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Items: 1 to 50 of 419

1.

Attenuation of radiation toxicity by the phosphine resistance factor dihydrolipoamide dehydrogenase (DLD).

Alzahrani SM, Ebert PR.

Sci Rep. 2019 Apr 23;9(1):6455. doi: 10.1038/s41598-019-42678-w.

2.

Importance of point defect reactions for the atomic-scale roughness of III-V nanowire sidewalls.

Díaz Álvarez A, Peric N, Franchina Vergel NA, Nys JP, Berthe M, Patriarche G, Harmand JC, Caroff P, Plissard S, Ebert P, Xu T, Grandidier B.

Nanotechnology. 2019 Apr 17;30(32):324002. doi: 10.1088/1361-6528/ab1a4e. [Epub ahead of print]

PMID:
30995632
3.

Photodriven Dipole Reordering: Key to Carrier Separation in Metalorganic Halide Perovskites.

Hsu HC, Huang BC, Chin SC, Hsing CR, Nguyen DL, Schnedler M, Sankar R, Dunin-Borkowski RE, Wei CM, Chen CW, Ebert P, Chiu YP.

ACS Nano. 2019 Apr 23;13(4):4402-4409. doi: 10.1021/acsnano.8b09645. Epub 2019 Mar 27.

PMID:
30916538
4.

Composition modulation by twinning in InAsSb nanowires.

Schnedler M, Xu T, Portz V, Nys JP, Plissard SR, Berthe M, Eisele H, Dunin-Borkowski RE, Ebert P, Grandidier B.

Nanotechnology. 2018 Dec 19;30(32):324005. doi: 10.1088/1361-6528/aaf9ce. [Epub ahead of print]

PMID:
30566920
5.

Genome-wide RNAseq study of the molecular mechanisms underlying microglia activation in response to pathological tau perturbation in the rTg4510 tau transgenic animal model.

Wang H, Li Y, Ryder JW, Hole JT, Ebert PJ, Airey DC, Qian HR, Logsdon B, Fisher A, Ahmed Z, Murray TK, Cavallini A, Bose S, Eastwood BJ, Collier DA, Dage JL, Miller BB, Merchant KM, O'Neill MJ, Demattos RB.

Mol Neurodegener. 2018 Dec 17;13(1):65. doi: 10.1186/s13024-018-0296-y.

6.

Temporal enhancer profiling of parallel lineages identifies AHR and GLIS1 as regulators of mesenchymal multipotency.

Gérard D, Schmidt F, Ginolhac A, Schmitz M, Halder R, Ebert P, Schulz MH, Sauter T, Sinkkonen L.

Nucleic Acids Res. 2019 Feb 20;47(3):1141-1163. doi: 10.1093/nar/gky1240.

7.

Modeling Meets Metabolomics-The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism Caenorhabditis elegans.

Witting M, Hastings J, Rodriguez N, Joshi CJ, Hattwell JPN, Ebert PR, van Weeghel M, Gao AW, Wakelam MJO, Houtkooper RH, Mains A, Le Novère N, Sadykoff S, Schroeder F, Lewis NE, Schirra HJ, Kaleta C, Casanueva O.

Front Mol Biosci. 2018 Nov 14;5:96. doi: 10.3389/fmolb.2018.00096. eCollection 2018.

8.

Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters.

Behjati Ardakani F, Kattler K, Nordström K, Gasparoni N, Gasparoni G, Fuchs S, Sinha A, Barann M, Ebert P, Fischer J, Hutter B, Zipprich G, Imbusch CD, Felder B, Eils J, Brors B, Lengauer T, Manke T, Rosenstiel P, Walter J, Schulz MH.

Epigenetics Chromatin. 2018 Nov 10;11(1):66. doi: 10.1186/s13072-018-0236-7.

9.

Oxygen and Arsenite Synergize Phosphine Toxicity by Distinct Mechanisms.

Alzahrani SM, Ebert PR.

Toxicol Sci. 2019 Feb 1;167(2):419-425. doi: 10.1093/toxsci/kfy248.

PMID:
30304530
10.

TEPIC 2-an extended framework for transcription factor binding prediction and integrative epigenomic analysis.

Schmidt F, Kern F, Ebert P, Baumgarten N, Schulz MH.

Bioinformatics. 2019 May 1;35(9):1608-1609. doi: 10.1093/bioinformatics/bty856.

11.

A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains.

