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Items: 50

1.

Kīlauea lava fuels phytoplankton bloom in the North Pacific Ocean.

Wilson ST, Hawco NJ, Armbrust EV, Barone B, Björkman KM, Boysen AK, Burgos M, Burrell TJ, Casey JR, DeLong EF, Dugenne M, Dutkiewicz S, Dyhrman ST, Ferrón S, Follows MJ, Foreman RK, Funkey CP, Harke MJ, Henke BA, Hill CN, Hynes AM, Ingalls AE, Jahn O, Kelly RL, Knapp AN, Letelier RM, Ribalet F, Shimabukuro EM, Tabata RKS, Turk-Kubo KA, White AE, Zehr JP, John S, Karl DM.

Science. 2019 Sep 6;365(6457):1040-1044. doi: 10.1126/science.aax4767.

PMID:
31488692
2.

Transcriptional and Proteomic Choreography Under Phosphorus Deficiency and Re-supply in the N2 Fixing Cyanobacterium Trichodesmium erythraeum.

Frischkorn KR, Haley ST, Dyhrman ST.

Front Microbiol. 2019 Mar 5;10:330. doi: 10.3389/fmicb.2019.00330. eCollection 2019.

3.

Transcriptional Shifts Highlight the Role of Nutrients in Harmful Brown Tide Dynamics.

Wurch LL, Alexander H, Frischkorn KR, Haley ST, Gobler CJ, Dyhrman ST.

Front Microbiol. 2019 Feb 12;10:136. doi: 10.3389/fmicb.2019.00136. eCollection 2019.

4.

Non-linear Physiology and Gene Expression Responses of Harmful Alga Heterosigma akashiwo to Rising CO2.

Hennon GMM, Williamson OM, Hernández Limón MD, Haley ST, Dyhrman ST.

Protist. 2019 Feb;170(1):38-51. doi: 10.1016/j.protis.2018.10.002. Epub 2018 Oct 24.

PMID:
30576874
5.

Periodic and coordinated gene expression between a diazotroph and its diatom host.

Harke MJ, Frischkorn KR, Haley ST, Aylward FO, Zehr JP, Dyhrman ST.

ISME J. 2019 Jan;13(1):118-131. doi: 10.1038/s41396-018-0262-2. Epub 2018 Aug 16.

PMID:
30116042
6.

Shifting metabolic priorities among key protistan taxa within and below the euphotic zone.

Hu SK, Liu Z, Alexander H, Campbell V, Connell PE, Dyhrman ST, Heidelberg KB, Caron DA.

Environ Microbiol. 2018 Aug;20(8):2865-2879. doi: 10.1111/1462-2920.14259. Epub 2018 Jul 26.

PMID:
29708635
7.

Transcriptional patterns identify resource controls on the diazotroph Trichodesmium in the Atlantic and Pacific oceans.

Rouco M, Frischkorn KR, Haley ST, Alexander H, Dyhrman ST.

ISME J. 2018 Jun;12(6):1486-1495. doi: 10.1038/s41396-018-0087-z. Epub 2018 Feb 28.

8.

Coordinated gene expression between Trichodesmium and its microbiome over day-night cycles in the North Pacific Subtropical Gyre.

Frischkorn KR, Haley ST, Dyhrman ST.

ISME J. 2018 Apr;12(4):997-1007. doi: 10.1038/s41396-017-0041-5. Epub 2018 Jan 30.

9.

Diverse CO2-Induced Responses in Physiology and Gene Expression among Eukaryotic Phytoplankton.

Hennon GMM, Hernández Limón MD, Haley ST, Juhl AR, Dyhrman ST.

Front Microbiol. 2017 Dec 19;8:2547. doi: 10.3389/fmicb.2017.02547. eCollection 2017.

10.

The impact of elevated CO2 on Prochlorococcus and microbial interactions with 'helper' bacterium Alteromonas.

Hennon GM, Morris JJ, Haley ST, Zinser ER, Durrant AR, Entwistle E, Dokland T, Dyhrman ST.

ISME J. 2017 Oct 31. doi: 10.1038/ismej.2017.189. [Epub ahead of print]

11.

Transcriptional response of the harmful raphidophyte Heterosigma akashiwo to nitrate and phosphate stress.

Haley ST, Alexander H, Juhl AR, Dyhrman ST.

Harmful Algae. 2017 Sep;68:258-270. doi: 10.1016/j.hal.2017.07.001. Epub 2017 Sep 6.

PMID:
28962986
12.

Conserved Transcriptional Responses to Nutrient Stress in Bloom-Forming Algae.

Harke MJ, Juhl AR, Haley ST, Alexander H, Dyhrman ST.

