-02039-3. [Epub ahead of print]

PMID:
31278449
10.

Robust single-cell Hi-C clustering by convolution- and random-walk-based imputation.

Zhou J, Ma J, Chen Y, Cheng C, Bao B, Peng J, Sejnowski TJ, Dixon JR, Ecker JR.

Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):14011-14018. doi: 10.1073/pnas.1901423116. Epub 2019 Jun 24.

11.

Lessons learned from piloting a pain assessment program for high frequency emergency department users.

Cherner R, Ecker J, Louw A, Aubry T, Poulin P, Smyth C.

Scand J Pain. 2019 Jul 26;19(3):545-552. doi: 10.1515/sjpain-2018-0128.

PMID:
31031261
12.

Elicitation of Broadly Protective Antibodies following Infection with Influenza Viruses Expressing H1N1 Computationally Optimized Broadly Reactive Hemagglutinin Antigens.

Sautto GA, Kirchenbaum GA, Ecker JW, Bebin-Blackwell AG, Pierce SR, Ross TM.

Immunohorizons. 2018 Aug 27;2(7):226-237. doi: 10.4049/immunohorizons.1800044.

PMID:
31022693
13.

Pathways Into Homelessness Among LGBTQ2S Adults.

Ecker J, Aubry T, Sylvestre J.

J Homosex. 2019 Apr 19:1-19. doi: 10.1080/00918369.2019.1600902. [Epub ahead of print]

PMID:
31002582
14.

Substance use disorders in pregnancy: clinical, ethical, and research imperatives of the opioid epidemic: a report of a joint workshop of the Society for Maternal-Fetal Medicine, American College of Obstetricians and Gynecologists, and American Society of Addiction Medicine.

Ecker J, Abuhamad A, Hill W, Bailit J, Bateman BT, Berghella V, Blake-Lamb T, Guille C, Landau R, Minkoff H, Prabhu M, Rosenthal E, Terplan M, Wright TE, Yonkers KA.

Am J Obstet Gynecol. 2019 Jul;221(1):B5-B28. doi: 10.1016/j.ajog.2019.03.022. Epub 2019 Mar 27. No abstract available.

PMID:
30928567
15.

Quantification of Fecal Short Chain Fatty Acids by Liquid Chromatography Tandem Mass Spectrometry-Investigation of Pre-Analytic Stability.

Liebisch G, Ecker J, Roth S, Schweizer S, Öttl V, Schött HF, Yoon H, Haller D, Holler E, Burkhardt R, Matysik S.

Biomolecules. 2019 Mar 28;9(4). pii: E121. doi: 10.3390/biom9040121.

16.

Nocturnal desaturation early after delivery: impact of delivery type and the beneficial effects of Fowler's position.

Fujita N, Grabitz SD, Shin CH, Hess PE, Mueller N, Bateman BT, Ecker JL, Takahashi O, Houle TT, Nagasaka Y, Eikermann M.

Br J Anaesth. 2019 Apr;122(4):e64-e66. doi: 10.1016/j.bja.2019.01.007. Epub 2019 Feb 13. No abstract available.

17.

Retinoblastoma with late metastatic spread-a case report.

Hofer S, Diebold J, Temming P, Lohmann D, Howell J, Moulin A, Beck-Popovic M, Sahm F, Milde T, Ecker J.

Pediatr Blood Cancer. 2019 Jun;66(6):e27656. doi: 10.1002/pbc.27656. Epub 2019 Feb 5. No abstract available.

PMID:
30724037
18.

The complex architecture and epigenomic impact of plant T-DNA insertions.

Jupe F, Rivkin AC, Michael TP, Zander M, Motley ST, Sandoval JP, Slotkin RK, Chen H, Castanon R, Nery JR, Ecker JR.

PLoS Genet. 2019 Jan 18;15(1):e1007819. doi: 10.1371/journal.pgen.1007819. eCollection 2019 Jan.

19.

Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons.

Luo C, Lee QY, Wapinski O, Castanon R, Nery JR, Mall M, Kareta MS, Cullen SM, Goodell MA, Chang HY, Wernig M, Ecker JR.

Elife. 2019 Jan 15;8. pii: e40197. doi: 10.7554/eLife.40197.

