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Items: 38

1.

Epstein-Barr virus BORF2 inhibits cellular APOBEC3B to preserve viral genome integrity.

Cheng AZ, Yockteng-Melgar J, Jarvis MC, Malik-Soni N, Borozan I, Carpenter MA, McCann JL, Ebrahimi D, Shaban NM, Marcon E, Greenblatt J, Brown WL, Frappier L, Harris RS.

Nat Microbiol. 2019 Jan;4(1):78-88. doi: 10.1038/s41564-018-0284-6. Epub 2018 Nov 12.

2.

Genetic and mechanistic basis for APOBEC3H alternative splicing, retrovirus restriction, and counteraction by HIV-1 protease.

Ebrahimi D, Richards CM, Carpenter MA, Wang J, Ikeda T, Becker JT, Cheng AZ, McCann JL, Shaban NM, Salamango DJ, Starrett GJ, Lingappa JR, Yong J, Brown WL, Harris RS.

Nat Commun. 2018 Oct 8;9(1):4137. doi: 10.1038/s41467-018-06594-3.

3.

Intracellular Pathways Involved in Bone Regeneration Triggered by Recombinant Silk-silica Chimeras.

Martín-Moldes Z, Ebrahimi D, Plowright R, Dinjaski N, Perry CC, Buehler MJ, Kaplan DL.

Adv Funct Mater. 2018 Jul 4;28(27). pii: 1702570. doi: 10.1002/adfm.201702570. Epub 2017 Sep 4.

PMID:
30140193
4.

Mutation Signatures Including APOBEC in Cancer Cell Lines.

Jarvis MC, Ebrahimi D, Temiz NA, Harris RS.

JNCI Cancer Spectr. 2018 Jan;2(1). pii: pky002. doi: 10.1093/jncics/pky002. Epub 2018 Mar 17.

5.

Predicting Silk Fiber Mechanical Properties through Multiscale Simulation and Protein Design.

Rim NG, Roberts EG, Ebrahimi D, Dinjaski N, Jacobsen MM, Martín-Moldes Z, Buehler MJ, Kaplan DL, Wong JY.

ACS Biomater Sci Eng. 2017 Aug 14;3(8):1542-1556. doi: 10.1021/acsbiomaterials.7b00292. Epub 2017 Jul 3.

6.

Correction: HIV-1 competition experiments in humanized mice show that APOBEC3H imposes selective pressure and promotes virus adaptation.

Nakano Y, Misawa N, Juarez-Fernandez G, Moriwaki M, Nakaoka S, Funo T, Yamada E, Soper A, Yoshikawa R, Ebrahimi D, Tachiki Y, Iwami S, Harris RS, Koyanagi Y, Sato K.

PLoS Pathog. 2017 Sep 7;13(9):e1006606. doi: 10.1371/journal.ppat.1006606. eCollection 2017 Sep.

7.

Effect of Terminal Modification on the Molecular Assembly and Mechanical Properties of Protein-Based Block Copolymers.

Jacobsen MM, Tokareva OS, Ebrahimi D, Huang W, Ling S, Dinjaski N, Li D, Simon M, Staii C, Buehler MJ, Kaplan DL, Wong JY.

Macromol Biosci. 2017 Sep;17(9). doi: 10.1002/mabi.201700095. Epub 2017 Jun 30.

8.

HIV-1 competition experiments in humanized mice show that APOBEC3H imposes selective pressure and promotes virus adaptation.

Nakano Y, Misawa N, Juarez-Fernandez G, Moriwaki M, Nakaoka S, Funo T, Yamada E, Soper A, Yoshikawa R, Ebrahimi D, Tachiki Y, Iwami S, Harris RS, Koyanagi Y, Sato K.

PLoS Pathog. 2017 May 5;13(5):e1006348. doi: 10.1371/journal.ppat.1006348. eCollection 2017 May. Erratum in: PLoS Pathog. 2017 Sep 7;13(9):e1006606.

9.

Opossum APOBEC1 is a DNA mutator with retrovirus and retroelement restriction activity.

Ikeda T, Shimoda M, Ebrahimi D, VandeBerg JL, Harris RS, Koito A, Maeda K.

Sci Rep. 2017 Apr 21;7:46719. doi: 10.1038/srep46719.

10.

Synergistic Integration of Experimental and Simulation Approaches for the de Novo Design of Silk-Based Materials.

Huang W, Ebrahimi D, Dinjaski N, Tarakanova A, Buehler MJ, Wong JY, Kaplan DL.

