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Items: 26

1.

Genomic and epigenomic mapping of leptin-responsive neuronal populations involved in body weight regulation.

Inoue F, Eckalbar WL, Wang Y, Murphy KK, Matharu N, Vaisse C, Ahituv N.

Nat Metab. 2019 Apr;1(4):475-484. doi: 10.1038/s42255-019-0051-x. Epub 2019 Apr 8.

PMID:
31535083
2.

Comparative genomic characterization of the multimammate mouse Mastomys coucha.

Hardin A, Nevonen KA, Eckalbar WL, Carbone L, Ahituv N.

Mol Biol Evol. 2019 Aug 19. pii: msz188. doi: 10.1093/molbev/msz188. [Epub ahead of print]

PMID:
31424545
3.

Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards.

Lind AL, Lai YYY, Mostovoy Y, Holloway AK, Iannucci A, Mak ACY, Fondi M, Orlandini V, Eckalbar WL, Milan M, Rovatsos M, Kichigin IG, Makunin AI, Johnson Pokorná M, Altmanová M, Trifonov VA, Schijlen E, Kratochvíl L, Fani R, Velenský P, Rehák I, Patarnello T, Jessop TS, Hicks JW, Ryder OA, Mendelson JR 3rd, Ciofi C, Kwok PY, Pollard KS, Bruneau BG.

Nat Ecol Evol. 2019 Aug;3(8):1241-1252. doi: 10.1038/s41559-019-0945-8. Epub 2019 Jul 29.

PMID:
31358948
4.

The epigenetic regulator ATF7ip inhibits Il2 expression, regulating Th17 responses.

Sin JH, Zuckerman C, Cortez JT, Eckalbar WL, Erle DJ, Anderson MS, Waterfield MR.

J Exp Med. 2019 Sep 2;216(9):2024-2037. doi: 10.1084/jem.20182316. Epub 2019 Jun 19.

PMID:
31217192
5.

Singling out Th2 cells in eosinophilic esophagitis.

Eckalbar WL, Erle DJ.

J Clin Invest. 2019 Apr 8;129(5):1830-1832. doi: 10.1172/JCI128479. eCollection 2019 Apr 8.

6.

CRISPR-mediated activation of a promoter or enhancer rescues obesity caused by haploinsufficiency.

Matharu N, Rattanasopha S, Tamura S, Maliskova L, Wang Y, Bernard A, Hardin A, Eckalbar WL, Vaisse C, Ahituv N.

Science. 2019 Jan 18;363(6424). pii: eaau0629. doi: 10.1126/science.aau0629. Epub 2018 Dec 13.

7.

Integrative approach identifies corticosteroid response variant in diverse populations with asthma.

Levin AM, Gui H, Hernandez-Pacheco N, Yang M, Xiao S, Yang JJ, Hochstadt S, Barczak AJ, Eckalbar WL, Rynkowski D, Samedy LA, Kwok PY, Pino-Yanes M, Erle DJ, Lanfear DE, Burchard EG, Williams LK.

J Allergy Clin Immunol. 2019 May;143(5):1791-1802. doi: 10.1016/j.jaci.2018.09.034. Epub 2018 Oct 24.

PMID:
30367910
8.

Tissue signals imprint ILC2 identity with anticipatory function.

Ricardo-Gonzalez RR, Van Dyken SJ, Schneider C, Lee J, Nussbaum JC, Liang HE, Vaka D, Eckalbar WL, Molofsky AB, Erle DJ, Locksley RM.

Nat Immunol. 2018 Oct;19(10):1093-1099. doi: 10.1038/s41590-018-0201-4. Epub 2018 Sep 10.

9.

Whole-Genome Sequencing of Pharmacogenetic Drug Response in Racially Diverse Children with Asthma.

