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Male and female bees show large differences in floral preference.

Roswell M, Dushoff J, Winfree R.

PLoS One. 2019 Apr 24;14(4):e0214909. doi: 10.1371/journal.pone.0214909. eCollection 2019. Erratum in: PLoS One. 2019 Jun 4;14(6):e0217714.


Traditional Male Circumcision is Associated with Sexual Risk Behaviors in Sub-Saharan Countries Prioritized for Male Circumcision.

Shi C, Li M, Dushoff J.

AIDS Behav. 2019 Apr 6. doi: 10.1007/s10461-019-02473-0. [Epub ahead of print]


Relatedness of the incidence decay with exponential adjustment (IDEA) model, "Farr's law" and SIR compartmental difference equation models.

Santillana M, Tuite A, Nasserie T, Fine P, Champredon D, Chindelevitch L, Dushoff J, Fisman D.

Infect Dis Model. 2018 Mar 9;3:1-12. doi: 10.1016/j.idm.2018.03.001. eCollection 2018.


A practical generation-interval-based approach to inferring the strength of epidemics from their speed.

Park SW, Champredon D, Weitz JS, Dushoff J.

Epidemics. 2019 Jun;27:12-18. doi: 10.1016/j.epidem.2018.12.002. Epub 2019 Jan 10.


Correction to 'Speciation over the edge: gene flow among non-human primate species across a formidable biogeographic barrier'.

Evans BJ, Tosi AJ, Zeng K, Dushoff J, Corvelo A, Melnick DJ.

R Soc Open Sci. 2018 Jun 13;5(6):180736. doi: 10.1098/rsos.180736. eCollection 2018 Jun.


Human ectoparasite transmission of the plague during the Second Pandemic is only weakly supported by proposed mathematical models.

Park SW, Dushoff J, Earn DJD, Poinar H, Bolker BM.

Proc Natl Acad Sci U S A. 2018 Aug 21;115(34):E7892-E7893. doi: 10.1073/pnas.1809775115. Epub 2018 Aug 3. No abstract available.


Fitting mechanistic epidemic models to data: A comparison of simple Markov chain Monte Carlo approaches.

Li M, Dushoff J, Bolker BM.

Stat Methods Med Res. 2018 Jul;27(7):1956-1967. doi: 10.1177/0962280217747054.


Couple serostatus patterns in sub-Saharan Africa illuminate the relative roles of transmission rates and sexual network characteristics in HIV epidemiology.

Bellan SE, Champredon D, Dushoff J, Meyers LA.

Sci Rep. 2018 Apr 27;8(1):6675. doi: 10.1038/s41598-018-24249-7.


Out-of-Pocket Expenditures, Indirect Costs and Health-Related Quality of Life of Patients with Pulmonary Tuberculosis in Thailand.

Tanvejsilp P, Loeb M, Dushoff J, Xie F.

Pharmacoecon Open. 2018 Sep;2(3):281-296. doi: 10.1007/s41669-017-0057-9.


Healthcare Resource Uses and Out-of-Pocket Expenses Associated with Pulmonary TB Treatment in Thailand.

Tanvejsilp P, Loeb M, Dushoff J, Xie F.

Pharmacoecon Open. 2018 Sep;2(3):297-308. doi: 10.1007/s41669-017-0053-0.


Stochastic simulation of multiscale complex systems with PISKaS: A rule-based approach.

Perez-Acle T, Fuenzalida I, Martin AJM, Santibañez R, Avaria R, Bernardin A, Bustos AM, Garrido D, Dushoff J, Liu JH.

Biochem Biophys Res Commun. 2018 Mar 29;498(2):342-351. doi: 10.1016/j.bbrc.2017.11.138. Epub 2017 Nov 21.


On the origin of obesity: identifying the biological, environmental and cultural drivers of genetic risk among human populations.

Qasim A, Turcotte M, de Souza RJ, Samaan MC, Champredon D, Dushoff J, Speakman JR, Meyre D.

Obes Rev. 2018 Feb;19(2):121-149. doi: 10.1111/obr.12625. Epub 2017 Nov 16. Review.


Speciation over the edge: gene flow among non-human primate species across a formidable biogeographic barrier.

