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Items: 39

1.

BLANKA: an Algorithm for Blank Subtraction in Mass Spectrometry of Complex Biological Samples.

Cleary JL, Luu GT, Pierce EC, Dutton RJ, Sanchez LM.

J Am Soc Mass Spectrom. 2019 Aug;30(8):1426-1434. doi: 10.1007/s13361-019-02185-8. Epub 2019 Apr 16.

PMID:
30993641
2.

Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi.

Peters JM, Koo BM, Patino R, Heussler GE, Hearne CC, Qu J, Inclan YF, Hawkins JS, Lu CHS, Silvis MR, Harden MM, Osadnik H, Peters JE, Engel JN, Dutton RJ, Grossman AD, Gross CA, Rosenberg OS.

Nat Microbiol. 2019 Feb;4(2):244-250. doi: 10.1038/s41564-018-0327-z. Epub 2019 Jan 7.

3.

Changes in the genetic requirements for microbial interactions with increasing community complexity.

Morin M, Pierce EC, Dutton RJ.

Elife. 2018 Sep 13;7. pii: e37072. doi: 10.7554/eLife.37072.

4.

Extensive horizontal gene transfer in cheese-associated bacteria.

Bonham KS, Wolfe BE, Dutton RJ.

Elife. 2017 Jun 23;6. pii: e22144. doi: 10.7554/eLife.22144.

5.

Erratum for Kastman et al., "Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species".

Kastman EK, Kamelamela N, Norville JW, Cosetta CM, Dutton RJ, Wolfe BE.

MBio. 2017 Mar 21;8(2). pii: e00329-17. doi: 10.1128/mBio.00329-17. No abstract available.

6.

mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking.

Bokulich NA, Rideout JR, Mercurio WG, Shiffer A, Wolfe B, Maurice CF, Dutton RJ, Turnbaugh PJ, Knight R, Caporaso JG.

mSystems. 2016 Oct 18;1(5). pii: e00062-16. eCollection 2016 Sep-Oct.

7.

From Sample to Multi-Omics Conclusions in under 48 Hours.

Quinn RA, Navas-Molina JA, Hyde ER, Song SJ, Vázquez-Baeza Y, Humphrey G, Gaffney J, Minich JJ, Melnik AV, Herschend J, DeReus J, Durant A, Dutton RJ, Khosroheidari M, Green C, da Silva R, Dorrestein PC, Knight R.

mSystems. 2016 Apr 26;1(2). pii: e00038-16. eCollection 2016 Mar-Apr.

8.

Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species.

Kastman EK, Kamelamela N, Norville JW, Cosetta CM, Dutton RJ, Wolfe BE.

MBio. 2016 Oct 18;7(5). pii: e01157-16. doi: 10.1128/mBio.01157-16. Erratum in: MBio. 2017 Mar 21;8(2):.

9.

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.

Wang M, Carver JJ, Phelan VV, Sanchez LM, Garg N, Peng Y, Nguyen DD, Watrous J, Kapono CA, Luzzatto-Knaan T, Porto C, Bouslimani A, Melnik AV, Meehan MJ, Liu WT, Crüsemann M, Boudreau PD, Esquenazi E, Sandoval-Calderón M, Kersten RD, Pace LA, Quinn RA, Duncan KR, Hsu CC, Floros DJ, Gavilan RG, Kleigrewe K, Northen T, Dutton RJ, Parrot D, Carlson EE, Aigle B, Michelsen CF, Jelsbak L, Sohlenkamp C, Pevzner P, Edlund A, McLean J, Piel J, Murphy BT, Gerwick L, Liaw CC, Yang YL, Humpf HU, Maansson M, Keyzers RA, Sims AC, Johnson AR, Sidebottom AM, Sedio BE, Klitgaard A, Larson CB, P CAB, Torres-Mendoza D, Gonzalez DJ, Silva DB, Marques LM, Demarque DP, Pociute E, O'Neill EC, Briand E, Helfrich EJN, Granatosky EA, Glukhov E, Ryffel F, Houson H, Mohimani H, Kharbush JJ, Zeng Y, Vorholt JA, Kurita KL, Charusanti P, McPhail KL, Nielsen KF, Vuong L, Elfeki M, Traxler MF, Engene N, Koyama N, Vining OB, Baric R, Silva RR, Mascuch SJ, Tomasi S, Jenkins S, Macherla V, Hoffman T, Agarwal V, Williams PG, Dai J, Neupane R, Gurr J, Rodríguez AMC, Lamsa A, Zhang C, Dorrestein K, Duggan BM, Almaliti J, Allard PM, Phapale P, Nothias LF, Alexandrov T, Litaudon M, Wolfender JL, Kyle JE, Metz TO, Peryea T, Nguyen DT, VanLeer D, Shinn P, Jadhav A, Müller R, Waters KM, Shi W, Liu X, Zhang L, Knight R, Jensen PR, Palsson BO, Pogliano K, Linington RG, Gutiérrez M, Lopes NP, Gerwick WH, Moore BS, Dorrestein PC, Bandeira N.

