Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 143

1.

Neuroethics Guiding Principles for the NIH BRAIN Initiative.

Greely HT, Grady C, Ramos KM, Chiong W, Eberwine J, Farahany NA, Johnson LSM, Hyman BT, Hyman SE, Rommelfanger KS, Serrano EE.

J Neurosci. 2018 Dec 12;38(50):10586-10588. doi: 10.1523/JNEUROSCI.2077-18.2018. No abstract available.

2.

The successes and future prospects of the linear antisense RNA amplification methodology.

Li J, Eberwine J.

Nat Protoc. 2018 May;13(5):811-818. doi: 10.1038/nprot.2018.011. Epub 2018 Mar 29.

PMID:
29599441
3.

Efficient Synthesis of Light-Triggered Circular Antisense Oligonucleotides Targeting Cellular Protein Expression.

Yang L, Kim HB, Sul JY, Yeldell SB, Eberwine JH, Dmochowski IJ.

Chembiochem. 2018 Jun 18;19(12):1250-1254. doi: 10.1002/cbic.201800012. Epub 2018 Apr 17.

PMID:
29479781
4.

Pervasive within-Mitochondrion Single-Nucleotide Variant Heteroplasmy as Revealed by Single-Mitochondrion Sequencing.

Morris J, Na YJ, Zhu H, Lee JH, Giang H, Ulyanova AV, Baltuch GH, Brem S, Chen HI, Kung DK, Lucas TH, O'Rourke DM, Wolf JA, Grady MS, Sul JY, Kim J, Eberwine J.

Cell Rep. 2017 Dec 5;21(10):2706-2713. doi: 10.1016/j.celrep.2017.11.031.

5.

The Human Cell Atlas.

Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell P, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, Enard W, Farmer A, Fugger L, Göttgens B, Hacohen N, Haniffa M, Hemberg M, Kim S, Klenerman P, Kriegstein A, Lein E, Linnarsson S, Lundberg E, Lundeberg J, Majumder P, Marioni JC, Merad M, Mhlanga M, Nawijn M, Netea M, Nolan G, Pe'er D, Phillipakis A, Ponting CP, Quake S, Reik W, Rozenblatt-Rosen O, Sanes J, Satija R, Schumacher TN, Shalek A, Shapiro E, Sharma P, Shin JW, Stegle O, Stratton M, Stubbington MJT, Theis FJ, Uhlen M, van Oudenaarden A, Wagner A, Watt F, Weissman J, Wold B, Xavier R, Yosef N; Human Cell Atlas Meeting Participants.

Elife. 2017 Dec 5;6. pii: e27041. doi: 10.7554/eLife.27041.

6.

Down the Rabbit Hole of Single-Cell Genome Analysis.

Eberwine J.

Mol Cell. 2017 May 4;66(3):304-305. doi: 10.1016/j.molcel.2017.04.015.

7.

Primary Cell Culture of Live Neurosurgically Resected Aged Adult Human Brain Cells and Single Cell Transcriptomics.

Spaethling JM, Na YJ, Lee J, Ulyanova AV, Baltuch GH, Bell TJ, Brem S, Chen HI, Dueck H, Fisher SA, Garcia MP, Khaladkar M, Kung DK, Lucas TH Jr, O'Rourke DM, Stefanik D, Wang J, Wolf JA, Bartfai T, Grady MS, Sul JY, Kim J, Eberwine JH.

Cell Rep. 2017 Jan 17;18(3):791-803. doi: 10.1016/j.celrep.2016.12.066.

8.

Assessing characteristics of RNA amplification methods for single cell RNA sequencing.

Dueck HR, Ai R, Camarena A, Ding B, Dominguez R, Evgrafov OV, Fan JB, Fisher SA, Herstein JS, Kim TK, Kim JM, Lin MY, Liu R, Mack WJ, McGroty S, Nguyen JD, Salathia N, Shallcross J, Souaiaia T, Spaethling JM, Walker CP, Wang J, Wang K, Wang W, Wildberg A, Zheng L, Chow RH, Eberwine J, Knowles JA, Zhang K, Kim J.

BMC Genomics. 2016 Nov 24;17(1):966.

9.

Variation is function: Are single cell differences functionally important?: Testing the hypothesis that single cell variation is required for aggregate function.

Dueck H, Eberwine J, Kim J.

Bioessays. 2016 Feb;38(2):172-80. doi: 10.1002/bies.201500124. Epub 2015 Dec 2. Review.

10.

Cellular Deconstruction: Finding Meaning in Individual Cell Variation.

Eberwine J, Kim J.

