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Items: 1 to 50 of 85

1.

Comparative analysis of deep sequenced methanogenic communities: identification of microorganisms responsible for methane production.

Pyzik A, Ciezkowska M, Krawczyk PS, Sobczak A, Drewniak L, Dziembowski A, Lipinski L.

Microb Cell Fact. 2018 Dec 20;17(1):197. doi: 10.1186/s12934-018-1043-3.

2.

Controlling the mitochondrial antisense - role of the SUV3-PNPase complex and its co-factor GRSF1 in mitochondrial RNA surveillance.

Pietras Z, Wojcik MA, Borowski LS, Szewczyk M, Kulinski TM, Cysewski D, Stepien PP, Dziembowski A, Szczesny RJ.

Mol Cell Oncol. 2018 Sep 20;5(6):e1516452. doi: 10.1080/23723556.2018.1516452. eCollection 2018.

PMID:
30525095
3.

Terminal nucleotidyl transferases (TENTs) in mammalian RNA metabolism.

Warkocki Z, Liudkovska V, Gewartowska O, Mroczek S, Dziembowski A.

Philos Trans R Soc Lond B Biol Sci. 2018 Nov 5;373(1762). pii: 20180162. doi: 10.1098/rstb.2018.0162. Review.

4.

5' and 3' modifications controlling RNA degradation: from safeguards to executioners.

Gagliardi D, Dziembowski A.

Philos Trans R Soc Lond B Biol Sci. 2018 Nov 5;373(1762). pii: 20180160. doi: 10.1098/rstb.2018.0160.

5.

Sphingopyxis lindanitolerans sp. nov. strain WS5A3pT enriched from a pesticide disposal site.

Kaminski MA, Sobczak A, Spolnik G, Danikiewicz W, Dziembowski A, Lipinski L.

Int J Syst Evol Microbiol. 2018 Dec;68(12):3935-3941. doi: 10.1099/ijsem.0.003094. Epub 2018 Nov 5.

PMID:
30394866
6.

Elimination of 01/A'-A0 pre-rRNA processing by-product in human cells involves cooperative action of two nuclear exosome-associated nucleases: RRP6 and DIS3.

Kobyłecki K, Drążkowska K, Kuliński TM, Dziembowski A, Tomecki R.

RNA. 2018 Dec;24(12):1677-1692. doi: 10.1261/rna.066589.118. Epub 2018 Sep 28.

PMID:
30266864
7.

Genomic and Functional Characterization of Environmental Strains of SDS-Degrading Pseudomonas spp., Providing a Source of New Sulfatases.

Furmanczyk EM, Lipinski L, Dziembowski A, Sobczak A.

Front Microbiol. 2018 Aug 17;9:1795. doi: 10.3389/fmicb.2018.01795. eCollection 2018.

8.

Uridylation by TUT4/7 Restricts Retrotransposition of Human LINE-1s.

Warkocki Z, Krawczyk PS, Adamska D, Bijata K, Garcia-Perez JL, Dziembowski A.

Cell. 2018 Sep 6;174(6):1537-1548.e29. doi: 10.1016/j.cell.2018.07.022. Epub 2018 Aug 16.

9.

Mitochondrial double-stranded RNA triggers antiviral signalling in humans.

Dhir A, Dhir S, Borowski LS, Jimenez L, Teitell M, Rötig A, Crow YJ, Rice GI, Duffy D, Tamby C, Nojima T, Munnich A, Schiff M, de Almeida CR, Rehwinkel J, Dziembowski A, Szczesny RJ, Proudfoot NJ.

Nature. 2018 Aug;560(7717):238-242. doi: 10.1038/s41586-018-0363-0. Epub 2018 Jul 25.

PMID:
30046113
10.

Dedicated surveillance mechanism controls G-quadruplex forming non-coding RNAs in human mitochondria.

Pietras Z, Wojcik MA, Borowski LS, Szewczyk M, Kulinski TM, Cysewski D, Stepien PP, Dziembowski A, Szczesny RJ.