Salhab A, Nordström K, Gasparoni G, Kattler K, Ebert P, Ramirez F, Arrigoni L, Müller F, Polansky JK, Cadenas C, G Hengstler J, Lengauer T, Manke T; DEEP Consortium, Walter J.

Genome Biol. 2018 Sep 28;19(1):150. doi: 10.1186/s13059-018-1510-5.

12.

A high-throughput system used to determine frequency and distribution of phosphine resistance across large geographical regions.

Schlipalius DI, Tuck AG, Pavic H, Daglish GJ, Nayak MK, Ebert PR.

Pest Manag Sci. 2019 Apr;75(4):1091-1098. doi: 10.1002/ps.5221. Epub 2018 Nov 2.

PMID:
30255667
13.

Potential of Co-Fumigation with Phosphine (PH3) and Sulfuryl Fluoride (SO2F2) for the Management of Strongly Phosphine-Resistant Insect Pests of Stored Grain.

Jagadeesan R, Singarayan VT, Chandra K, Ebert PR, Nayak MK.

J Econ Entomol. 2018 Dec 14;111(6):2956-2965. doi: 10.1093/jee/toy269.

PMID:
30239852
14.

Abemaciclib Is Active in Preclinical Models of Ewing Sarcoma via Multipronged Regulation of Cell Cycle, DNA Methylation, and Interferon Pathway Signaling.

Dowless M, Lowery CD, Shackleford T, Renschler M, Stephens J, Flack R, Blosser W, Gupta S, Stewart J, Webster Y, Dempsey J, VanWye AB, Ebert P, Iversen P, Olsen JB, Gong X, Buchanan S, Houghton P, Stancato L.

Clin Cancer Res. 2018 Dec 1;24(23):6028-6039. doi: 10.1158/1078-0432.CCR-18-1256. Epub 2018 Aug 21.

PMID:
30131386
15.

Tuning Band Gap and Work Function Modulations in Monolayer hBN/Cu(111) Heterostructures with Moiré Patterns.

Zhang Q, Yu J, Ebert P, Zhang C, Pan CR, Chou MY, Shih CK, Zeng C, Yuan S.

ACS Nano. 2018 Sep 25;12(9):9355-9362. doi: 10.1021/acsnano.8b04444. Epub 2018 Aug 20.

PMID:
30107116
16.

Resistive switching in optoelectronic III-V materials based on deep traps.

Schnedler M, Portz V, Semmler U, Moors M, Waser R, Dunin-Borkowski RE, Ebert P.

Sci Rep. 2018 Jun 21;8(1):9483. doi: 10.1038/s41598-018-27835-x.

17.

5-Methoxyindole-2-carboxylic acid (MICA) suppresses Aβ-mediated pathology in C. elegans.

Ahmad W, Ebert PR.

Exp Gerontol. 2018 Jul 15;108:215-225. doi: 10.1016/j.exger.2018.04.021. Epub 2018 Apr 27.

PMID:
29709515
18.

Stress pre-conditioning with temperature, UV and gamma radiation induces tolerance against phosphine toxicity.

Alzahrani SM, Ebert PR.

PLoS One. 2018 Apr 19;13(4):e0195349. doi: 10.1371/journal.pone.0195349. eCollection 2018.

19.

Merestinib (LY2801653) inhibits neurotrophic receptor kinase (NTRK) and suppresses growth of NTRK fusion bearing tumors.

Konicek BW, Capen AR, Credille KM, Ebert PJ, Falcon BL, Heady GL, Patel BKR, Peek VL, Stephens JR, Stewart JA, Stout SL, Timm DE, Um SL, Willard MD, Wulur IH, Zeng Y, Wang Y, Walgren RA, Betty Yan SC.

Oncotarget. 2018 Feb 13;9(17):13796-13806. doi: 10.18632/oncotarget.24488. eCollection 2018 Mar 2.

20.

Variant Linkage Analysis Using de Novo Transcriptome Sequencing Identifies a Conserved Phosphine Resistance Gene in Insects.

Schlipalius DI, Tuck AG, Jagadeesan R, Nguyen T, Kaur R, Subramanian S, Barrero R, Nayak M, Ebert PR.

Genetics. 2018 May;209(1):281-290. doi: 10.1534/genetics.118.300688. Epub 2018 Mar 1.

21.
22.

Atomically Resolved Electronic States and Correlated Magnetic Order at Termination Engineered Complex Oxide Heterointerfaces.