Nat Biotechnol. 2016 Aug 9;34(8):828-837. doi: 10.1038/nbt.3597.

10.

The significance of cooking for early hominin scavenging.

Smith AR, Carmody RN, Dutton RJ, Wrangham RW.

J Hum Evol. 2015 Jul;84:62-70. doi: 10.1016/j.jhevol.2015.03.013. Epub 2015 May 8.

PMID:
25962548
11.

Fermented foods as experimentally tractable microbial ecosystems.

Wolfe BE, Dutton RJ.

Cell. 2015 Mar 26;161(1):49-55. doi: 10.1016/j.cell.2015.02.034. Review.

12.

Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity.

Wolfe BE, Button JE, Santarelli M, Dutton RJ.

Cell. 2014 Jul 17;158(2):422-433. doi: 10.1016/j.cell.2014.05.041.

13.

Diet rapidly and reproducibly alters the human gut microbiome.

David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, Ling AV, Devlin AS, Varma Y, Fischbach MA, Biddinger SB, Dutton RJ, Turnbaugh PJ.

Nature. 2014 Jan 23;505(7484):559-63. doi: 10.1038/nature12820. Epub 2013 Dec 11.

14.

Towards an Ecosystem Approach to Cheese Microbiology.

Wolfe BE, Dutton RJ.

Microbiol Spectr. 2013 Oct;1(1). doi: 10.1128/microbiolspec.CM-0012-12.

PMID:
26184819
15.

Real-time metabolomics on living microorganisms using ambient electrospray ionization flow-probe.

Hsu CC, ElNaggar MS, Peng Y, Fang J, Sanchez LM, Mascuch SJ, Møller KA, Alazzeh EK, Pikula J, Quinn RA, Zeng Y, Wolfe BE, Dutton RJ, Gerwick L, Zhang L, Liu X, Månsson M, Dorrestein PC.

Anal Chem. 2013 Aug 6;85(15):7014-8. doi: 10.1021/ac401613x. Epub 2013 Jul 11.

16.

Taking a metagenomic view of human nutrition.

Dutton RJ, Turnbaugh PJ.

Curr Opin Clin Nutr Metab Care. 2012 Sep;15(5):448-54. doi: 10.1097/MCO.0b013e3283561133. Review.

PMID:
22878238
17.

Cheese microbes.

Button JE, Dutton RJ.

Curr Biol. 2012 Aug 7;22(15):R587-9. doi: 10.1016/j.cub.2012.06.014. No abstract available.

18.

Overexpression of the rhodanese PspE, a single cysteine-containing protein, restores disulphide bond formation to an Escherichia coli strain lacking DsbA.

Chng SS, Dutton RJ, Denoncin K, Vertommen D, Collet JF, Kadokura H, Beckwith J.

Mol Microbiol. 2012 Sep;85(5):996-1006. doi: 10.1111/j.1365-2958.2012.08157.x. Epub 2012 Jul 19.

19.

A new family of membrane electron transporters and its substrates, including a new cell envelope peroxiredoxin, reveal a broadened reductive capacity of the oxidative bacterial cell envelope.

Cho SH, Parsonage D, Thurston C, Dutton RJ, Poole LB, Collet JF, Beckwith J.

MBio. 2012 Apr 3;3(2). pii: e00291-11. doi: 10.1128/mBio.00291-11. Print 2012.

20.

Direct interaction of FliX and FlbD is required for their regulatory activity in Caulobacter crescentus.

Xu Z, Dutton RJ, Gober JW.

BMC Microbiol. 2011 May 2;11:89. doi: 10.1186/1471-2180-11-89.

21.

U.S.-Mexico cross-border workforce training needs: survey implementation.

Rosales CB, Nuno T, Dieke A, Galvez FN, Dutton RJ, Guerrero R, Dulin P, Jiménez EA, Granillo B, de Zapien JG.

J Inj Violence Res. 2011 Jan;3(1):1-11. doi: 10.5249/jivr.v3i1.55.

22.

Complete genome sequence of Candidatus Ruthia magnifica.

Roeselers G, Newton IL, Woyke T, Auchtung TA, Dilly GF, Dutton RJ, Fisher MC, Fontanez KM, Lau E, Stewart FJ, Richardson PM, Barry KW, Saunders E, Detter JC, Wu D, Eisen JA, Cavanaugh CM.