Mak ACY, White MJ, Eckalbar WL, Szpiech ZA, Oh SS, Pino-Yanes M, Hu D, Goddard P, Huntsman S, Galanter J, Wu AC, Himes BE, Germer S, Vogel JM, Bunting KL, Eng C, Salazar S, Keys KL, Liberto J, Nuckton TJ, Nguyen TA, Torgerson DG, Kwok PY, Levin AM, Celedón JC, Forno E, Hakonarson H, Sleiman PM, Dahlin A, Tantisira KG, Weiss ST, Serebrisky D, Brigino-Buenaventura E, Farber HJ, Meade K, Lenoir MA, Avila PC, Sen S, Thyne SM, Rodriguez-Cintron W, Winkler CA, Moreno-Estrada A, Sandoval K, Rodriguez-Santana JR, Kumar R, Williams LK, Ahituv N, Ziv E, Seibold MA, Darnell RB, Zaitlen N, Hernandez RD, Burchard EG; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium.

Am J Respir Crit Care Med. 2018 Jun 15;197(12):1552-1564. doi: 10.1164/rccm.201712-2529OC.

10.

Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards.

Tollis M, Hutchins ED, Stapley J, Rupp SM, Eckalbar WL, Maayan I, Lasku E, Infante CR, Dennis SR, Robertson JA, May CM, Crusoe MR, Bermingham E, DeNardo DF, Hsieh ST, Kulathinal RJ, McMillan WO, Menke DB, Pratt SC, Rawls JA, Sanjur O, Wilson-Rawls J, Wilson Sayres MA, Fisher RE, Kusumi K.

Genome Biol Evol. 2018 Feb 1;10(2):489-506. doi: 10.1093/gbe/evy013.

11.

Use antibiotics in cell culture with caution: genome-wide identification of antibiotic-induced changes in gene expression and regulation.

Ryu AH, Eckalbar WL, Kreimer A, Yosef N, Ahituv N.

Sci Rep. 2017 Aug 8;7(1):7533. doi: 10.1038/s41598-017-07757-w.

12.

Corrigendum to "Dynamics of an SIR model with vaccination dependent on past prevalence with high order distributed delay" [BioSystems 129 (2015) 50-65].

Eckalbar JC, Eckalbar WL.

Biosystems. 2017 Jan;151:53. doi: 10.1016/j.biosystems.2016.11.005. Epub 2016 Dec 7. No abstract available.

PMID:
27939914
13.

Genomic Characterization of Metformin Hepatic Response.

Luizon MR, Eckalbar WL, Wang Y, Jones SL, Smith RP, Laurance M, Lin L, Gallins PJ, Etheridge AS, Wright F, Zhou Y, Molony C, Innocenti F, Yee SW, Giacomini KM, Ahituv N.

PLoS Genet. 2016 Nov 30;12(11):e1006449. doi: 10.1371/journal.pgen.1006449. eCollection 2016 Nov.

14.

Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis.

Hutchins ED, Eckalbar WL, Wolter JM, Mangone M, Kusumi K.

BMC Genomics. 2016 May 5;17:339. doi: 10.1186/s12864-016-2640-3.

15.

Transcriptomic and epigenomic characterization of the developing bat wing.

Eckalbar WL, Schlebusch SA, Mason MK, Gill Z, Parker AV, Booker BM, Nishizaki S, Muswamba-Nday C, Terhune E, Nevonen KA, Makki N, Friedrich T, VanderMeer JE, Pollard KS, Carbone L, Wall JD, Illing N, Ahituv N.

Nat Genet. 2016 May;48(5):528-36. doi: 10.1038/ng.3537. Epub 2016 Mar 28.

16.

Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus.

Booker BM, Friedrich T, Mason MK, VanderMeer JE, Zhao J, Eckalbar WL, Logan M, Illing N, Pollard KS, Ahituv N.

PLoS Genet. 2016 Mar 28;12(3):e1005738. doi: 10.1371/journal.pgen.1005738. eCollection 2016 Mar.

17.

A genome-wide association study identifies four novel susceptibility loci underlying inguinal hernia.

Jorgenson E, Makki N, Shen L, Chen DC, Tian C, Eckalbar WL, Hinds D, Ahituv N, Avins A.

Nat Commun. 2015 Dec 21;6:10130. doi: 10.1038/ncomms10130.