Nat Commun. 2018 Jul 2;9(1):2558. doi: 10.1038/s41467-018-05007-9.

11.

Intrinsically disordered N-terminal domain of the Helicoverpa armigera Ultraspiracle stabilizes the dimeric form via a scorpion-like structure.

Wycisk K, Tarczewska A, Kaus-Drobek M, Dadlez M, Hołubowicz R, Pietras Z, Dziembowski A, Taube M, Kozak M, Orłowski M, Ożyhar A.

J Steroid Biochem Mol Biol. 2018 Oct;183:167-183. doi: 10.1016/j.jsbmb.2018.06.011. Epub 2018 Jun 23.

12.

Pseudomonas laurylsulfatovorans sp. nov., sodium dodecyl sulfate degrading bacteria, isolated from the peaty soil of a wastewater treatment plant.

Furmanczyk EM, Kaminski MA, Lipinski L, Dziembowski A, Sobczak A.

Syst Appl Microbiol. 2018 Jul;41(4):348-354. doi: 10.1016/j.syapm.2018.03.009. Epub 2018 Apr 11.

PMID:
29752019
13.

Versatile approach for functional analysis of human proteins and efficient stable cell line generation using FLP-mediated recombination system.

Szczesny RJ, Kowalska K, Klosowska-Kosicka K, Chlebowski A, Owczarek EP, Warkocki Z, Kulinski TM, Adamska D, Affek K, Jedroszkowiak A, Kotrys AV, Tomecki R, Krawczyk PS, Borowski LS, Dziembowski A.

PLoS One. 2018 Mar 28;13(3):e0194887. doi: 10.1371/journal.pone.0194887. eCollection 2018.

14.

Dominant ELOVL1 mutation causes neurological disorder with ichthyotic keratoderma, spasticity, hypomyelination and dysmorphic features.

Kutkowska-Kaźmierczak A, Rydzanicz M, Chlebowski A, Kłosowska-Kosicka K, Mika A, Gruchota J, Jurkiewicz E, Kowalewski C, Pollak A, Stradomska TJ, Kmieć T, Jakubowski R, Gasperowicz P, Walczak A, Śladowski D, Jankowska-Steifer E, Korniszewski L, Kosińska J, Obersztyn E, Nowak W, Śledziński T, Dziembowski A, Płoski R.

J Med Genet. 2018 Jun;55(6):408-414. doi: 10.1136/jmedgenet-2017-105172. Epub 2018 Mar 1.

PMID:
29496980
15.

PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures.

Krawczyk PS, Lipinski L, Dziembowski A.

Nucleic Acids Res. 2018 Apr 6;46(6):e35. doi: 10.1093/nar/gkx1321.

16.

Structural analysis of mtEXO mitochondrial RNA degradosome reveals tight coupling of nuclease and helicase components.

Razew M, Warkocki Z, Taube M, Kolondra A, Czarnocki-Cieciura M, Nowak E, Labedzka-Dmoch K, Kawinska A, Piatkowski J, Golik P, Kozak M, Dziembowski A, Nowotny M.

Nat Commun. 2018 Jan 8;9(1):97. doi: 10.1038/s41467-017-02570-5.

17.

Isolation and Characterization of Pseudomonas spp. Strains That Efficiently Decompose Sodium Dodecyl Sulfate.

Furmanczyk EM, Kaminski MA, Spolnik G, Sojka M, Danikiewicz W, Dziembowski A, Lipinski L, Sobczak A.

Front Microbiol. 2017 Nov 7;8:1872. doi: 10.3389/fmicb.2017.01872. eCollection 2017.

18.

Pseudomonas silesiensis sp. nov. strain A3T isolated from a biological pesticide sewage treatment plant and analysis of the complete genome sequence.

Kaminski MA, Furmanczyk EM, Sobczak A, Dziembowski A, Lipinski L.

Syst Appl Microbiol. 2018 Jan;41(1):13-22. doi: 10.1016/j.syapm.2017.09.002. Epub 2017 Nov 3.

PMID:
29153257
19.

DNA Ligase C and Prim-PolC participate in base excision repair in mycobacteria.