20.

The Senescence-associated Secretory Phenotype Mediates Oncogene-induced Senescence in Pediatric Pilocytic Astrocytoma.

Buhl JL, Selt F, Hielscher T, Guiho R, Ecker J, Sahm F, Ridinger J, Riehl D, Usta D, Ismer B, Sommerkamp AC, Martinez-Barbera JP, Wefers AK, Remke M, Picard D, Pusch S, Gronych J, Oehme I, van Tilburg CM, Kool M, Kuhn D, Capper D, von Deimling A, Schuhmann MU, Herold-Mende C, Korshunov A, Brummer T, Pfister SM, Jones DTW, Witt O, Milde T.

Clin Cancer Res. 2019 Mar 15;25(6):1851-1866. doi: 10.1158/1078-0432.CCR-18-1965. Epub 2018 Dec 7.

PMID:
30530705
21.

Nutritional Value of the Duckweed Species of the Genus Wolffia (Lemnaceae) as Human Food.

Appenroth KJ, Sree KS, Bog M, Ecker J, Seeliger C, Böhm V, Lorkowski S, Sommer K, Vetter W, Tolzin-Banasch K, Kirmse R, Leiterer M, Dawczynski C, Liebisch G, Jahreis G.

Front Chem. 2018 Oct 29;6:483. doi: 10.3389/fchem.2018.00483. eCollection 2018.

22.

OGT binds a conserved C-terminal domain of TET1 to regulate TET1 activity and function in development.

Hrit J, Goodrich L, Li C, Wang BA, Nie J, Cui X, Martin EA, Simental E, Fernandez J, Liu MY, Nery JR, Castanon R, Kohli RM, Tretyakova N, He C, Ecker JR, Goll M, Panning B.

Elife. 2018 Oct 16;7. pii: e34870. doi: 10.7554/eLife.34870.

23.

Dynamic DNA methylation: In the right place at the right time.

Luo C, Hajkova P, Ecker JR.

Science. 2018 Sep 28;361(6409):1336-1340. doi: 10.1126/science.aat6806. Review.

24.

Robust single-cell DNA methylome profiling with snmC-seq2.

Luo C, Rivkin A, Zhou J, Sandoval JP, Kurihara L, Lucero J, Castanon R, Nery JR, Pinto-Duarte A, Bui B, Fitzpatrick C, O'Connor C, Ruga S, Van Eden ME, Davis DA, Mash DC, Behrens MM, Ecker JR.

Nat Commun. 2018 Sep 20;9(1):3824. doi: 10.1038/s41467-018-06355-2.

25.

The gut microbiota promotes hepatic fatty acid desaturation and elongation in mice.

Kindt A, Liebisch G, Clavel T, Haller D, Hörmannsperger G, Yoon H, Kolmeder D, Sigruener A, Krautbauer S, Seeliger C, Ganzha A, Schweizer S, Morisset R, Strowig T, Daniel H, Helm D, Küster B, Krumsiek J, Ecker J.

Nat Commun. 2018 Sep 14;9(1):3760. doi: 10.1038/s41467-018-05767-4.

26.

Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells.

Sabbagh MF, Heng JS, Luo C, Castanon RG, Nery JR, Rattner A, Goff LA, Ecker JR, Nathans J.

Elife. 2018 Sep 6;7. pii: e36187. doi: 10.7554/eLife.36187.

27.

Profiling Interactome Networks with the HaloTag-NAPPA In Situ Protein Array.

Yazaki J, Galli M, Kim AY, Ecker JR.

Curr Protoc Plant Biol. 2018 Sep;3(3):e20071. doi: 10.1002/cppb.20071. Epub 2018 Aug 14.

PMID:
30106517
28.

The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism.

Just S, Mondot S, Ecker J, Wegner K, Rath E, Gau L, Streidl T, Hery-Arnaud G, Schmidt S, Lesker TR, Bieth V, Dunkel A, Strowig T, Hofmann T, Haller D, Liebisch G, Gérard P, Rohn S, Lepage P, Clavel T.

Microbiome. 2018 Aug 2;6(1):134. doi: 10.1186/s40168-018-0510-8.

29.