Front Microbiol. 2017 Jul 18;8:1279. doi: 10.3389/fmicb.2017.01279. eCollection 2017.

13.

Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics.

Moniruzzaman M, Wurch LL, Alexander H, Dyhrman ST, Gobler CJ, Wilhelm SW.

Nat Commun. 2017 Jun 28;8:16054. doi: 10.1038/ncomms16054.

14.

Epibionts dominate metabolic functional potential of Trichodesmium colonies from the oligotrophic ocean.

Frischkorn KR, Rouco M, Van Mooy BAS, Dyhrman ST.

ISME J. 2017 Sep;11(9):2090-2101. doi: 10.1038/ismej.2017.74. Epub 2017 May 23.

15.

The Genetic Diversity of Mesodinium and Associated Cryptophytes.

Johnson MD, Beaudoin DJ, Laza-Martinez A, Dyhrman ST, Fensin E, Lin S, Merculief A, Nagai S, Pompeu M, Setälä O, Stoecker DK.

Front Microbiol. 2016 Dec 20;7:2017. doi: 10.3389/fmicb.2016.02017. eCollection 2016.

16.

Probing the evolution, ecology and physiology of marine protists using transcriptomics.

Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB, Kaye JZ, Metzner J, Smith SR, Worden AZ.

Nat Rev Microbiol. 2017 Jan;15(1):6-20. doi: 10.1038/nrmicro.2016.160. Epub 2016 Nov 21. Review.

PMID:
27867198
17.

Variable depth distribution of Trichodesmium clades in the North Pacific Ocean.

Rouco M, Haley ST, Alexander H, Wilson ST, Karl DM, Dyhrman ST.

Environ Microbiol Rep. 2016 Dec;8(6):1058-1066. doi: 10.1111/1758-2229.12488.

PMID:
27753237
18.

Microbial diversity within the Trichodesmium holobiont.

Rouco M, Haley ST, Dyhrman ST.

Environ Microbiol. 2016 Dec;18(12):5151-5160. doi: 10.1111/1462-2920.13513. Epub 2016 Sep 28.

PMID:
27581522
19.

Deciphering ocean carbon in a changing world.

Moran MA, Kujawinski EB, Stubbins A, Fatland R, Aluwihare LI, Buchan A, Crump BC, Dorrestein PC, Dyhrman ST, Hess NJ, Howe B, Longnecker K, Medeiros PM, Niggemann J, Obernosterer I, Repeta DJ, Waldbauer JR.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):3143-51. doi: 10.1073/pnas.1514645113. Epub 2016 Mar 7.

20.

Mesoscale eddies and Trichodesmium spp. distributions in the southwestern North Atlantic.

Olson EM, McGillicuddy DJ, Flierl GR, Davis CS, Dyhrman ST, Waterbury JB.

J Geophys Res Oceans. 2015 Jun;120(6):4129-4150. Epub 2015 Jun 8.

21.

Functional group-specific traits drive phytoplankton dynamics in the oligotrophic ocean.

Alexander H, Rouco M, Haley ST, Wilson ST, Karl DM, Dyhrman ST.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):E5972-9. doi: 10.1073/pnas.1518165112. Epub 2015 Oct 12.

22.

Phosphorus cycling. Major role of planktonic phosphate reduction in the marine phosphorus redox cycle.

Van Mooy BA, Krupke A, Dyhrman ST, Fredricks HF, Frischkorn KR, Ossolinski JE, Repeta DJ, Rouco M, Seewald JD, Sylva SP.

Science. 2015 May 15;348(6236):783-5. doi: 10.1126/science.aaa8181.

23.

Metatranscriptome analyses indicate resource partitioning between diatoms in the field.

Alexander H, Jenkins BD, Rynearson TA, Dyhrman ST.

Proc Natl Acad Sci U S A. 2015 Apr 28;112(17):E2182-90. doi: 10.1073/pnas.1421993112. Epub 2015 Apr 13. Erratum in: Proc Natl Acad Sci U S A. 2016 Jun 21;113(25):E3589.

24.

De novo assembly of Aureococcus anophagefferens transcriptomes reveals diverse responses to the low nutrient and low light conditions present during blooms.

Frischkorn KR, Harke MJ, Gobler CJ, Dyhrman ST.

Front Microbiol. 2014 Jul 24;5:375. doi: 10.3389/fmicb.2014.00375. eCollection 2014.

25.