Evans BJ, Tosi AJ, Zeng K, Dushoff J, Corvelo A, Melnick DJ.

R Soc Open Sci. 2017 Oct 18;4(10):170351. doi: 10.1098/rsos.170351. eCollection 2017 Oct. Erratum in: R Soc Open Sci. 2018 Jun 13;5(6):180736.


Patterns of influenza vaccination coverage in the United States from 2009 to 2015.

Chiu APY, Dushoff J, Yu D, He D.

Int J Infect Dis. 2017 Dec;65:122-127. doi: 10.1016/j.ijid.2017.10.004. Epub 2017 Oct 16.


Lysis, lysogeny and virus-microbe ratios.

Weitz JS, Beckett SJ, Brum JR, Cael BB, Dushoff J.

Nature. 2017 Sep 20;549(7672):E1-E3. doi: 10.1038/nature23295. No abstract available.


Kaiso is highly expressed in TNBC tissues of women of African ancestry compared to Caucasian women.

Bassey-Archibong BI, Hercules SM, Rayner LGA, Skeete DHA, Smith Connell SP, Brain I, Daramola A, Banjo AAF, Byun JS, Gardner K, Dushoff J, Daniel JM.

Cancer Causes Control. 2017 Nov;28(11):1295-1304. doi: 10.1007/s10552-017-0955-2. Epub 2017 Sep 8.


Eco-Evolutionary Theory and Insect Outbreaks.

Páez DJ, Dukic V, Dushoff J, Fleming-Davies A, Dwyer G.

Am Nat. 2017 Jun;189(6):616-629. doi: 10.1086/691537. Epub 2017 Apr 5.


Evidence that promotion of male circumcision did not lead to sexual risk compensation in prioritized Sub-Saharan countries.

Shi CF, Li M, Dushoff J.

PLoS One. 2017 Apr 25;12(4):e0175928. doi: 10.1371/journal.pone.0175928. eCollection 2017.


Two approaches to forecast Ebola synthetic epidemics.

Champredon D, Li M, Bolker BM, Dushoff J.

Epidemics. 2018 Mar;22:36-42. doi: 10.1016/j.epidem.2017.02.011. Epub 2017 Feb 24.


Role of pharmaceutical care for self-administered pulmonary tuberculosis treatment in Thailand.

Tanvejsilp P, Pullenayegum E, Loeb M, Dushoff J, Xie F.

J Clin Pharm Ther. 2017 Jun;42(3):337-344. doi: 10.1111/jcpt.12519. Epub 2017 Mar 19.


A double-edged sword: does highly active antiretroviral therapy contribute to syphilis incidence by impairing immunity to Treponema pallidum?

Rekart ML, Ndifon W, Brunham RC, Dushoff J, Park SW, Rawat S, Cameron CE.

Sex Transm Infect. 2017 Aug;93(5):374-378. doi: 10.1136/sextrans-2016-052870. Epub 2017 Jan 16. Review.


Stochasticity and the limits to confidence when estimating R0 of Ebola and other emerging infectious diseases.

Taylor BP, Dushoff J, Weitz JS.

J Theor Biol. 2016 Nov 7;408:145-54. doi: 10.1016/j.jtbi.2016.08.016. Epub 2016 Aug 11.


Epidemiological impact of a syphilis vaccine: a simulation study.

Champredon D, Cameron CE, Smieja M, Dushoff J.

Epidemiol Infect. 2016 Nov;144(15):3244-3252. Epub 2016 Aug 1.


Reevaluating Cumulative HIV-1 Viral Load as a Prognostic Predictor: Predicting Opportunistic Infection Incidence and Mortality in a Ugandan Cohort.

Sempa JB, Dushoff J, Daniels MJ, Castelnuovo B, Kiragga AN, Nieuwoudt M, Bellan SE.

Am J Epidemiol. 2016 Jul 1;184(1):67-77. doi: 10.1093/aje/kwv303. Epub 2016 May 4.


The Hayflick Limit May Determine the Effective Clonal Diversity of Naive T Cells.

Ndifon W, Dushoff J.

J Immunol. 2016 Jun 15;196(12):4999-5004. doi: 10.4049/jimmunol.1502343. Epub 2016 May 13.