Trends Cell Biol. 2015 Oct;25(10):569-578. doi: 10.1016/j.tcb.2015.07.004. Review.

11.

Single-cell transcriptomics and functional target validation of brown adipocytes show their complex roles in metabolic homeostasis.

Spaethling JM, Sanchez-Alavez M, Lee J, Xia FC, Dueck H, Wang W, Fisher SA, Sul JY, Seale P, Kim J, Bartfai T, Eberwine J.

FASEB J. 2016 Jan;30(1):81-92. doi: 10.1096/fj.15-273797. Epub 2015 Aug 24.

PMID:
26304220
12.

Live Cell Genomics: RNA Exon-Specific RNA-Binding Protein Isolation.

Bell TJ, Eberwine J.

Methods Mol Biol. 2015;1324:457-68. doi: 10.1007/978-1-4939-2806-4_31.

PMID:
26202289
13.

Live Cell Genomics: Cell-Specific Transcriptome Capture in Live Tissues and Cells.

Bell TJ, Eberwine J.

Methods Mol Biol. 2015;1324:447-56. doi: 10.1007/978-1-4939-2806-4_30. Review.

PMID:
26202288
14.

Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation.

Dueck H, Khaladkar M, Kim TK, Spaethling JM, Francis C, Suresh S, Fisher SA, Seale P, Beck SG, Bartfai T, Kuhn B, Eberwine J, Kim J.

Genome Biol. 2015 Jun 9;16:122. doi: 10.1186/s13059-015-0683-4.

15.

Ruthenium-Caged Antisense Morpholinos for Regulating Gene Expression in Zebrafish Embryos.

Griepenburg JC, Rapp TL, Carroll PJ, Eberwine J, Dmochowski IJ.

Chem Sci. 2015 Apr 1;6(4):2342-2346.

16.

Identification of RNA cargoes by antibody-positioned RNA amplification.

Miyashiro KY, Eberwine J.

Cold Spring Harb Protoc. 2015 May 1;2015(5):434-41. doi: 10.1101/pdb.prot072447.

PMID:
25934929
17.

Single-neuron isolation for RNA analysis using pipette capture and laser capture microdissection.

Lovatt D, Bell T, Eberwine J.

Cold Spring Harb Protoc. 2015 Jan 5;2015(1):pdb.prot072439. doi: 10.1101/pdb.prot072439.

PMID:
25561613
18.

Antisense RNA amplification for target assessment of total mRNA from a single cell.

Morris J, Bell TJ, Buckley PT, Eberwine JH.

Cold Spring Harb Protoc. 2014 Nov 3;2014(11):1149-60. doi: 10.1101/pdb.prot072454.

PMID:
25368303
19.

An open-source toolbox for automated phenotyping of mice in behavioral tasks.

Patel TP, Gullotti DM, Hernandez P, O'Brien WT, Capehart BP, Morrison B 3rd, Bass C, Eberwine JE, Abel T, Meaney DF.

Front Behav Neurosci. 2014 Oct 8;8:349. doi: 10.3389/fnbeh.2014.00349. eCollection 2014.

20.

Divergence of RNA localization between rat and mouse neurons reveals the potential for rapid brain evolution.

Francis C, Natarajan S, Lee MT, Khaladkar M, Buckley PT, Sul JY, Eberwine J, Kim J.

BMC Genomics. 2014 Oct 9;15:883. doi: 10.1186/1471-2164-15-883.

21.

Single cell/cellular subregion-targeted phototransfection.

Lee J, Sul JY, Eberwine JH.

Cold Spring Harb Protoc. 2014 Sep 2;2014(9):935-9. doi: 10.1101/pdb.prot072421.

PMID:
25183811
22.

Identification of a circadian output circuit for rest:activity rhythms in Drosophila.

Cavanaugh DJ, Geratowski JD, Wooltorton JR, Spaethling JM, Hector CE, Zheng X, Johnson EC, Eberwine JH, Sehgal A.

Cell. 2014 Apr 24;157(3):689-701. doi: 10.1016/j.cell.2014.02.024.

23.

The promise of single-cell sequencing.

Eberwine J, Sul JY, Bartfai T, Kim J.

Nat Methods. 2014 Jan;11(1):25-7. No abstract available.

PMID:
24524134
24.

Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.

Lovatt D, Ruble BK, Lee J, Dueck H, Kim TK, Fisher S, Francis C, Spaethling JM, Wolf JA, Grady MS, Ulyanova AV, Yeldell SB, Griepenburg JC, Buckley PT, Kim J, Sul JY, Dmochowski IJ, Eberwine J.