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, Cattolico RA, Collier JL, Coyne K, Davy SK, Deschamps P, Dyhrman ST, Edvardsen B, Gates RD, Gobler CJ, Greenwood SJ, Guida SM, Jacobi JL, Jakobsen KS, James ER, Jenkins B, John U, Johnson MD, Juhl AR, Kamp A, Katz LA, Kiene R, Kudryavtsev A, Leander BS, Lin S, Lovejoy C, Lynn D, Marchetti A, McManus G, Nedelcu AM, Menden-Deuer S, Miceli C, Mock T, Montresor M, Moran MA, Murray S, Nadathur G, Nagai S, Ngam PB, Palenik B, Pawlowski J, Petroni G, Piganeau G, Posewitz MC, Rengefors K, Romano G, Rumpho ME, Rynearson T, Schilling KB, Schroeder DC, Simpson AG, Slamovits CH, Smith DR, Smith GJ, Smith SR, Sosik HM, Stief P, Theriot E, Twary SN, Umale PE, Vaulot D, Wawrik B, Wheeler GL, Wilson WH, Xu Y, Zingone A, Worden AZ.

PLoS Biol. 2014 Jun 24;12(6):e1001889. doi: 10.1371/journal.pbio.1001889. eCollection 2014 Jun. No abstract available.

26.

Accumulation and enhanced cycling of polyphosphate by Sargasso Sea plankton in response to low phosphorus.

Martin P, Dyhrman ST, Lomas MW, Poulton NJ, Van Mooy BA.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8089-94. doi: 10.1073/pnas.1321719111. Epub 2014 Apr 21.

27.
28.

Pan genome of the phytoplankton Emiliania underpins its global distribution.

Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G; Emiliania huxleyi Annotation Consortium, Dacks JB, Delwiche CF, Dyhrman ST, Glöckner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV.

Nature. 2013 Jul 11;499(7457):209-13. doi: 10.1038/nature12221. Epub 2013 Jun 12.

PMID:
23760476
29.

Identifying reference genes with stable expression from high throughput sequence data.

Alexander H, Jenkins BD, Rynearson TA, Saito MA, Mercier ML, Dyhrman ST.

Front Microbiol. 2012 Nov 9;3:385. doi: 10.3389/fmicb.2012.00385. eCollection 2012.

30.

Dissolved Organic Phosphorus Production during Simulated Phytoplankton Blooms in a Coastal Upwelling System.

Ruttenberg KC, Dyhrman ST.

Front Microbiol. 2012 Aug 6;3:274. doi: 10.3389/fmicb.2012.00274. eCollection 2012.

31.

The transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response.

Dyhrman ST, Jenkins BD, Rynearson TA, Saito MA, Mercier ML, Alexander H, Whitney LP, Drzewianowski A, Bulygin VV, Bertrand EM, Wu Z, Benitez-Nelson C, Heithoff A.

PLoS One. 2012;7(3):e33768. doi: 10.1371/journal.pone.0033768. Epub 2012 Mar 29.

32.

Proteome changes driven by phosphorus deficiency and recovery in the brown tide-forming alga Aureococcus anophagefferens.

Wurch LL, Bertrand EM, Saito MA, Van Mooy BA, Dyhrman ST.

PLoS One. 2011;6(12):e28949. doi: 10.1371/journal.pone.0028949. Epub 2011 Dec 14.

33.

Arsenate Resistance in the Unicellular Marine Diazotroph Crocosphaera watsonii.

Dyhrman ST, Haley ST.

Front Microbiol. 2011 Oct 25;2:214. doi: 10.3389/fmicb.2011.00214. eCollection 2011.

34.

Quorum sensing control of phosphorus acquisition in Trichodesmium consortia.

Van Mooy BA, Hmelo LR, Sofen LE, Campagna SR, May AL, Dyhrman ST, Heithoff A, Webb EA, Momper L, Mincer TJ.

ISME J. 2012 Feb;6(2):422-9. doi: 10.1038/ismej.2011.115. Epub 2011 Sep 8.

35.

Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics.

Gobler CJ, Berry DL, Dyhrman ST, Wilhelm SW, Salamov A, Lobanov AV, Zhang Y, Collier JL, Wurch LL, Kustka AB, Dill BD, Shah M, VerBerkmoes NC, Kuo A, Terry A, Pangilinan J, Lindquist EA, Lucas S, Paulsen IT, Hattenrath-Lehmann TK, Talmage SC, Walker EA, Koch F, Burson AM, Marcoval MA, Tang YZ, Lecleir GR, Coyne KJ, Berg GM, Bertrand EM, Saito MA, Gladyshev VN, Grigoriev IV.

Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4352-7. doi: 10.1073/pnas.1016106108. Epub 2011 Feb 23.

36.

Phosphorus supply drives rapid turnover of membrane phospholipids in the diatom Thalassiosira pseudonana.