Płociński P, Brissett NC, Bianchi J, Brzostek A, Korycka-Machała M, Dziembowski A, Dziadek J, Doherty AJ.

Nat Commun. 2017 Nov 1;8(1):1251. doi: 10.1038/s41467-017-01365-y.

20.

Draft Genome Sequence of the Type Strain Pseudomonas umsongensis DSM 16611.

Furmanczyk EM, Kaminski MA, Dziembowski A, Lipinski L, Sobczak A.

Genome Announc. 2017 Sep 28;5(39). pii: e01038-17. doi: 10.1128/genomeA.01038-17.

21.

Draft Genome Sequence of the Type Strain Pseudomonas jessenii DSM 17150.

Furmanczyk EM, Kaminski MA, Dziembowski A, Lipinski L, Sobczak A.

Genome Announc. 2017 Sep 28;5(39). pii: e01035-17. doi: 10.1128/genomeA.01035-17.

22.
23.

The non-canonical poly(A) polymerase FAM46C acts as an onco-suppressor in multiple myeloma.

Mroczek S, Chlebowska J, Kuliński TM, Gewartowska O, Gruchota J, Cysewski D, Liudkovska V, Borsuk E, Nowis D, Dziembowski A.

Nat Commun. 2017 Sep 20;8(1):619. doi: 10.1038/s41467-017-00578-5.

24.

Draft Genome Sequence of the Type Strain Sphingopyxis bauzanensis DSM 22271.

Kaminski MA, Furmanczyk EM, Dziembowski A, Sobczak A, Lipinski L.

Genome Announc. 2017 Sep 14;5(37). pii: e01014-17. doi: 10.1128/genomeA.01014-17.

25.

Draft Genome Sequence of the Type Strain Sphingopyxis witflariensis DSM 14551.

Kaminski MA, Furmanczyk EM, Dziembowski A, Sobczak A, Lipinski L.

Genome Announc. 2017 Sep 7;5(36). pii: e00924-17. doi: 10.1128/genomeA.00924-17.

26.

Two novel C-terminal frameshift mutations in the β-globin gene lead to rapid mRNA decay.

Rawa K, Szczesny RJ, Owczarek EP, Adamowicz-Salach A, Klukowska A, Demkow U, Plochocka D, Szczesny P, Gora M, Dziembowski A, Burzynska B.

BMC Med Genet. 2017 Jun 8;18(1):65. doi: 10.1186/s12881-017-0428-1.

27.

A short splicing isoform of HBS1L links the cytoplasmic exosome and SKI complexes in humans.

Kalisiak K, Kuliński TM, Tomecki R, Cysewski D, Pietras Z, Chlebowski A, Kowalska K, Dziembowski A.

Nucleic Acids Res. 2017 Feb 28;45(4):2068-2080. doi: 10.1093/nar/gkw862.

28.

Nucleoplasmin-like domain of FKBP39 from Drosophila melanogaster forms a tetramer with partly disordered tentacle-like C-terminal segments.

Kozłowska M, Tarczewska A, Jakób M, Bystranowska D, Taube M, Kozak M, Czarnocki-Cieciura M, Dziembowski A, Orłowski M, Tkocz K, Ożyhar A.

Sci Rep. 2017 Jan 11;7:40405. doi: 10.1038/srep40405.

29.

Cytoplasmic RNA decay pathways - Enzymes and mechanisms.

Łabno A, Tomecki R, Dziembowski A.

Biochim Biophys Acta. 2016 Dec;1863(12):3125-3147. doi: 10.1016/j.bbamcr.2016.09.023. Epub 2016 Oct 3. Review.

30.

Beyond the known functions of the CCR4-NOT complex in gene expression regulatory mechanisms: New structural insights to unravel CCR4-NOT mRNA processing machinery.

Ukleja M, Valpuesta JM, Dziembowski A, Cuellar J.

Bioessays. 2016 Oct;38(10):1048-58. doi: 10.1002/bies.201600092. Epub 2016 Aug 9. Review.

