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Items: 19

1.

Extensive sequencing of seven human genomes to characterize benchmark reference materials.

Zook JM, Catoe D, McDaniel J, Vang L, Spies N, Sidow A, Weng Z, Liu Y, Mason CE, Alexander N, Henaff E, McIntyre AB, Chandramohan D, Chen F, Jaeger E, Moshrefi A, Pham K, Stedman W, Liang T, Saghbini M, Dzakula Z, Hastie A, Cao H, Deikus G, Schadt E, Sebra R, Bashir A, Truty RM, Chang CC, Gulbahce N, Zhao K, Ghosh S, Hyland F, Fu Y, Chaisson M, Xiao C, Trow J, Sherry ST, Zaranek AW, Ball M, Bobe J, Estep P, Church GM, Marks P, Kyriazopoulou-Panagiotopoulou S, Zheng GX, Schnall-Levin M, Ordonez HS, Mudivarti PA, Giorda K, Sheng Y, Rypdal KB, Salit M.

Sci Data. 2016 Jun 7;3:160025. doi: 10.1038/sdata.2016.25.

2.

A hybrid approach for de novo human genome sequence assembly and phasing.

Mostovoy Y, Levy-Sakin M, Lam J, Lam ET, Hastie AR, Marks P, Lee J, Chu C, Lin C, Džakula Ž, Cao H, Schlebusch SA, Giorda K, Schnall-Levin M, Wall JD, Kwok PY.

Nat Methods. 2016 Jul;13(7):587-90. doi: 10.1038/nmeth.3865. Epub 2016 May 9.

3.

Whole-genome mutational burden analysis of three pluripotency induction methods.

Bhutani K, Nazor KL, Williams R, Tran H, Dai H, Džakula Ž, Cho EH, Pang AWC, Rao M, Cao H, Schork NJ, Loring JF.

Nat Commun. 2016 Feb 19;7:10536. doi: 10.1038/ncomms10536.

4.

Genome-Wide Structural Variation Detection by Genome Mapping on Nanochannel Arrays.

Mak AC, Lai YY, Lam ET, Kwok TP, Leung AK, Poon A, Mostovoy Y, Hastie AR, Stedman W, Anantharaman T, Andrews W, Zhou X, Pang AW, Dai H, Chu C, Lin C, Wu JJ, Li CM, Li JW, Yim AK, Chan S, Sibert J, Džakula Ž, Cao H, Yiu SM, Chan TF, Yip KY, Xiao M, Kwok PY.

Genetics. 2016 Jan;202(1):351-62. doi: 10.1534/genetics.115.183483. Epub 2015 Oct 28.

5.

Noninvasive prenatal detection of sex chromosomal aneuploidies by sequencing circulating cell-free DNA from maternal plasma.

Mazloom AR, Džakula Ž, Oeth P, Wang H, Jensen T, Tynan J, McCullough R, Saldivar JS, Ehrich M, van den Boom D, Bombard AT, Maeder M, McLennan G, Meschino W, Palomaki GE, Canick JA, Deciu C.

Prenat Diagn. 2013 Jun;33(6):591-7. doi: 10.1002/pd.4127.

PMID:
23592550
6.

High-throughput massively parallel sequencing for fetal aneuploidy detection from maternal plasma.

Jensen TJ, Zwiefelhofer T, Tim RC, Džakula Ž, Kim SK, Mazloom AR, Zhu Z, Tynan J, Lu T, McLennan G, Palomaki GE, Canick JA, Oeth P, Deciu C, van den Boom D, Ehrich M.

PLoS One. 2013;8(3):e57381. doi: 10.1371/journal.pone.0057381. Epub 2013 Mar 6.

7.

Detection of microdeletion 22q11.2 in a fetus by next-generation sequencing of maternal plasma.

Jensen TJ, Dzakula Z, Deciu C, van den Boom D, Ehrich M.

Clin Chem. 2012 Jul;58(7):1148-51. doi: 10.1373/clinchem.2011.180794. Epub 2012 May 4.

8.

Mechanisms of immediate temperature compensation: experiments with brain synaptosomes from rat and ground squirrel.

Marjanović M, Zivadinović D, Dzakula Z, Andjus RK.

Ann N Y Acad Sci. 2005 Jun;1048:47-59.

PMID:
16154920
9.

Equilibrium of nucleotides in the dogfish brain.

Andjus RK, Dzakula Z, Marjanović M.

Ann N Y Acad Sci. 2005 Jun;1048:36-46.

PMID:
16154919
10.

Brain energetics and tolerance to anoxia in deep hypothermia.

Andjus RK, Dzakula Z, Markley JL, Macura S.

Ann N Y Acad Sci. 2005 Jun;1048:10-35.

PMID:
16154918
11.

Kinetic properties of the enzyme-substrate system: a basis for immediate temperature compensation.

Andjus RK, Dzakula Z, Marjanović M, Zivadinović D.

J Theor Biol. 2002 Jul 7;217(1):33-46.

PMID:
12183128
12.

Phase angle measurement from peak areas (PAMPAS)

Dzakula Z.

J Magn Reson. 2000 Sep;146(1):20-32.

PMID:
10968954
13.

Analysis of error propagation from NMR-derived internuclear distances into molecular structure of cyclo-pro-gly.

Dzakula Z, Juranić, DeRider ML, Westler WM, Macura S, Markley JL.

J Magn Reson. 1998 Dec;135(2):454-65.

PMID:
9878473
14.

Assignment of 1H, 13C, and 15N signals of turkey ovomucoid third domain at pH 2.0.

Choe S, Dzakula Z, Kuloglu ES, Markley JL.

J Biomol NMR. 1998 Jul;12(1):193-5. No abstract available.

PMID:
9729798
15.

Solution structure of the thermostable sweet-tasting protein brazzein.

Caldwell JE, Abildgaard F, Dzakula Z, Ming D, Hellekant G, Markley JL.

Nat Struct Biol. 1998 Jun;5(6):427-31.

PMID:
9628478
16.
17.

Continuous probability distribution (CUPID) analysis of potentials for internal rotations.

Dzakula Z, Westler WM, Markley JL.

J Magn Reson B. 1996 May;111(2):109-26. Erratum in: J Magn Reson B. 2008 Mar;191(1):169.

PMID:
8661269
18.

Biophysical models of protein denaturation. I. An improvement of the model of two states.

Dzakula Z, Andjus RK.

J Theor Biol. 1991 Nov 7;153(1):41-59.

PMID:
1766254
19.

Biophysical models of protein denaturation. II. Effects of denaturants and of pH.

Dzakula Z, Andjus RK, Bozić M.

J Theor Biol. 1991 Nov 7;153(1):61-88.

PMID:
1662734

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