Huang BC, Yu P, Chu YH, Chang CS, Ramesh R, Dunin-Borkowski RE, Ebert P, Chiu YP.

ACS Nano. 2018 Feb 27;12(2):1089-1095. doi: 10.1021/acsnano.7b06004. Epub 2018 Jan 31.

PMID:
29384356
23.

Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function.

Schröder C, Leitão E, Wallner S, Schmitz G, Klein-Hitpass L, Sinha A, Jöckel KH, Heilmann-Heimbach S, Hoffmann P, Nöthen MM, Steffens M, Ebert P, Rahmann S, Horsthemke B.

Epigenetics Chromatin. 2017 Jul 26;10(1):37. doi: 10.1186/s13072-017-0144-2.

24.

Effects of energy supplementation on energy losses and nitrogen balance of steers fed green-chopped wheat pasture I: Calorimetry.

Shreck AL, Ebert PJ, Bailey EA, Jennings JS, Casey KD, Meyer BE, Cole NA.

J Anim Sci. 2017 May;95(5):2133-2143. doi: 10.2527/jas.2017.1417.

PMID:
28727009
25.

Mouse PDX Trial Suggests Synergy of Concurrent Inhibition of RAF and EGFR in Colorectal Cancer with BRAF or KRAS Mutations.

Yao YM, Donoho GP, Iversen PW, Zhang Y, Van Horn RD, Forest A, Novosiadly RD, Webster YW, Ebert P, Bray S, Ting JC, Aggarwal A, Henry JR, Tiu RV, Plowman GD, Peng SB.

Clin Cancer Res. 2017 Sep 15;23(18):5547-5560. doi: 10.1158/1078-0432.CCR-16-3250. Epub 2017 Jun 13.

26.

Effect of condensed tannin extract supplementation on growth performance, nitrogen balance, gas emissions, and energetic losses of beef steers.

Ebert PJ, Bailey EA, Shreck AL, Jennings JS, Cole NA.

J Anim Sci. 2017 Mar;95(3):1345-1355. doi: 10.2527/jas.2016.0341.

PMID:
28380542
27.

Automated Wormscan.

Puckering T, Thompson J, Sathyamurthy S, Sukumar S, Shapira T, Ebert P.

Version 3. F1000Res. 2017 Feb 27 [revised 2019 Jan 1];6:192. doi: 10.12688/f1000research.10767.3. eCollection 2017.

28.

Brain-behavior relationships in source memory: Effects of age and memory ability.

Meusel LA, Grady CL, Ebert PE, Anderson ND.

Cortex. 2017 Jun;91:221-233. doi: 10.1016/j.cortex.2016.12.023. Epub 2017 Jan 12.

PMID:
28161030
29.

Ten Simple Rules for Developing Usable Software in Computational Biology.

List M, Ebert P, Albrecht F.

PLoS Comput Biol. 2017 Jan 5;13(1):e1005265. doi: 10.1371/journal.pcbi.1005265. eCollection 2017 Jan. No abstract available.

30.

Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction.

Schmidt F, Gasparoni N, Gasparoni G, Gianmoena K, Cadenas C, Polansky JK, Ebert P, Nordström K, Barann M, Sinha A, Fröhler S, Xiong J, Dehghani Amirabad A, Behjati Ardakani F, Hutter B, Zipprich G, Felder B, Eils J, Brors B, Chen W, Hengstler JG, Hamann A, Lengauer T, Rosenstiel P, Walter J, Schulz MH.

Nucleic Acids Res. 2017 Jan 9;45(1):54-66. doi: 10.1093/nar/gkw1061. Epub 2016 Nov 29.

31.

DNA Methylation Dynamics of Human Hematopoietic Stem Cell Differentiation.

Farlik M, Halbritter F, Müller F, Choudry FA, Ebert P, Klughammer J, Farrow S, Santoro A, Ciaurro V, Mathur A, Uppal R, Stunnenberg HG, Ouwehand WH, Laurenti E, Lengauer T, Frontini M, Bock C.

Cell Stem Cell. 2016 Dec 1;19(6):808-822. doi: 10.1016/j.stem.2016.10.019. Epub 2016 Nov 17.

32.

Epigenomic Profiling of Human CD4+ T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development.

