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Items: 1 to 50 of 104

1.

A zoonotic adenoviral human pathogen emerged through genomic recombination amongst human and nonhuman simian hosts.

Dehghan S, Seto J, Liu EB, Ismail AM, Madupu R, Heim A, Jones MS, Dyer DW, Chodosh J, Seto D.

J Virol. 2019 Jun 26. pii: JVI.00564-19. doi: 10.1128/JVI.00564-19. [Epub ahead of print]

PMID:
31243128
2.

Divergent Evolution of E1A CR3 in Human Adenovirus Species D.

Singh G, Ismail AM, Lee JY, Ramke M, Lee JS, Dyer DW, Seto D, Rajaiya J, Chodosh J.

Viruses. 2019 Feb 8;11(2). pii: E143. doi: 10.3390/v11020143.

3.

Draft Genome Sequence of Pediatric Otitis Media Isolate Streptococcus pneumoniae Strain EF3030, Which Forms In Vitro Biofilms That Closely Mimic In Vivo Biofilms.

Scott EJ 2nd, Luke-Marshall NR, Campagnari AA, Dyer DW.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01114-18. doi: 10.1128/MRA.01114-18. eCollection 2019 Jan.

4.

Corrigendum: Adenoviromics: Mining the Human Adenovirus Species D Genome.

Ismail AM, Lee JS, Lee JY, Singh G, Dyer DW, Seto D, Chodosh J, Rajaiya J.

Front Microbiol. 2018 Dec 4;9:3005. doi: 10.3389/fmicb.2018.03005. eCollection 2018.

5.

Author Correction: Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens.

Ismail AM, Cui T, Dommaraju K, Singh G, Dehghan S, Seto J, Shrivastava S, Fedorova NB, Gupta N, Stockwell TB, Halpin R, Madupu R, Heim A, Kajon AE, Romanowski EG, Kowalski RP, Malathi J, Therese KL, Madhavan HN, Zhang Q, Ferreyra LJ, Jones MS, Rajaiya J, Dyer DW, Chodosh J, Seto D.

Emerg Microbes Infect. 2018 Dec 8;7(1):208. doi: 10.1038/s41426-018-0200-4.

6.

Adenoviromics: Mining the Human Adenovirus Species D Genome.

Ismail AM, Lee JS, Lee JY, Singh G, Dyer DW, Seto D, Chodosh J, Rajaiya J.

Front Microbiol. 2018 Sep 11;9:2178. doi: 10.3389/fmicb.2018.02178. eCollection 2018. Review. Erratum in: Front Microbiol. 2018 Dec 04;9:3005.

7.

Bacterial RecA Protein Promotes Adenoviral Recombination during In Vitro Infection.

Lee JY, Lee JS, Materne EC, Rajala R, Ismail AM, Seto D, Dyer DW, Rajaiya J, Chodosh J.

mSphere. 2018 Jun 20;3(3). pii: e00105-18. doi: 10.1128/mSphere.00105-18. Print 2018 Jun 27.

8.

Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens.

Ismail AM, Cui T, Dommaraju K, Singh G, Dehghan S, Seto J, Shrivastava S, Fedorova NB, Gupta N, Stockwell TB, Halpin R, Madupu R, Heim A, Kajon AE, Romanowski EG, Kowalski RP, Malathi J, Therese KL, Madhavan HN, Zhang Q, Ferreyra LJ, Jones MS, Rajaiya J, Dyer DW, Chodosh J, Seto D.

Emerg Microbes Infect. 2018 Feb 7;7(1):10. doi: 10.1038/s41426-017-0004-y. Erratum in: Emerg Microbes Infect. 2018 Dec 8;7(1):208.

9.

Route of infection alters virulence of neonatal septicemia Escherichia coli clinical isolates.

Cole BK, Scott E, Ilikj M, Bard D, Akins DR, Dyer DW, Chavez-Bueno S.

PLoS One. 2017 Dec 13;12(12):e0189032. doi: 10.1371/journal.pone.0189032. eCollection 2017.

10.

Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth.

Jackson LA, Day M, Allen J, Scott E 2nd, Dyer DW.

BMC Genomics. 2017 Apr 21;18(1):317. doi: 10.1186/s12864-017-3684-8.

11.

The 5'UTR in human adenoviruses: leader diversity in late gene expression.

Ramke M, Lee JY, Dyer DW, Seto D, Rajaiya J, Chodosh J.

Sci Rep. 2017 Apr 4;7(1):618. doi: 10.1038/s41598-017-00747-y.

12.

Selection Pressure in the Human Adenovirus Fiber Knob Drives Cell Specificity in Epidemic Keratoconjunctivitis.