Nat Methods. 2014 Feb;11(2):190-6. doi: 10.1038/nmeth.2804. Epub 2014 Jan 12.

25.

Serotonergic neuron regulation informed by in vivo single-cell transcriptomics.

Spaethling JM, Piel D, Dueck H, Buckley PT, Morris JF, Fisher SA, Lee J, Sul JY, Kim J, Bartfai T, Beck SG, Eberwine JH.

FASEB J. 2014 Feb;28(2):771-80. doi: 10.1096/fj.13-240267. Epub 2013 Nov 5.

26.

Cytoplasmic intron retention, function, splicing, and the sentinel RNA hypothesis.

Buckley PT, Khaladkar M, Kim J, Eberwine J.

Wiley Interdiscip Rev RNA. 2014 Mar-Apr;5(2):223-30. doi: 10.1002/wrna.1203. Epub 2013 Nov 4. Review.

27.

Subcellular RNA sequencing reveals broad presence of cytoplasmic intron-sequence retaining transcripts in mouse and rat neurons.

Khaladkar M, Buckley PT, Lee MT, Francis C, Eghbal MM, Chuong T, Suresh S, Kuhn B, Eberwine J, Kim J.

PLoS One. 2013 Oct 3;8(10):e76194. doi: 10.1371/journal.pone.0076194. eCollection 2013.

28.

Dendritic glutamate receptor mRNAs show contingent local hotspot-dependent translational dynamics.

Kim TK, Sul JY, Helmfors H, Langel U, Kim J, Eberwine J.

Cell Rep. 2013 Oct 17;5(1):114-25. doi: 10.1016/j.celrep.2013.08.029. Epub 2013 Sep 26.

29.

Single-cell transcriptomics for drug target discovery.

Spaethling JM, Eberwine JH.

Curr Opin Pharmacol. 2013 Oct;13(5):786-90. doi: 10.1016/j.coph.2013.04.011. Epub 2013 May 29. Review.

PMID:
23725882
30.

Elk-1 phosphorylated at threonine-417 is present in diverse cancers and correlates with differentiation grade of colonic adenocarcinoma.

Morris JF, Sul JY, Kim MS, Klein-Szanto AJ, Schochet T, Rustgi A, Eberwine JH.

Hum Pathol. 2013 May;44(5):766-76. doi: 10.1016/j.humpath.2012.08.001. Epub 2012 Oct 29.

31.

Quantitative biology of single neurons.

Eberwine J, Lovatt D, Buckley P, Dueck H, Francis C, Kim TK, Lee J, Lee M, Miyashiro K, Morris J, Peritz T, Schochet T, Spaethling J, Sul JY, Kim J.

J R Soc Interface. 2012 Dec 7;9(77):3165-83. doi: 10.1098/rsif.2012.0417. Epub 2012 Aug 22. Review.

32.

Perspectives on cell reprogramming with RNA.

Sul JY, Kim TK, Lee JH, Eberwine J.

Trends Biotechnol. 2012 May;30(5):243-9. doi: 10.1016/j.tibtech.2012.02.004. Epub 2012 Mar 27. Review.

33.

Drug targets: single-cell transcriptomics hastens unbiased discovery.

Bartfai T, Buckley PT, Eberwine J.

Trends Pharmacol Sci. 2012 Jan;33(1):9-16. doi: 10.1016/j.tips.2011.09.006. Epub 2011 Oct 25. Review.

34.

Transcriptome transfer provides a model for understanding the phenotype of cardiomyocytes.

Kim TK, Sul JY, Peternko NB, Lee JH, Lee M, Patel VV, Kim J, Eberwine JH.

Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):11918-23. doi: 10.1073/pnas.1101223108. Epub 2011 Jul 5.

35.

Transcriptome analysis of single cells.

Morris J, Singh JM, Eberwine JH.

J Vis Exp. 2011 Apr 25;(50). pii: 2634. doi: 10.3791/2634. Erratum in: J Vis Exp. 2011;57. doi: 10.3791/4082.

36.

Cytoplasmic intron sequence-retaining transcripts can be dendritically targeted via ID element retrotransposons.

Buckley PT, Lee MT, Sul JY, Miyashiro KY, Bell TJ, Fisher SA, Kim J, Eberwine J.

Neuron. 2011 Mar 10;69(5):877-84. doi: 10.1016/j.neuron.2011.02.028.

37.

Insulin-like growth factor 1-mediated hyperthermia involves anterior hypothalamic insulin receptors.

Sanchez-Alavez M, Osborn O, Tabarean IV, Holmberg KH, Eberwine J, Kahn CR, Bartfai T.