Durek P, Nordström K, Gasparoni G, Salhab A, Kressler C, de Almeida M, Bassler K, Ulas T, Schmidt F, Xiong J, Glažar P, Klironomos F, Sinha A, Kinkley S, Yang X, Arrigoni L, Amirabad AD, Ardakani FB, Feuerbach L, Gorka O, Ebert P, Müller F, Li N, Frischbutter S, Schlickeiser S, Cendon C, Fröhler S, Felder B, Gasparoni N, Imbusch CD, Hutter B, Zipprich G, Tauchmann Y, Reinke S, Wassilew G, Hoffmann U, Richter AS, Sieverling L; DEEP Consortium, Chang HD, Syrbe U, Kalus U, Eils J, Brors B, Manke T, Ruland J, Lengauer T, Rajewsky N, Chen W, Dong J, Sawitzki B, Chung HR, Rosenstiel P, Schulz MH, Schultze JL, Radbruch A, Walter J, Hamann A, Polansky JK.

Immunity. 2016 Nov 15;45(5):1148-1161. doi: 10.1016/j.immuni.2016.10.022.

33.

Metformin Attenuates Aβ Pathology Mediated Through Levamisole Sensitive Nicotinic Acetylcholine Receptors in a C. elegans Model of Alzheimer's Disease.

Ahmad W, Ebert PR.

Mol Neurobiol. 2017 Sep;54(7):5427-5439. doi: 10.1007/s12035-016-0085-y. Epub 2016 Sep 5.

PMID:
27596506
34.

Epigenetic dynamics of monocyte-to-macrophage differentiation.

Wallner S, Schröder C, Leitão E, Berulava T, Haak C, Beißer D, Rahmann S, Richter AS, Manke T, Bönisch U, Arrigoni L, Fröhler S, Klironomos F, Chen W, Rajewsky N, Müller F, Ebert P, Lengauer T, Barann M, Rosenstiel P, Gasparoni G, Nordström K, Walter J, Brors B, Zipprich G, Felder B, Klein-Hitpass L, Attenberger C, Schmitz G, Horsthemke B.

Epigenetics Chromatin. 2016 Jul 29;9:33. doi: 10.1186/s13072-016-0079-z. eCollection 2016.

35.

MAP Kinase Inhibition Promotes T Cell and Anti-tumor Activity in Combination with PD-L1 Checkpoint Blockade.

Ebert PJR, Cheung J, Yang Y, McNamara E, Hong R, Moskalenko M, Gould SE, Maecker H, Irving BA, Kim JM, Belvin M, Mellman I.

Immunity. 2016 Mar 15;44(3):609-621. doi: 10.1016/j.immuni.2016.01.024. Epub 2016 Mar 2.

36.

Genetic characterization of field-evolved resistance to phosphine in the rusty grain beetle, Cryptolestes ferrugineus (Laemophloeidae: Coleoptera).

Jagadeesan R, Collins PJ, Nayak MK, Schlipalius DI, Ebert PR.

Pestic Biochem Physiol. 2016 Feb;127:67-75. doi: 10.1016/j.pestbp.2015.09.008. Epub 2015 Sep 25.

PMID:
26821660
37.

Genetic Conservation of Phosphine Resistance in the Rice Weevil Sitophilus oryzae (L.).

Nguyen TT, Collins PJ, Duong TM, Schlipalius DI, Ebert PR.

J Hered. 2016 May;107(3):228-37. doi: 10.1093/jhered/esw001. Epub 2016 Jan 16.

38.

Nonstoichiometric Low-Temperature Grown GaAs Nanowires.

Díaz Álvarez A, Xu T, Tütüncüoglu G, Demonchaux T, Nys JP, Berthe M, Matteini F, Potts HA, Troadec D, Patriarche G, Lampin JF, Coinon C, Fontcuberta i Morral A, Dunin-Borkowski RE, Ebert P, Grandidier B.

Nano Lett. 2015 Oct 14;15(10):6440-5. doi: 10.1021/acs.nanolett.5b01802. Epub 2015 Sep 9.

PMID:
26339987
39.

A general concept for consistent documentation of computational analyses.

Ebert P, Müller F, Nordström K, Lengauer T, Schulz MH.

Database (Oxford). 2015 Jun 8;2015:bav050. doi: 10.1093/database/bav050. Print 2015.

40.

Clonal Deletion Prunes but Does Not Eliminate Self-Specific αβ CD8(+) T Lymphocytes.