Ismail AM, Lee JS, Dyer DW, Seto D, Rajaiya J, Chodosh J.

J Virol. 2016 Oct 14;90(21):9598-9607. doi: 10.1128/JVI.01010-16. Print 2016 Nov 1.

13.

Consensus computational network analysis for identifying candidate outer membrane proteins from Borrelia spirochetes.

Kenedy MR, Scott EJ 2nd, Shrestha B, Anand A, Iqbal H, Radolf JD, Dyer DW, Akins DR.

BMC Microbiol. 2016 Jul 11;16(1):141. doi: 10.1186/s12866-016-0762-z.

14.

Recombination of the epsilon determinant and corneal tropism: Human adenovirus species D types 15, 29, 56, and 69.

Singh G, Zhou X, Lee JY, Yousuf MA, Ramke M, Ismail AM, Lee JS, Robinson CM, Seto D, Dyer DW, Jones MS, Rajaiya J, Chodosh J.

Virology. 2015 Nov;485:452-9. doi: 10.1016/j.virol.2015.08.018. Epub 2015 Sep 7.

15.

Whole-Genome Sequences of the Archetypal K1 Escherichia coli Neonatal Isolate RS218 and Contemporary Neonatal Bacteremia Clinical Isolates SCB11, SCB12, and SCB15.

Day MW, Jackson LA, Akins DR, Dyer DW, Chavez-Bueno S.

Genome Announc. 2015 Feb 26;3(1). pii: e01598-14. doi: 10.1128/genomeA.01598-14.

16.

Divergence of protein-coding capacity and regulation in the Bacillus cereus sensu lato group.

Toby IT, Widmer J, Dyer DW.

BMC Bioinformatics. 2014;15 Suppl 11:S8. doi: 10.1186/1471-2105-15-S11-S8. Epub 2014 Oct 21.

17.

Genome Sequence of SCB34, a Sequence Type 131 Multidrug-Resistant Escherichia coli Isolate Causing Neonatal Early-Onset Sepsis.

Chavez-Bueno S, Day MW, Toby IT, Akins DR, Dyer DW.

Genome Announc. 2014 Jun 12;2(3). pii: e00514-14. doi: 10.1128/genomeA.00514-14.

18.

Simian adenovirus type 35 has a recombinant genome comprising human and simian adenovirus sequences, which predicts its potential emergence as a human respiratory pathogen.

Dehghan S, Seto J, Jones MS, Dyer DW, Chodosh J, Seto D.

Virology. 2013 Dec;447(1-2):265-73. doi: 10.1016/j.virol.2013.09.009. Epub 2013 Oct 8.

19.

Characterizing, typing, and naming human adenovirus type 55 in the era of whole genome data.

Seto D, Jones MS, Dyer DW, Chodosh J.

J Clin Virol. 2013 Dec;58(4):741-2. doi: 10.1016/j.jcv.2013.09.025. Epub 2013 Oct 5. No abstract available.

PMID:
24161575
20.

Control of RNA stability by NrrF, an iron-regulated small RNA in Neisseria gonorrhoeae.

Jackson LA, Pan JC, Day MW, Dyer DW.

J Bacteriol. 2013 Nov;195(22):5166-73. doi: 10.1128/JB.00839-13. Epub 2013 Sep 13.

21.

Homologous recombination in E3 genes of human adenovirus species D.

Singh G, Robinson CM, Dehghan S, Jones MS, Dyer DW, Seto D, Chodosh J.

J Virol. 2013 Nov;87(22):12481-8. doi: 10.1128/JVI.01927-13. Epub 2013 Sep 11.

22.

Computational analysis of four human adenovirus type 4 genomes reveals molecular evolution through two interspecies recombination events.

Dehghan S, Seto J, Liu EB, Walsh MP, Dyer DW, Chodosh J, Seto D.

Virology. 2013 Sep 1;443(2):197-207. doi: 10.1016/j.virol.2013.05.014. Epub 2013 Jun 10.

23.

Molecular evolution of human adenoviruses.

Robinson CM, Singh G, Lee JY, Dehghan S, Rajaiya J, Liu EB, Yousuf MA, Betensky RA, Jones MS, Dyer DW, Seto D, Chodosh J.

Sci Rep. 2013;3:1812. doi: 10.1038/srep01812.

24.

Predicting the next eye pathogen: analysis of a novel adenovirus.

Robinson CM, Zhou X, Rajaiya J, Yousuf MA, Singh G, DeSerres JJ, Walsh MP, Wong S, Seto D, Dyer DW, Chodosh J, Jones MS.

MBio. 2013 Apr 9;4(2):e00595-12. doi: 10.1128/mBio.00595-12.