PMID:
27502453
31.

Perlman syndrome nuclease DIS3L2 controls cytoplasmic non-coding RNAs and provides surveillance pathway for maturing snRNAs.

Łabno A, Warkocki Z, Kuliński T, Krawczyk PS, Bijata K, Tomecki R, Dziembowski A.

Nucleic Acids Res. 2016 Dec 1;44(21):10437-10453. Epub 2016 Jul 18.

32.

Filaggrin inhibits generation of CD1a neolipid antigens by house dust mite-derived phospholipase.

Jarrett R, Salio M, Lloyd-Lavery A, Subramaniam S, Bourgeois E, Archer C, Cheung KL, Hardman C, Chandler D, Salimi M, Gutowska-Owsiak D, de la Serna JB, Fallon PG, Jolin H, Mckenzie A, Dziembowski A, Podobas EI, Bal W, Johnson D, Moody DB, Cerundolo V, Ogg G.

Sci Transl Med. 2016 Feb 10;8(325):325ra18. doi: 10.1126/scitranslmed.aad6833.

33.

The architecture of the Schizosaccharomyces pombe CCR4-NOT complex.

Ukleja M, Cuellar J, Siwaszek A, Kasprzak JM, Czarnocki-Cieciura M, Bujnicki JM, Dziembowski A, Valpuesta JM.

Nat Commun. 2016 Jan 25;7:10433. doi: 10.1038/ncomms10433.

34.

DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts.

Szczepińska T, Kalisiak K, Tomecki R, Labno A, Borowski LS, Kulinski TM, Adamska D, Kosinska J, Dziembowski A.

Genome Res. 2015 Nov;25(11):1622-33. doi: 10.1101/gr.189597.115. Epub 2015 Aug 20.

35.

Mistargeted mitochondrial proteins activate a proteostatic response in the cytosol.

Wrobel L, Topf U, Bragoszewski P, Wiese S, Sztolsztener ME, Oeljeklaus S, Varabyova A, Lirski M, Chroscicki P, Mroczek S, Januszewicz E, Dziembowski A, Koblowska M, Warscheid B, Chacinska A.

Nature. 2015 Aug 27;524(7566):485-8. doi: 10.1038/nature14951. Epub 2015 Aug 5.

PMID:
26245374
36.

hUTP24 is essential for processing of the human rRNA precursor at site A1, but not at site A0.

Tomecki R, Labno A, Drazkowska K, Cysewski D, Dziembowski A.

RNA Biol. 2015;12(9):1010-29. doi: 10.1080/15476286.2015.1073437.

37.

Characterization of the mycobacterial acyl-CoA carboxylase holo complexes reveals their functional expansion into amino acid catabolism.

Ehebauer MT, Zimmermann M, Jakobi AJ, Noens EE, Laubitz D, Cichocki B, Marrakchi H, Lanéelle MA, Daffé M, Sachse C, Dziembowski A, Sauer U, Wilmanns M.

PLoS Pathog. 2015 Feb 19;11(2):e1004623. doi: 10.1371/journal.ppat.1004623. eCollection 2015 Feb.

38.

Rbs1, a new protein implicated in RNA polymerase III biogenesis in yeast Saccharomyces cerevisiae.

Cieśla M, Makała E, Płonka M, Bazan R, Gewartowski K, Dziembowski A, Boguta M.

Mol Cell Biol. 2015 Apr;35(7):1169-81. doi: 10.1128/MCB.01230-14. Epub 2015 Jan 20.

39.

Purification of eukaryotic exoribonucleases following heterologous expression in bacteria and analysis of their biochemical properties by in vitro enzymatic assays.

Tomecki R, Drazkowska K, Krawczyk A, Kowalska K, Dziembowski A.

Methods Mol Biol. 2015;1259:417-52. doi: 10.1007/978-1-4939-2214-7_25.

PMID:
25579600
40.

The human nuclear exosome targeting complex is loaded onto newly synthesized RNA to direct early ribonucleolysis.

Lubas M, Andersen PR, Schein A, Dziembowski A, Kudla G, Jensen TH.