J Biol Chem. 2011 Apr 29;286(17):14983-90. doi: 10.1074/jbc.M110.188540. Epub 2011 Feb 17.

38.

mRNA for the EAAC1 subtype of glutamate transporter is present in neuronal dendrites in vitro and dramatically increases in vivo after a seizure.

Ross JR, Porter BE, Buckley PT, Eberwine JH, Robinson MB.

Neurochem Int. 2011 Feb;58(3):366-75. doi: 10.1016/j.neuint.2010.12.012. Epub 2010 Dec 24.

39.

Intron retention facilitates splice variant diversity in calcium-activated big potassium channel populations.

Bell TJ, Miyashiro KY, Sul JY, Buckley PT, Lee MT, McCullough R, Jochems J, Kim J, Cantor CR, Parsons TD, Eberwine JH.

Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):21152-7. doi: 10.1073/pnas.1015264107. Epub 2010 Nov 15.

40.

PAIR technology: exon-specific RNA-binding protein isolation in live cells.

Bell TJ, Eiríksdóttir E, Langel U, Eberwine J.

Methods Mol Biol. 2011;683:473-86. doi: 10.1007/978-1-60761-919-2_34.

PMID:
21053151
41.
42.

Towards A Fully Automated High-Throughput Phototransfection System.

Cappelleri DJ, Halasz A, Sul JY, Kim TK, Eberwine J, Kumar V.

JALA Charlottesv Va. 2010 Aug 1;15(4):329-341.

43.

Mammalian cell transfection: the present and the future.

Kim TK, Eberwine JH.

Anal Bioanal Chem. 2010 Aug;397(8):3173-8. doi: 10.1007/s00216-010-3821-6. Epub 2010 Jun 13. Review.

44.

RNA: state memory and mediator of cellular phenotype.

Kim J, Eberwine J.

Trends Cell Biol. 2010 Jun;20(6):311-8. doi: 10.1016/j.tcb.2010.03.003. Epub 2010 Apr 9.

45.

A neurotoxic phosphoform of Elk-1 associates with inclusions from multiple neurodegenerative diseases.

Sharma A, Callahan LM, Sul JY, Kim TK, Barrett L, Kim M, Powers JM, Federoff H, Eberwine J.

PLoS One. 2010 Feb 2;5(2):e9002. doi: 10.1371/journal.pone.0009002.

46.

Melanocyte-like cells in the heart and pulmonary veins contribute to atrial arrhythmia triggers.

Levin MD, Lu MM, Petrenko NB, Hawkins BJ, Gupta TH, Lang D, Buckley PT, Jochems J, Liu F, Spurney CF, Yuan LJ, Jacobson JT, Brown CB, Huang L, Beermann F, Margulies KB, Madesh M, Eberwine JH, Epstein JA, Patel VV.

J Clin Invest. 2009 Nov;119(11):3420-36. doi: 10.1172/JCI39109. Epub 2009 Oct 12.

47.

Insulin causes hyperthermia by direct inhibition of warm-sensitive neurons.

Sanchez-Alavez M, Tabarean IV, Osborn O, Mitsukawa K, Schaefer J, Dubins J, Holmberg KH, Klein I, Klaus J, Gomez LF, Kolb H, Secrest J, Jochems J, Myashiro K, Buckley P, Hadcock JR, Eberwine J, Conti B, Bartfai T.

Diabetes. 2010 Jan;59(1):43-50. doi: 10.2337/db09-1128. Epub 2009 Oct 21. Erratum in: Diabetes. 2010 Mar;59(3):756.

48.

Transcriptome transfer produces a predictable cellular phenotype.

Sul JY, Wu CW, Zeng F, Jochems J, Lee MT, Kim TK, Peritz T, Buckley P, Cappelleri DJ, Maronski M, Kim M, Kumar V, Meaney D, Kim J, Eberwine J.

Proc Natl Acad Sci U S A. 2009 May 5;106(18):7624-9. doi: 10.1073/pnas.0902161106. Epub 2009 Apr 20.

49.

Subcellular neuropharmacology: the importance of intracellular targeting.

Miyashiro KY, Bell TJ, Sul JY, Eberwine J.

Trends Pharmacol Sci. 2009 Apr;30(4):203-11. doi: 10.1016/j.tips.2009.01.005. Epub 2009 Mar 13. Review.

PMID:
19285735
50.

RNA analysis in neuronal dendrites: insights into Parkinson's disease.

Sharma A, Eberwine J.

Expert Rev Neurother. 2008 Dec;8(12):1775-7. doi: 10.1586/14737175.8.12.1775. No abstract available.

PMID:
19086872

Supplemental Content

Loading ...
Support Center