The risk of incomplete personal protection coverage in vector-borne disease.

Miller E, Dushoff J, Huppert A.

J R Soc Interface. 2016 Feb;13(115):20150666. doi: 10.1098/rsif.2015.0666.


Estimating finite-population reproductive numbers in heterogeneous populations.

Keegan LT, Dushoff J.

J Theor Biol. 2016 May 21;397:1-12. doi: 10.1016/j.jtbi.2016.01.022. Epub 2016 Feb 15.


Intrinsic and realized generation intervals in infectious-disease transmission.

Champredon D, Dushoff J.

Proc Biol Sci. 2015 Dec 22;282(1821):20152026. doi: 10.1098/rspb.2015.2026.


Evaluating Ebola vaccine trials: insights from simulation.

Pulliam JRC, Bellan SE, Gambhir M, Meyers LA, Dushoff J.

Lancet Infect Dis. 2015 Oct;15(10):1134. doi: 10.1016/S1473-3099(15)00303-5. Epub 2015 Sep 20. No abstract available.


Modeling the effect of HIV coinfection on clearance and sustained virologic response during treatment for hepatitis C virus.

Birger R, Kouyos R, Dushoff J, Grenfell B.

Epidemics. 2015 Sep;12:1-10. doi: 10.1016/j.epidem.2015.04.001. Epub 2015 Apr 27.


The effect of sexually transmitted co-infections on HIV viral load amongst individuals on antiretroviral therapy: a systematic review and meta-analysis.

Champredon D, Bellan SE, Delva W, Hunt S, Shi CF, Smieja M, Dushoff J.

BMC Infect Dis. 2015 Jun 30;15:249. doi: 10.1186/s12879-015-0961-5. Review.


Correction: Estimating the global burden of endemic canine rabies.

Hampson K, Coudeville L, Lembo T, Sambo M, Kieffer A, Attlan M, Barrat J, Blanton JD, Briggs DJ, Cleaveland S, Costa P, Freuling CM, Hiby E, Knopf L, Leanes F, Meslin FX, Metlin A, Miranda ME, Müller T, Nel LH, Recuenco S, Rupprecht CE, Schumacher C, Taylor L, Antonio M, Vigilato N, Zinsstag J, Dushoff J; Global Alliance for Rabies Control Partners for Rabies Prevention.

PLoS Negl Trop Dis. 2015 May 11;9(5):e0003786. doi: 10.1371/journal.pntd.0003786. eCollection 2015 May. No abstract available.


Statistical power and validity of Ebola vaccine trials in Sierra Leone: a simulation study of trial design and analysis.

Bellan SE, Pulliam JR, Pearson CA, Champredon D, Fox SJ, Skrip L, Galvani AP, Gambhir M, Lopman BA, Porco TC, Meyers LA, Dushoff J.

Lancet Infect Dis. 2015 Jun;15(6):703-10. doi: 10.1016/S1473-3099(15)70139-8. Epub 2015 Apr 14.


Estimating the global burden of endemic canine rabies.

Hampson K, Coudeville L, Lembo T, Sambo M, Kieffer A, Attlan M, Barrat J, Blanton JD, Briggs DJ, Cleaveland S, Costa P, Freuling CM, Hiby E, Knopf L, Leanes F, Meslin FX, Metlin A, Miranda ME, Müller T, Nel LH, Recuenco S, Rupprecht CE, Schumacher C, Taylor L, Vigilato MA, Zinsstag J, Dushoff J; Global Alliance for Rabies Control Partners for Rabies Prevention.

PLoS Negl Trop Dis. 2015 Apr 16;9(4):e0003709. doi: 10.1371/journal.pntd.0003709. eCollection 2015 Apr. Erratum in: PLoS Negl Trop Dis. 2015 May;9(5):e0003786.


Reassessment of HIV-1 acute phase infectivity: accounting for heterogeneity and study design with simulated cohorts.

Bellan SE, Dushoff J, Galvani AP, Meyers LA.

PLoS Med. 2015 Mar 17;12(3):e1001801. doi: 10.1371/journal.pmed.1001801. eCollection 2015 Mar.


Modeling post-death transmission of Ebola: challenges for inference and opportunities for control.