Molecular Diagnostics in Pediatric Brain Tumors: Impact on Diagnosis and Clinical Decision-Making - A Selected Case Series.

Bächli H, Ecker J, van Tilburg C, Sturm D, Selt F, Sahm F, Koelsche C, Grund K, Sutter C, Pietsch T, Witt H, Herold-Mende C, von Deimling A, Jones D, Pfister S, Witt O, Milde T.

Klin Padiatr. 2018 Oct;230(6):305-313. doi: 10.1055/a-0637-9653. Epub 2018 Jul 11.

PMID:
29996150
30.

Risk of Preeclampsia and Pregnancy Complications in Women With a History of Acute Kidney Injury.

Tangren JS, Wan Md Adnan WAH, Powe CE, Ecker J, Bramham K, Hladunewich MA, Ankers E, Karumanchi SA, Thadhani R.

Hypertension. 2018 Aug;72(2):451-459. doi: 10.1161/HYPERTENSIONAHA.118.11161. Epub 2018 Jun 18.

31.

Primary intracranial spindle cell sarcoma with rhabdomyosarcoma-like features share a highly distinct methylation profile and DICER1 mutations.

Koelsche C, Mynarek M, Schrimpf D, Bertero L, Serrano J, Sahm F, Reuss DE, Hou Y, Baumhoer D, Vokuhl C, Flucke U, Petersen I, Brück W, Rutkowski S, Zambrano SC, Garcia Leon JL, Diaz Coronado RY, Gessler M, Tirado OM, Mora J, Alonso J, Garcia Del Muro X, Esteller M, Sturm D, Ecker J, Milde T, Pfister SM, Korshunov A, Snuderl M, Mechtersheimer G, Schüller U, Jones DTW, von Deimling A.

Acta Neuropathol. 2018 Aug;136(2):327-337. doi: 10.1007/s00401-018-1871-6. Epub 2018 Jun 7.

32.

Author Correction: A B-ARR-mediated cytokinin transcriptional network directs hormone cross-regulation and shoot development.

Xie M, Chen H, Huang L, O'Neil RC, Shokhirev MN, Ecker JR.

Nat Commun. 2018 May 22;9(1):2075. doi: 10.1038/s41467-018-04514-z.

33.

A B-ARR-mediated cytokinin transcriptional network directs hormone cross-regulation and shoot development.

Xie M, Chen H, Huang L, O'Neil RC, Shokhirev MN, Ecker JR.

Nat Commun. 2018 Apr 23;9(1):1604. doi: 10.1038/s41467-018-03921-6. Erratum in: Nat Commun. 2018 May 22;9(1):2075.

34.

Lignin peroxidase ligand access channel dysfunction in the presence of atrazine.

Ecker J, Fülöp L.

Sci Rep. 2018 Apr 16;8(1):5989. doi: 10.1038/s41598-018-24478-w.

35.

Perceptions of Housing and Shelter among People with Histories of Unstable Housing in three Cities in Canada: A Qualitative Study.

Sylvestre J, Klodawsky F, Gogosis E, Ecker J, Polillo A, Czechowski K, Agha A, Shankar S, To M, Gadermann A, Palepu A, Hwang S.

Am J Community Psychol. 2018 Jun;61(3-4):445-458. doi: 10.1002/ajcp.12243. Epub 2018 Mar 25.

PMID:
29577343
36.

Metabolic and Hypertensive Complications of Pregnancy in Women with Nephrolithiasis.

Tangren JS, Powe CE, Ecker J, Bramham K, Ankers E, Karumanchi SA, Thadhani R.

Clin J Am Soc Nephrol. 2018 Apr 6;13(4):612-619. doi: 10.2215/CJN.12171017. Epub 2018 Feb 22.

37.

High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell.

Michael TP, Jupe F, Bemm F, Motley ST, Sandoval JP, Lanz C, Loudet O, Weigel D, Ecker JR.

Nat Commun. 2018 Feb 7;9(1):541. doi: 10.1038/s41467-018-03016-2.

38.

Sexual Intimacy, Mental Illness, and Homelessness.

Ecker J, Cherner R, Rae J, Czechowski K.

Am J Community Psychol. 2018 Mar;61(1-2):131-140. doi: 10.1002/ajcp.12213. Epub 2017 Dec 15. Review.