18.

A PAX1 enhancer locus is associated with susceptibility to idiopathic scoliosis in females.

Sharma S, Londono D, Eckalbar WL, Gao X, Zhang D, Mauldin K, Kou I, Takahashi A, Matsumoto M, Kamiya N, Murphy KK, Cornelia R; TSRHC Scoliosis Clinical Group; Japan Scoliosis Clinical Research Group, Herring JA, Burns D, Ahituv N, Ikegawa S, Gordon D, Wise CA.

Nat Commun. 2015 Mar 18;6:6452. doi: 10.1038/ncomms7452.

19.

Dynamics of an SIR model with vaccination dependent on past prevalence with high-order distributed delay.

Eckalbar JC, Eckalbar WL.

Biosystems. 2015 Mar;129:50-65. doi: 10.1016/j.biosystems.2014.12.004. Epub 2014 Dec 30. Erratum in: Biosystems. 2017 Jan;151:53.

PMID:
25555542
20.

Genome-wide discovery of drug-dependent human liver regulatory elements.

Smith RP, Eckalbar WL, Morrissey KM, Luizon MR, Hoffmann TJ, Sun X, Jones SL, Force Aldred S, Ramamoorthy A, Desta Z, Liu Y, Skaar TC, Trinklein ND, Giacomini KM, Ahituv N.

PLoS Genet. 2014 Oct 2;10(10):e1004648. doi: 10.1371/journal.pgen.1004648. eCollection 2014 Oct.

21.

Genome-wide distribution of Auts2 binding localizes with active neurodevelopmental genes.

Oksenberg N, Haliburton GD, Eckalbar WL, Oren I, Nishizaki S, Murphy K, Pollard KS, Birnbaum RY, Ahituv N.

Transl Psychiatry. 2014 Sep 2;4:e431. doi: 10.1038/tp.2014.78.

22.

Transcriptomic analysis of tail regeneration in the lizard Anolis carolinensis reveals activation of conserved vertebrate developmental and repair mechanisms.

Hutchins ED, Markov GJ, Eckalbar WL, George RM, King JM, Tokuyama MA, Geiger LA, Emmert N, Ammar MJ, Allen AN, Siniard AL, Corneveaux JJ, Fisher RE, Wade J, DeNardo DF, Rawls JA, Huentelman MJ, Wilson-Rawls J, Kusumi K.

PLoS One. 2014 Aug 20;9(8):e105004. doi: 10.1371/journal.pone.0105004. eCollection 2014.

23.

Scoliosis and segmentation defects of the vertebrae.

Eckalbar WL, Fisher RE, Rawls A, Kusumi K.

Wiley Interdiscip Rev Dev Biol. 2012 May-Jun;1(3):401-23. doi: 10.1002/wdev.34. Epub 2012 Mar 5. Review.

PMID:
23801490
24.

A large-scale view of the evolution of amniote development: insights from somitogenesis in reptiles.

Kusumi K, May CM, Eckalbar WL.

Curr Opin Genet Dev. 2013 Aug;23(4):491-7. doi: 10.1016/j.gde.2013.02.011. Epub 2013 Mar 14. Review.

PMID:
23499412
25.

Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes.

Eckalbar WL, Hutchins ED, Markov GJ, Allen AN, Corneveaux JJ, Lindblad-Toh K, Di Palma F, Alföldi J, Huentelman MJ, Kusumi K.

BMC Genomics. 2013 Jan 23;14:49. doi: 10.1186/1471-2164-14-49.

26.

Somitogenesis in the anole lizard and alligator reveals evolutionary convergence and divergence in the amniote segmentation clock.

Eckalbar WL, Lasku E, Infante CR, Elsey RM, Markov GJ, Allen AN, Corneveaux JJ, Losos JB, DeNardo DF, Huentelman MJ, Wilson-Rawls J, Rawls A, Kusumi K.

Dev Biol. 2012 Mar 1;363(1):308-19. doi: 10.1016/j.ydbio.2011.11.021. Epub 2011 Dec 8.

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