Weitz JS, Dushoff J.

Sci Rep. 2015 Mar 4;5:8751. doi: 10.1038/srep08751.


Ebola virus vaccine trials: the ethical mandate for a therapeutic safety net.

Bellan SE, Pulliam JR, Dushoff J, Meyers LA.

BMJ. 2014 Dec 10;349:g7518. doi: 10.1136/bmj.g7518. No abstract available.


Ebola control: effect of asymptomatic infection and acquired immunity.

Bellan SE, Pulliam JR, Dushoff J, Meyers LA.

Lancet. 2014 Oct 25;384(9953):1499-500. doi: 10.1016/S0140-6736(14)61839-0. Epub 2014 Oct 15. No abstract available.


Modelling of OGTT curve identifies 1 h plasma glucose level as a strong predictor of incident type 2 diabetes: results from two prospective cohorts.

Alyass A, Almgren P, Akerlund M, Dushoff J, Isomaa B, Nilsson P, Tuomi T, Lyssenko V, Groop L, Meyre D.

Diabetologia. 2015 Jan;58(1):87-97. doi: 10.1007/s00125-014-3390-x. Epub 2014 Oct 8.


Analytic calculation of finite-population reproductive numbers for direct- and vector-transmitted diseases with homogeneous mixing.

Keegan L, Dushoff J.

Bull Math Biol. 2014 May;76(5):1143-54. doi: 10.1007/s11538-014-9950-x. Epub 2014 Apr 23.


Species abundance, not diet breadth, drives the persistence of the most linked pollinators as plant-pollinator networks disassemble.

Winfree R, Williams NM, Dushoff J, Kremen C.

Am Nat. 2014 May;183(5):600-11. doi: 10.1086/675716. Epub 2014 Mar 28.


HIV sexual transmission is predominantly driven by single individuals rather than discordant couples: a model-based approach.

Champredon D, Bellan S, Dushoff J.

PLoS One. 2013 Dec 20;8(12):e82906. doi: 10.1371/journal.pone.0082906. eCollection 2013.


Estimating initial epidemic growth rates.

Ma J, Dushoff J, Bolker BM, Earn DJ.

Bull Math Biol. 2014 Jan;76(1):245-60. doi: 10.1007/s11538-013-9918-2. Epub 2013 Nov 23.


Re: "The 'case-chaos study' L adjunct or alternative to conventional case-control study methodology".

Pulliam JR, Dushoff J.

Am J Epidemiol. 2014 Jan 15;179(2):261-2. doi: 10.1093/aje/kwt242. Epub 2013 Oct 14. No abstract available.


Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm.

Bartram AK, Jiang X, Lynch MD, Masella AP, Nicol GW, Dushoff J, Neufeld JD.

FEMS Microbiol Ecol. 2014 Feb;87(2):403-15. doi: 10.1111/1574-6941.12231. Epub 2013 Oct 25.


Patterns of spread of influenza A in Canada.

He D, Dushoff J, Eftimie R, Earn DJ.

Proc Biol Sci. 2013 Sep 11;280(1770):20131174. doi: 10.1098/rspb.2013.1174. Print 2013 Nov 7.


Population-level effects of clinical immunity to malaria.

Keegan LT, Dushoff J.

BMC Infect Dis. 2013 Sep 11;13:428. doi: 10.1186/1471-2334-13-428.


Designing programs for eliminating canine rabies from islands: Bali, Indonesia as a case study.

Townsend SE, Sumantra IP, Pudjiatmoko, Bagus GN, Brum E, Cleaveland S, Crafter S, Dewi AP, Dharma DM, Dushoff J, Girardi J, Gunata IK, Hiby EF, Kalalo C, Knobel DL, Mardiana IW, Putra AA, Schoonman L, Scott-Orr H, Shand M, Sukanadi IW, Suseno PP, Haydon DT, Hampson K.

PLoS Negl Trop Dis. 2013 Aug 22;7(8):e2372. doi: 10.1371/journal.pntd.0002372. eCollection 2013.


Effects of mixing in threshold models of social behavior.

Akhmetzhanov AR, Worden L, Dushoff J.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Jul;88(1):012816. Epub 2013 Jul 25.


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