Cell Rep. 2015 Jan 13;10(2):178-92. doi: 10.1016/j.celrep.2014.12.026. Epub 2015 Jan 8.

41.

Proteins involved in the degradation of cytoplasmic mRNA in the major eukaryotic model systems.

Siwaszek A, Ukleja M, Dziembowski A.

RNA Biol. 2014;11(9):1122-36. doi: 10.4161/rna.34406. Review.

42.

Linear mtDNA fragments and unusual mtDNA rearrangements associated with pathological deficiency of MGME1 exonuclease.

Nicholls TJ, Zsurka G, Peeva V, Schöler S, Szczesny RJ, Cysewski D, Reyes A, Kornblum C, Sciacco M, Moggio M, Dziembowski A, Kunz WS, Minczuk M.

Hum Mol Genet. 2014 Dec 1;23(23):6147-62. doi: 10.1093/hmg/ddu336. Epub 2014 Jun 30.

43.

Structural and biochemical insights to the role of the CCR4-NOT complex and DDX6 ATPase in microRNA repression.

Mathys H, Basquin J, Ozgur S, Czarnocki-Cieciura M, Bonneau F, Aartse A, Dziembowski A, Nowotny M, Conti E, Filipowicz W.

Mol Cell. 2014 Jun 5;54(5):751-65. doi: 10.1016/j.molcel.2014.03.036. Epub 2014 Apr 24.

44.

Identification of protein partners in mycobacteria using a single-step affinity purification method.

Płociński P, Laubitz D, Cysewski D, Stoduś K, Kowalska K, Dziembowski A.

PLoS One. 2014 Mar 24;9(3):e91380. doi: 10.1371/journal.pone.0091380. eCollection 2014.

45.

Probabilistic approach to predicting substrate specificity of methyltransferases.

Szczepińska T, Kutner J, Kopczyński M, Pawłowski K, Dziembowski A, Kudlicki A, Ginalski K, Rowicka M.

PLoS Comput Biol. 2014 Mar 20;10(3):e1003514. doi: 10.1371/journal.pcbi.1003514. eCollection 2014 Mar.

46.

Multiple myeloma-associated hDIS3 mutations cause perturbations in cellular RNA metabolism and suggest hDIS3 PIN domain as a potential drug target.

Tomecki R, Drazkowska K, Kucinski I, Stodus K, Szczesny RJ, Gruchota J, Owczarek EP, Kalisiak K, Dziembowski A.

Nucleic Acids Res. 2014 Jan;42(2):1270-90. doi: 10.1093/nar/gkt930. Epub 2013 Oct 22.

47.

A new strategy for gene targeting and functional proteomics using the DT40 cell line.

Orlowska KP, Klosowska K, Szczesny RJ, Cysewski D, Krawczyk PS, Dziembowski A.

Nucleic Acids Res. 2013 Sep;41(17):e167. doi: 10.1093/nar/gkt650. Epub 2013 Jul 27.

48.

U6 RNA biogenesis and disease association.

Mroczek S, Dziembowski A.

Wiley Interdiscip Rev RNA. 2013 Sep-Oct;4(5):581-92. doi: 10.1002/wrna.1181. Epub 2013 Jun 14. Review.

PMID:
23776162
49.

Exonuclease hDIS3L2 specifies an exosome-independent 3'-5' degradation pathway of human cytoplasmic mRNA.

Lubas M, Damgaard CK, Tomecki R, Cysewski D, Jensen TH, Dziembowski A.

EMBO J. 2013 Jul 3;32(13):1855-68. doi: 10.1038/emboj.2013.135. Epub 2013 Jun 11.

50.

The RNA exosome complex central channel controls both exonuclease and endonuclease Dis3 activities in vivo and in vitro.

Drazkowska K, Tomecki R, Stodus K, Kowalska K, Czarnocki-Cieciura M, Dziembowski A.

Nucleic Acids Res. 2013 Apr 1;41(6):3845-58. doi: 10.1093/nar/gkt060. Epub 2013 Feb 12.

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