Martin P, Van Mooy BA, Heithoff A, Dyhrman ST.

ISME J. 2011 Jun;5(6):1057-60. doi: 10.1038/ismej.2010.192. Epub 2010 Dec 16.

37.

Empirical bayes analysis of sequencing-based transcriptional profiling without replicates.

Wu Z, Jenkins BD, Rynearson TA, Dyhrman ST, Saito MA, Mercier M, Whitney LP.

BMC Bioinformatics. 2010 Nov 16;11:564. doi: 10.1186/1471-2105-11-564.

38.

Nutrient-regulated transcriptional responses in the brown tide-forming alga Aureococcus anophagefferens.

Wurch LL, Haley ST, Orchard ED, Gobler CJ, Dyhrman ST.

Environ Microbiol. 2011 Feb;13(2):468-81. doi: 10.1111/j.1462-2920.2010.02351.x. Epub 2010 Sep 30.

39.

Parallel analyses of Alexandrium catenella cell concentrations and shellfish toxicity in the Puget Sound.

Dyhrman ST, Haley ST, Borchert JA, Lona B, Kollars N, Erdner DL.

Appl Environ Microbiol. 2010 Jul;76(14):4647-54. doi: 10.1128/AEM.03095-09. Epub 2010 May 21.

40.

Microbial community gene expression within colonies of the diazotroph, Trichodesmium, from the Southwest Pacific Ocean.

Hewson I, Poretsky RS, Dyhrman ST, Zielinski B, White AE, Tripp HJ, Montoya JP, Zehr JP.

ISME J. 2009 Nov;3(11):1286-300. doi: 10.1038/ismej.2009.75. Epub 2009 Jul 2.

PMID:
19571897
41.

Molecular analysis of the phosphorus starvation response in Trichodesmium spp.

Orchard ED, Webb EA, Dyhrman ST.

Environ Microbiol. 2009 Sep;11(9):2400-11. doi: 10.1111/j.1462-2920.2009.01968.x. Epub 2009 Jun 25.

PMID:
19555381
42.

Detection and expression of the phosphonate transporter gene phnD in marine and freshwater picocyanobacteria.

Ilikchyan IN, McKay RM, Zehr JP, Dyhrman ST, Bullerjahn GS.

Environ Microbiol. 2009 May;11(5):1314-24. doi: 10.1111/j.1462-2920.2009.01869.x. Epub 2009 Feb 10.

PMID:
19220397
43.

Phytoplankton in the ocean use non-phosphorus lipids in response to phosphorus scarcity.

Van Mooy BA, Fredricks HF, Pedler BE, Dyhrman ST, Karl DM, Koblízek M, Lomas MW, Mincer TJ, Moore LR, Moutin T, Rappé MS, Webb EA.

Nature. 2009 Mar 5;458(7234):69-72. doi: 10.1038/nature07659.

PMID:
19182781
44.

Cell-specific beta-N-acetylglucosaminidase activity in cultures and field populations of eukaryotic marine phytoplankton.

Strojsová A, Dyhrman ST.

FEMS Microbiol Ecol. 2008 Jun;64(3):351-61. doi: 10.1111/j.1574-6941.2008.00479.x. Epub 2008 Apr 21.

45.

Phosphorus scavenging in the unicellular marine diazotroph Crocosphaera watsonii.

Dyhrman ST, Haley ST.

Appl Environ Microbiol. 2006 Feb;72(2):1452-8.

46.

Phosphonate utilization by the globally important marine diazotroph Trichodesmium.

Dyhrman ST, Chappell PD, Haley ST, Moffett JW, Orchard ED, Waterbury JB, Webb EA.

Nature. 2006 Jan 5;439(7072):68-71.

PMID:
16397497
47.

Long serial analysis of gene expression for gene discovery and transcriptome profiling in the widespread marine coccolithophore Emiliania huxleyi.

Dyhrman ST, Haley ST, Birkeland SR, Wurch LL, Cipriano MJ, McArthur AG.

Appl Environ Microbiol. 2006 Jan;72(1):252-60.

48.

Alkaline Phosphatase Activity in the Toxic Dinoflagellate Karenia brevis.

Craney AC, Haley ST, Dyhrman ST.

Biol Bull. 2004 Oct;207(2):174. No abstract available.

PMID:
27690594
50.

In situ cytokine production by breast cancer tumor-infiltrating lymphocytes.

Camp BJ, Dyhrman ST, Memoli VA, Mott LA, Barth RJ Jr.

Ann Surg Oncol. 1996 Mar;3(2):176-84.

PMID:
8646519

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