Stand Genomic Sci. 2010 Oct 27;3(2):163-73. doi: 10.4056/sigs.1103048.

23.

Membrane topology and mutational analysis of Mycobacterium tuberculosis VKOR, a protein involved in disulfide bond formation and a homologue of human vitamin K epoxide reductase.

Wang X, Dutton RJ, Beckwith J, Boyd D.

Antioxid Redox Signal. 2011 Apr 15;14(8):1413-20. doi: 10.1089/ars.2010.3558. Epub 2011 Feb 18.

24.

Structure of a bacterial homologue of vitamin K epoxide reductase.

Li W, Schulman S, Dutton RJ, Boyd D, Beckwith J, Rapoport TA.

Nature. 2010 Jan 28;463(7280):507-12. doi: 10.1038/nature08720.

25.

Inhibition of bacterial disulfide bond formation by the anticoagulant warfarin.

Dutton RJ, Wayman A, Wei JR, Rubin EJ, Beckwith J, Boyd D.

Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):297-301. doi: 10.1073/pnas.0912952107. Epub 2009 Dec 15.

26.

Lessons learned from a binational survey to examine women's health status in the US-Mexico border region.

Delgado E, Castrucci BC, Fonseca V, Dutton RJ, Berrahou F.

Prev Chronic Dis. 2008 Oct;5(4):A107. Epub 2008 Sep 15. No abstract available.

27.

Bacterial species exhibit diversity in their mechanisms and capacity for protein disulfide bond formation.

Dutton RJ, Boyd D, Berkmen M, Beckwith J.

Proc Natl Acad Sci U S A. 2008 Aug 19;105(33):11933-8. doi: 10.1073/pnas.0804621105. Epub 2008 Aug 11.

28.

Insight into disulfide bond catalysis in Chlamydia from the structure and function of DsbH, a novel oxidoreductase.

Mac TT, von Hacht A, Hung KC, Dutton RJ, Boyd D, Bardwell JC, Ulmer TS.

J Biol Chem. 2008 Jan 11;283(2):824-32. Epub 2007 Nov 14.

29.

Risk behaviors by ethnicity and Texas-Mexico border residence.

Sanderson M, Fernandez ME, Dutton RJ, Ponder A, Sosa D, Peltz G.

Ethn Dis. 2006 Spring;16(2):514-20.

PMID:
17682257
30.

The Calyptogena magnifica chemoautotrophic symbiont genome.

Newton IL, Woyke T, Auchtung TA, Dilly GF, Dutton RJ, Fisher MC, Fontanez KM, Lau E, Stewart FJ, Richardson PM, Barry KW, Saunders E, Detter JC, Wu D, Eisen JA, Cavanaugh CM.

Science. 2007 Feb 16;315(5814):998-1000.

31.
33.

The conserved flaF gene has a critical role in coupling flagellin translation and assembly in Caulobacter crescentus.

Llewellyn M, Dutton RJ, Easter J, O'donnol D, Gober JW.

Mol Microbiol. 2005 Aug;57(4):1127-42.

34.

Mercury poisoning associated with a Mexican beauty cream.

Weldon MM, Smolinski MS, Maroufi A, Hasty BW, Gilliss DL, Boulanger LL, Balluz LS, Dutton RJ.

West J Med. 2000 Jul;173(1):15-8; discussion 19.

35.

Effect of environmental toxicants on enzyme biosynthesis: a comparison of beta-galactosidase, alpha-glucosidase and tryptophanase.

Dutton RJ, Bitton G, Koopman B, Agami O.

Arch Environ Contam Toxicol. 1990 May-Jun;19(3):395-8.

PMID:
2112903
36.

Effect of temperature on the chronic toxicity of Hydrothol-191 to the fathead minnow (Pimephales promelas).

Keller AE, Dutton RJ, Crisman TL.

Bull Environ Contam Toxicol. 1988 Nov;41(5):770-5. No abstract available.

PMID:
3233377
37.

Chronic toxicity of Hydrothol-191 to Ceriodaphnia dubia at 25 and 15 degrees C.

Keller AE, Dutton RJ, Bitton G, Crisman TL.

Bull Environ Contam Toxicol. 1988 Aug;41(2):233-40. No abstract available.

PMID:
3207907
38.

Malachite green-INT (MINT) method for determining active bacteria in sewage.

Dutton RJ, Bitton G, Koopman B.

Appl Environ Microbiol. 1983 Dec;46(6):1263-7.

39.

New rapid technique for counting microorganisms directly on membrane filters.

Bitton G, Dutton RJ, Foran JA.

Stain Technol. 1983 Nov;58(6):343-6.

PMID:
6206613

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