25.

Divergence of the SigB regulon and pathogenesis of the Bacillus cereus sensu lato group.

Scott E 2nd, Dyer DW.

BMC Genomics. 2012 Oct 22;13:564. doi: 10.1186/1471-2164-13-564.

26.

Protocol for gene expression profiling using DNA microarrays in Neisseria gonorrhoeae.

Jackson LA, Dyer DW.

Methods Mol Biol. 2012;903:343-57. doi: 10.1007/978-1-61779-937-2_24.

27.

Genome sequence of the fish pathogen Flavobacterium columnare ATCC 49512.

Tekedar HC, Karsi A, Gillaspy AF, Dyer DW, Benton NR, Zaitshik J, Vamenta S, Banes MM, G├╝lsoy N, Aboko-Cole M, Waldbieser GC, Lawrence ML.

J Bacteriol. 2012 May;194(10):2763-4. doi: 10.1128/JB.00281-12.

28.

Analysis of human adenovirus type 19 associated with epidemic keratoconjunctivitis and its reclassification as adenovirus type 64.

Zhou X, Robinson CM, Rajaiya J, Dehghan S, Seto D, Jones MS, Dyer DW, Chodosh J.

Invest Ophthalmol Vis Sci. 2012 May 14;53(6):2804-11. doi: 10.1167/iovs.12-9656.

29.

Computational and serologic analysis of novel and known viruses in species human adenovirus D in which serology and genomics do not correlate.

Liu EB, Wadford DA, Seto J, Vu M, Hudson NR, Thrasher L, Torres S, Dyer DW, Chodosh J, Seto D, Jones MS.

PLoS One. 2012;7(3):e33212. doi: 10.1371/journal.pone.0033212. Epub 2012 Mar 13.

30.

Overreliance on the hexon gene, leading to misclassification of human adenoviruses.

Singh G, Robinson CM, Dehghan S, Schmidt T, Seto D, Jones MS, Dyer DW, Chodosh J.

J Virol. 2012 Apr;86(8):4693-5. doi: 10.1128/JVI.06969-11. Epub 2012 Feb 1.

31.

Genome sequence of Edwardsiella ictaluri 93-146, a strain associated with a natural channel catfish outbreak of enteric septicemia of catfish.

Williams ML, Gillaspy AF, Dyer DW, Thune RL, Waldbieser GC, Schuster SC, Gipson J, Zaitshik J, Landry C, Banes MM, Lawrence ML.

J Bacteriol. 2012 Feb;194(3):740-1. doi: 10.1128/JB.06522-11.

32.

MpeR regulates the mtr efflux locus in Neisseria gonorrhoeae and modulates antimicrobial resistance by an iron-responsive mechanism.

Mercante AD, Jackson L, Johnson PJ, Stringer VA, Dyer DW, Shafer WM.

Antimicrob Agents Chemother. 2012 Mar;56(3):1491-501. doi: 10.1128/AAC.06112-11. Epub 2012 Jan 3.

33.

Genome sequence of Haemophilus parasuis strain 29755.

Mullins MA, Register KB, Bayles DO, Dyer DW, Kuehn JS, Phillips GJ.

Stand Genomic Sci. 2011 Oct 15;5(1):61-8. doi: 10.4056/sigs.2245029. Epub 2011 Sep 23.

34.

Five genome sequences of subspecies B1 human adenoviruses associated with acute respiratory disease.

Dehghan S, Liu EB, Seto J, Torres SF, Hudson NR, Kajon AE, Metzgar D, Dyer DW, Chodosh J, Jones MS, Seto D.

J Virol. 2012 Jan;86(1):635-6. doi: 10.1128/JVI.06593-11.

35.

Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses.

Siddaramappa S, Challacombe JF, Duncan AJ, Gillaspy AF, Carson M, Gipson J, Orvis J, Zaitshik J, Barnes G, Bruce D, Chertkov O, Detter JC, Han CS, Tapia R, Thompson LS, Dyer DW, Inzana TJ.

BMC Genomics. 2011 Nov 23;12:570. doi: 10.1186/1471-2164-12-570.

36.

Complete genome sequence of human adenovirus prototype 17.

Dehghan S, Seto J, Hudson NR, Robinson CM, Jones MS, Dyer DW, Chodosh J, Seto D.

J Virol. 2011 Nov;85(21):11540-1. doi: 10.1128/JVI.06051-11.

37.

Genetic analysis of a novel human adenovirus with a serologically unique hexon and a recombinant fiber gene.

Liu EB, Ferreyra L, Fischer SL, Pavan JV, Nates SV, Hudson NR, Tirado D, Dyer DW, Chodosh J, Seto D, Jones MS.