Acc Chem Res. 2017 Apr 18;50(4):866-876. doi: 10.1021/acs.accounts.6b00616. Epub 2017 Feb 13. Review.

PMID:
28191922
11.

Predicting rates of in vivo degradation of recombinant spider silk proteins.

Dinjaski N, Ebrahimi D, Qin Z, Giordano JEM, Ling S, Buehler MJ, Kaplan DL.

J Tissue Eng Regen Med. 2018 Jan;12(1):e97-e105. doi: 10.1002/term.2380. Epub 2017 May 23.

PMID:
27943629
12.

Source of CpG Depletion in the HIV-1 Genome.

Alinejad-Rokny H, Anwar F, Waters SA, Davenport MP, Ebrahimi D.

Mol Biol Evol. 2016 Dec;33(12):3205-3212. Epub 2016 Sep 28.

PMID:
27682824
13.

The DNA cytosine deaminase APOBEC3H haplotype I likely contributes to breast and lung cancer mutagenesis.

Starrett GJ, Luengas EM, McCann JL, Ebrahimi D, Temiz NA, Love RP, Feng Y, Adolph MB, Chelico L, Law EK, Carpenter MA, Harris RS.

Nat Commun. 2016 Sep 21;7:12918. doi: 10.1038/ncomms12918.

14.

Silk-Its Mysteries, How It Is Made, and How It Is Used.

Ebrahimi D, Tokareva O, Rim NG, Wong JY, Kaplan DL, Buehler MJ.

ACS Biomater Sci Eng. 2015 Oct 12;1(10):864-876. Epub 2015 Aug 24.

15.

A method to avoid errors associated with the analysis of hypermutated viral sequences by alignment-based methods.

Alinejad-Rokny H, Ebrahimi D.

J Biomed Inform. 2015 Dec;58:220-225. doi: 10.1016/j.jbi.2015.10.008. Epub 2015 Oct 19.

16.

Gas chromatography with parallel hard and soft ionization mass spectrometry.

Hejazi L, Guilhaus M, Hibbert DB, Ebrahimi D.

Rapid Commun Mass Spectrom. 2015 Jan 15;29(1):91-9. doi: 10.1002/rcm.7091.

PMID:
25462368
17.

Linking pig-tailed macaque major histocompatibility complex class I haplotypes and cytotoxic T lymphocyte escape mutations in simian immunodeficiency virus infection.

Gooneratne SL, Alinejad-Rokny H, Ebrahimi D, Bohn PS, Wiseman RW, O'Connor DH, Davenport MP, Kent SJ.

J Virol. 2014 Dec;88(24):14310-25. doi: 10.1128/JVI.02428-14. Epub 2014 Oct 1.

18.

Insights into the motif preference of APOBEC3 enzymes.

Ebrahimi D, Alinejad-Rokny H, Davenport MP.

PLoS One. 2014 Jan 31;9(1):e87679. doi: 10.1371/journal.pone.0087679. eCollection 2014.

19.

Formation constants of copper(II) complexes with tripeptides containing Glu, Gly, and His: potentiometric measurements and modeling by generalized multiplicative analysis of variance.

Khoury RR, Sutton GJ, Ebrahimi D, Hibbert DB.

Inorg Chem. 2014 Feb 3;53(3):1278-87. doi: 10.1021/ic4009575. Epub 2014 Jan 16.

PMID:
24432726
20.

Footprint of APOBEC3 on the genome of human retroelements.

Anwar F, Davenport MP, Ebrahimi D.

J Virol. 2013 Jul;87(14):8195-204. doi: 10.1128/JVI.00298-13. Epub 2013 May 22.

21.

APOBEC3G and APOBEC3F rarely co-mutate the same HIV genome.

Ebrahimi D, Anwar F, Davenport MP.

Retrovirology. 2012 Dec 20;9:113. doi: 10.1186/1742-4690-9-113.

22.

Measurement and modeling of acid dissociation constants of tri-peptides containing Glu, Gly, and His using potentiometry and generalized multiplicative analysis of variance.

Khoury RR, Sutton GJ, Hibbert DB, Ebrahimi D.

Dalton Trans. 2013 Feb 28;42(8):2940-7. doi: 10.1039/c2dt32797j. Epub 2012 Dec 18.

PMID:
23247603
23.

Nanoscale elastic properties of montmorillonite upon water adsorption.

Ebrahimi D, Pellenq RJ, Whittle AJ.

Langmuir. 2012 Dec 11;28(49):16855-63. doi: 10.1021/la302997g. Epub 2012 Nov 26.