PMID:
29243831
39.

Challenges and recommendations for epigenomics in precision health.

Carter AC, Chang HY, Church G, Dombkowski A, Ecker JR, Gil E, Giresi PG, Greely H, Greenleaf WJ, Hacohen N, He C, Hill D, Ko J, Kohane I, Kundaje A, Palmer M, Snyder MP, Tung J, Urban A, Vidal M, Wong W.

Nat Biotechnol. 2017 Dec 8;35(12):1128-1132. doi: 10.1038/nbt.4030. No abstract available.

40.

A Review of the Literature on LGBTQ Adults Who Experience Homelessness.

Ecker J, Aubry T, Sylvestre J.

J Homosex. 2019;66(3):297-323. doi: 10.1080/00918369.2017.1413277. Epub 2018 Jan 3. Review.

PMID:
29206576
41.

Piecing together cis-regulatory networks: insights from epigenomics studies in plants.

Huang SC, Ecker JR.

Wiley Interdiscip Rev Syst Biol Med. 2018 May;10(3):e1411. doi: 10.1002/wsbm.1411. Epub 2017 Nov 30. Review.

PMID:
29194997
42.

Hospital volume and cesarean delivery among low-risk women in a nationwide sample.

Clapp MA, James KE, Melamed A, Ecker JL, Kaimal AJ.

J Perinatol. 2018 Feb;38(2):127-131. doi: 10.1038/jp.2017.173. Epub 2017 Nov 9.

PMID:
29120454
43.

The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas.

Ecker JR, Geschwind DH, Kriegstein AR, Ngai J, Osten P, Polioudakis D, Regev A, Sestan N, Wickersham IR, Zeng H.

Neuron. 2017 Nov 1;96(3):542-557. doi: 10.1016/j.neuron.2017.10.007. Review.

44.

Scaphoid Union: The Role of Wrist Arthroscopy.

Ecker J.

Hand Clin. 2017 Nov;33(4):677-686. doi: 10.1016/j.hcl.2017.07.001. Review.

PMID:
28991580
45.

Dynamic DNA methylation reconfiguration during seed development and germination.

Kawakatsu T, Nery JR, Castanon R, Ecker JR.

Genome Biol. 2017 Sep 15;18(1):171. doi: 10.1186/s13059-017-1251-x.

46.

Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex.

Luo C, Keown CL, Kurihara L, Zhou J, He Y, Li J, Castanon R, Lucero J, Nery JR, Sandoval JP, Bui B, Sejnowski TJ, Harkins TT, Mukamel EA, Behrens MM, Ecker JR.

Science. 2017 Aug 11;357(6351):600-604. doi: 10.1126/science.aan3351.

47.

Mapping genome-wide transcription-factor binding sites using DAP-seq.

Bartlett A, O'Malley RC, Huang SC, Galli M, Nery JR, Gallavotti A, Ecker JR.

Nat Protoc. 2017 Aug;12(8):1659-1672. doi: 10.1038/nprot.2017.055. Epub 2017 Jul 20.

48.

When Guild Interests and Professional Obligations Collide.

Minkoff H, Ecker J.

Obstet Gynecol. 2017 Aug;130(2):454-457. doi: 10.1097/AOG.0000000000002138.

PMID:
28697119
49.

CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping.

Trigg SA, Garza RM, MacWilliams A, Nery JR, Bartlett A, Castanon R, Goubil A, Feeney J, O'Malley R, Huang SC, Zhang ZZ, Galli M, Ecker JR.

Nat Methods. 2017 Aug;14(8):819-825. doi: 10.1038/nmeth.4343. Epub 2017 Jun 26.

50.

A subset of ipRGCs regulates both maturation of the circadian clock and segregation of retinogeniculate projections in mice.

Chew KS, Renna JM, McNeill DS, Fernandez DC, Keenan WT, Thomsen MB, Ecker JL, Loevinsohn GS, VanDunk C, Vicarel DC, Tufford A, Weng S, Gray PA, Cayouette M, Herzog ED, Zhao H, Berson DM, Hattar S.

Elife. 2017 Jun 15;6. pii: e22861. doi: 10.7554/eLife.22861.

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