PLoS One. 2011;6(9):e24491. doi: 10.1371/journal.pone.0024491. Epub 2011 Sep 7.

38.

Whole-genome phylogenies of the family Bacillaceae and expansion of the sigma factor gene family in the Bacillus cereus species-group.

Schmidt TR, Scott EJ 2nd, Dyer DW.

BMC Genomics. 2011 Aug 24;12:430. doi: 10.1186/1471-2164-12-430.

39.

Computational analysis of two species C human adenoviruses provides evidence of a novel virus.

Walsh MP, Seto J, Liu EB, Dehghan S, Hudson NR, Lukashev AN, Ivanova O, Chodosh J, Dyer DW, Jones MS, Seto D.

J Clin Microbiol. 2011 Oct;49(10):3482-90. doi: 10.1128/JCM.00156-11. Epub 2011 Aug 17.

40.

The E3 CR1-gamma gene in human adenoviruses associated with epidemic keratoconjunctivitis.

Robinson CM, Rajaiya J, Zhou X, Singh G, Dyer DW, Chodosh J.

Virus Res. 2011 Sep;160(1-2):120-7. doi: 10.1016/j.virusres.2011.05.022. Epub 2011 Jun 12.

41.

Molecular evolution of human species D adenoviruses.

Robinson CM, Seto D, Jones MS, Dyer DW, Chodosh J.

Infect Genet Evol. 2011 Aug;11(6):1208-17. doi: 10.1016/j.meegid.2011.04.031. Epub 2011 May 5.

42.

Sequence variation in the herpes simplex virus U(S)1 ocular virulence determinant.

Kolb AW, Schmidt TR, Dyer DW, Brandt CR.

Invest Ophthalmol Vis Sci. 2011 Jun 28;52(7):4630-8. doi: 10.1167/iovs.10-7032.

43.

Computational analysis and identification of an emergent human adenovirus pathogen implicated in a respiratory fatality.

Robinson CM, Singh G, Henquell C, Walsh MP, Peigue-Lafeuille H, Seto D, Jones MS, Dyer DW, Chodosh J.

Virology. 2011 Jan 20;409(2):141-7. doi: 10.1016/j.virol.2010.10.020. Epub 2010 Nov 5.

44.

Transcriptional and functional analysis of the Neisseria gonorrhoeae Fur regulon.

Jackson LA, Ducey TF, Day MW, Zaitshik JB, Orvis J, Dyer DW.

J Bacteriol. 2010 Jan;192(1):77-85. doi: 10.1128/JB.00741-09.

45.

Characterization and comparative analysis of the genes encoding Haemophilus parasuis outer membrane proteins P2 and P5.

Mullins MA, Register KB, Bayles DO, Loving CL, Nicholson TL, Brockmeier SL, Dyer DW, Phillips GJ.

J Bacteriol. 2009 Oct;191(19):5988-6002. doi: 10.1128/JB.00469-09. Epub 2009 Jul 24.

46.

Computational analysis of human adenovirus type 22 provides evidence for recombination among species D human adenoviruses in the penton base gene.

Robinson CM, Rajaiya J, Walsh MP, Seto D, Dyer DW, Jones MS, Chodosh J.

J Virol. 2009 Sep;83(17):8980-5. doi: 10.1128/JVI.00786-09. Epub 2009 Jun 24.

47.

Transcript analysis of nrrF, a Fur repressed sRNA of Neisseria gonorrhoeae.

Ducey TF, Jackson L, Orvis J, Dyer DW.

Microb Pathog. 2009 Mar;46(3):166-70. doi: 10.1016/j.micpath.2008.12.003. Epub 2009 Jan 6.

48.

Human adenovirus type 19: genomic and bioinformatics analysis of a keratoconjunctivitis isolate.

Robinson CM, Shariati F, Zaitshik J, Gillaspy AF, Dyer DW, Chodosh J.

Virus Res. 2009 Jan;139(1):122-6. doi: 10.1016/j.virusres.2008.10.001. Epub 2008 Dec 4.

49.

MtrR modulates rpoH expression and levels of antimicrobial resistance in Neisseria gonorrhoeae.

Folster JP, Johnson PJ, Jackson L, Dhulipali V, Dyer DW, Shafer WM.

J Bacteriol. 2009 Jan;191(1):287-97. doi: 10.1128/JB.01165-08. Epub 2008 Oct 31.

50.

Genomic and bioinformatics analysis of human adenovirus type 37: new insights into corneal tropism.

Robinson CM, Shariati F, Gillaspy AF, Dyer DW, Chodosh J.

BMC Genomics. 2008 May 9;9:213. doi: 10.1186/1471-2164-9-213.

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