PMID:
23181550
24.

Bio-activity of natural polymers from the genus Pistacia: a validated model for their antimicrobial action.

Sharifi MS, Ebrahimi D, Hibbert DB, Hook J, Hazell SL.

Glob J Health Sci. 2011 Dec 29;4(1):149-61. doi: 10.5539/gjhs.v4n1p149.

25.

APOBEC3 has not left an evolutionary footprint on the HIV-1 genome.

Ebrahimi D, Anwar F, Davenport MP.

J Virol. 2011 Sep;85(17):9139-46. doi: 10.1128/JVI.00658-11. Epub 2011 Jun 22.

26.

Mass and relative elution time profiling: two-dimensional analysis of sphingolipids in Alzheimer's disease brains.

Hejazi L, Wong JW, Cheng D, Proschogo N, Ebrahimi D, Garner B, Don AS.

Biochem J. 2011 Aug 15;438(1):165-75. doi: 10.1042/BJ20110566.

PMID:
21639855
27.

Identification of the geometrical isomers of α-linolenic acid using gas chromatography/mass spectrometry with a binary decision tree.

Hejazi L, Hibbert DB, Ebrahimi D.

Talanta. 2011 Jan 30;83(4):1233-8. doi: 10.1016/j.talanta.2010.10.017. Epub 2010 Oct 15.

PMID:
21215858
28.

A probabilistic approach to heroin signatures.

Hibbert DB, Blackmore D, Li J, Ebrahimi D, Collins M, Vujic S, Gavoyannis P.

Anal Bioanal Chem. 2010 Jan;396(2):765-73. doi: 10.1007/s00216-009-3260-4. Epub 2009 Dec 1.

PMID:
19949775
29.

Compatibility of electron ionization and soft ionization methods in gas chromatography/orthogonal time-of-flight mass spectrometry.

Hejazi L, Ebrahimi D, Hibbert DB, Guilhaus M.

Rapid Commun Mass Spectrom. 2009 Jul;23(14):2181-9. doi: 10.1002/rcm.4131.

PMID:
19530152
30.

Discrimination among geometrical isomers of alpha-linolenic acid methyl ester using low energy electron ionization mass spectrometry.

Hejazi L, Ebrahimi D, Guilhaus M, Hibbert DB.

J Am Soc Mass Spectrom. 2009 Jul;20(7):1272-80. doi: 10.1016/j.jasms.2009.02.027. Epub 2009 Feb 28.

31.

Determination of the composition of fatty acid mixtures using GC x FI-MS: a comprehensive two-dimensional separation approach.

Hejazi L, Ebrahimi D, Guilhaus M, Hibbert DB.

Anal Chem. 2009 Feb 15;81(4):1450-8. doi: 10.1021/ac802277c.

PMID:
19146461
32.

Multi-analyte sensing: a chemometrics approach to understanding the merits of electrode arrays versus single electrodes.

Ebrahimi D, Chow E, Gooding JJ, Hibbert DB.

Analyst. 2008 Aug;133(8):1090-6. doi: 10.1039/b804811h. Epub 2008 Jun 19.

PMID:
18645652
33.

Identification of sources of diesel oil spills using parallel factor analysis: a bridge between American Society for Testing and Materials and Nordtest methods.

Ebrahimi D, Hibbert DB.

J Chromatogr A. 2008 Jul 11;1198-1199:181-7. doi: 10.1016/j.chroma.2008.05.016. Epub 2008 May 14.

PMID:
18514675
34.

High throughput screening arrays of rhodium and iridium complexes as catalysts for intramolecular hydroamination using parallel factor analysis.

Ebrahimi D, Kennedy DF, Messerle BA, Hibbert DB.

Analyst. 2008 Jun;133(6):817-22. doi: 10.1039/b719501j. Epub 2008 Mar 13.

PMID:
18493685
35.
36.

Application of N-PLS calibration to the simultaneous determination of Cu(2+), Cd(2+) and Pb(2+) using peptide modified electrochemical sensors.

Chow E, Ebrahimi D, Gooding JJ, Hibbert DB.

Analyst. 2006 Sep;131(9):1051-7. Epub 2006 Jun 23.

PMID:
17047806
37.

Peripheral vision lipreading aid.

Ebrahimi D, Kunov H.

IEEE Trans Biomed Eng. 1991 Oct;38(10):944-52.

PMID:
1837008
38.

Measurement of performance of a peripheral vision lipreading aid.

Kunov H, Ebrahimi D.

Scand Audiol. 1991;20(2):131-7.

PMID:
1842278

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