Yu W, Jiang N, Ebert PJ, Kidd BA, Müller S, Lund PJ, Juang J, Adachi K, Tse T, Birnbaum ME, Newell EW, Wilson DM, Grotenbreg GM, Valitutti S, Quake SR, Davis MM.

Immunity. 2015 May 19;42(5):929-41. doi: 10.1016/j.immuni.2015.05.001.

41.

Inheritance and characterization of strong resistance to phosphine in Sitophilus oryzae (L.).

Nguyen TT, Collins PJ, Ebert PR.

PLoS One. 2015 Apr 17;10(4):e0124335. doi: 10.1371/journal.pone.0124335. eCollection 2015.

42.

Phosphine resistance in India is characterised by a dihydrolipoamide dehydrogenase variant that is otherwise unobserved in eukaryotes.

Kaur R, Subbarayalu M, Jagadeesan R, Daglish GJ, Nayak MK, Naik HR, Ramasamy S, Subramanian C, Ebert PR, Schlipalius DI.

Heredity (Edinb). 2015 Sep;115(3):188-94. doi: 10.1038/hdy.2015.24. Epub 2015 Apr 8.

43.

Improving reference epigenome catalogs by computational prediction.

Ebert P, Bock C.

Nat Biotechnol. 2015 Apr;33(4):354-5. doi: 10.1038/nbt.3194. No abstract available.

PMID:
25850057
44.

Whole-genome sequencing of asian lung cancers: second-hand smoke unlikely to be responsible for higher incidence of lung cancer among Asian never-smokers.

Krishnan VG, Ebert PJ, Ting JC, Lim E, Wong SS, Teo AS, Yue YG, Chua HH, Ma X, Loh GS, Lin Y, Tan JH, Yu K, Zhang S, Reinhard C, Tan DS, Peters BA, Lincoln SE, Ballinger DG, Laramie JM, Nilsen GB, Barber TD, Tan P, Hillmer AM, Ng PC.

Cancer Res. 2014 Nov 1;74(21):6071-81. doi: 10.1158/0008-5472.CAN-13-3195. Epub 2014 Sep 4.

45.

Gain and loss of function of P2X7 receptors: mechanisms, pharmacology and relevance to diabetic neuropathic pain.

Ursu D, Ebert P, Langron E, Ruble C, Munsie L, Zou W, Fijal B, Qian YW, McNearney TA, Mogg A, Grubisha O, Merchant K, Sher E.

Mol Pain. 2014 Jun 16;10:37. doi: 10.1186/1744-8069-10-37.

46.

BiQ Analyzer HiMod: an interactive software tool for high-throughput locus-specific analysis of 5-methylcytosine and its oxidized derivatives.

Becker D, Lutsik P, Ebert P, Bock C, Lengauer T, Walter J.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W501-7. doi: 10.1093/nar/gku457. Epub 2014 May 29.

47.

Enrichment with wood blocks does not affect toxicity assessment in an exploratory toxicology model using Sprague-Dawley rats.

Ditewig AC, Bratcher NA, Davila DR, Dayton BD, Ebert P, Lesuisse P, Liguori MJ, Wetter JM, Yang H, Buck WR.

J Am Assoc Lab Anim Sci. 2014 May;53(3):246-60.

48.

Paenibacillus lentus sp. nov., a β-mannanolytic bacterium isolated from mixed soil samples in a selective enrichment using guar gum as the sole carbon source.

Li YF, Calley JN, Ebert PJ, Helmes EB.

Int J Syst Evol Microbiol. 2014 Apr;64(Pt 4):1166-72. doi: 10.1099/ijs.0.054726-0. Epub 2014 Jan 9.

PMID:
24408531
49.

Modulation of behavioral networks by selective interneuronal inactivation.

Schmidt MJ, Horvath S, Ebert P, Norris JL, Seeley EH, Brown J, Gellert L, Everheart M, Garbett KA, Grice TW, Caprioli RM, Mirnics K.

Mol Psychiatry. 2014 May;19(5):580-7. doi: 10.1038/mp.2013.167. Epub 2013 Dec 10.

50.

The role of cannabinoid 1 receptor expressing interneurons in behavior.

Brown JA, Horváth S, Garbett KA, Schmidt MJ, Everheart M, Gellért L, Ebert P, Mirnics K.

Neurobiol Dis. 2014 Mar;63:210-21. doi: 10.1016/j.nbd.2013.11.001. Epub 2013 Nov 13.

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