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Items: 1 to 50 of 63

1.

Extrapolating weak selection in evolutionary games.

Wang Z, Durrett R.

J Math Biol. 2019 Jan;78(1-2):135-154. doi: 10.1007/s00285-018-1270-6. Epub 2018 Jul 28.

PMID:
30056505
2.

Plasma cell output from germinal centers is regulated by signals from Tfh and stromal cells.

Zhang Y, Tech L, George LA, Acs A, Durrett RE, Hess H, Walker LSK, Tarlinton DM, Fletcher AL, Hauser AE, Toellner KM.

J Exp Med. 2018 Apr 2;215(4):1227-1243. doi: 10.1084/jem.20160832. Epub 2018 Mar 16.

3.

Persistence and reversal of plasmid-mediated antibiotic resistance.

Lopatkin AJ, Meredith HR, Srimani JK, Pfeiffer C, Durrett R, You L.

Nat Commun. 2017 Nov 22;8(1):1689. doi: 10.1038/s41467-017-01532-1.

4.

Temporal profiles of avalanches on networks.

Gleeson JP, Durrett R.

Nat Commun. 2017 Oct 31;8(1):1227. doi: 10.1038/s41467-017-01212-0.

5.

Role of stem-cell divisions in cancer risk.

Tomasetti C, Durrett R, Kimmel M, Lambert A, Parmigiani G, Zauber A, Vogelstein B.

Nature. 2017 Aug 9;548(7666):E13-E14. doi: 10.1038/nature23302. No abstract available.

PMID:
28796214
6.

Spatial evolutionary games with weak selection.

Nanda M, Durrett R.

Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):6046-6051. doi: 10.1073/pnas.1620852114. Epub 2017 May 22.

7.

Ordinary Differential Equation Models for Adoptive Immunotherapy.

Talkington A, Dantoin C, Durrett R.

Bull Math Biol. 2018 May;80(5):1059-1083. doi: 10.1007/s11538-017-0263-8. Epub 2017 Apr 5.

PMID:
28382423
8.

Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius.

Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J, Afshinnekoo E, Lam ET, Hastie AR, Chan S, Cao H, Saghbini M, Kentsis A, Planet PJ, Kholodovych V, Tessler M, Baker R, DeSalle R, Sorkin LN, Kolokotronis SO, Siddall ME, Amato G, Mason CE.

Nat Commun. 2016 Feb 2;7:10164. doi: 10.1038/ncomms10164.

9.

Outcomes of Active Surveillance for Ductal Carcinoma in Situ: A Computational Risk Analysis.

Ryser MD, Worni M, Turner EL, Marks JR, Durrett R, Hwang ES.

J Natl Cancer Inst. 2015 Dec 17;108(5). pii: djv372. doi: 10.1093/jnci/djv372. Print 2016 May.

10.

Estimating Tumor Growth Rates In Vivo.

Talkington A, Durrett R.

Bull Math Biol. 2015 Oct;77(10):1934-54.

11.

Spatial Moran Models I. Stochastic Tunneling in the Neutral Case.

Durrett R, Moseley S.

Ann Appl Probab. 2015 Feb;25(1):104-115.

12.

Spatial Moran models, II: cancer initiation in spatially structured tissue.

Durrett R, Foo J, Leder K.

J Math Biol. 2016 Apr;72(5):1369-400. doi: 10.1007/s00285-015-0912-1. Epub 2015 Jul 1.

13.

Assembly and diploid architecture of an individual human genome via single-molecule technologies.

Pendleton M, Sebra R, Pang AW, Ummat A, Franzen O, Rausch T, St├╝tz AM, Stedman W, Anantharaman T, Hastie A, Dai H, Fritz MH, Cao H, Cohain A, Deikus G, Durrett RE, Blanchard SC, Altman R, Chin CS, Guo Y, Paxinos EE, Korbel JO, Darnell RB, McCombie WR, Kwok PY, Mason CE, Schadt EE, Bashir A.

Nat Methods. 2015 Aug;12(8):780-6. doi: 10.1038/nmeth.3454. Epub 2015 Jun 29.

14.

HPV clearance and the neglected role of stochasticity.

Ryser MD, Myers ER, Durrett R.

PLoS Comput Biol. 2015 Mar 13;11(3):e1004113. doi: 10.1371/journal.pcbi.1004113. eCollection 2015 Mar.

15.

Exact solution for a metapopulation version of Schelling's model.

Durrett R, Zhang Y.

Proc Natl Acad Sci U S A. 2014 Sep 30;111(39):14036-41. doi: 10.1073/pnas.1414915111. Epub 2014 Sep 15.

16.

Chemical evolutionary games.

Aristotelous AC, Durrett R.

Theor Popul Biol. 2014 May;93:1-13. doi: 10.1016/j.tpb.2014.02.001. Epub 2014 Feb 7.

17.

Multiopinion coevolving voter model with infinitely many phase transitions.

Shi F, Mucha PJ, Durrett R.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Dec;88(6):062818. Epub 2013 Dec 30.

18.

Fingering in Stochastic Growth Models.

Aristotelous AC, Durrett R.

Exp Math. 2014;23(4):465-474. Epub 2014 Nov 14.

19.

Phase transitions in the quadratic contact process on complex networks.

Varghese C, Durrett R.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Jun;87(6):062819. Epub 2013 Jun 27.

PMID:
23848741
20.

Genome Sequence of the Bacillus subtilis Biofilm-Forming Transformable Strain PS216.

Durrett R, Miras M, Mirouze N, Narechania A, Mandic-Mulec I, Dubnau D.

Genome Announc. 2013 Jun 20;1(3). pii: e00288-13. doi: 10.1128/genomeA.00288-13.

21.
22.

Two methods for full-length RNA sequencing for low quantities of cells and single cells.

Pan X, Durrett RE, Zhu H, Tanaka Y, Li Y, Zi X, Marjani SL, Euskirchen G, Ma C, Lamotte RH, Park IH, Snyder MP, Mason CE, Weissman SM.

Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):594-9. doi: 10.1073/pnas.1217322109. Epub 2012 Dec 24.

23.

A branching process model of ovarian cancer.

Danesh K, Durrett R, Havrilesky LJ, Myers E.

J Theor Biol. 2012 Dec 7;314:10-5. doi: 10.1016/j.jtbi.2012.08.025. Epub 2012 Aug 30.

24.

Graph fission in an evolving voter model.

Durrett R, Gleeson JP, Lloyd AL, Mucha PJ, Shi F, Sivakoff D, Socolar JE, Varghese C.

Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3682-7. doi: 10.1073/pnas.1200709109. Epub 2012 Feb 21.

25.

QnAs with Richard T. Durrett.

Durrett RT.

Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2687. doi: 10.1073/pnas.1121488109. Epub 2012 Jan 17. No abstract available.

26.

Evolution of dispersal distance.

Durrett R, Remenik D.

J Math Biol. 2012 Mar;64(4):657-66. doi: 10.1007/s00285-011-0444-2. Epub 2011 Jun 17.

PMID:
21681566
27.

Intratumor heterogeneity in evolutionary models of tumor progression.

Durrett R, Foo J, Leder K, Mayberry J, Michor F.

Genetics. 2011 Jun;188(2):461-77. doi: 10.1534/genetics.110.125724. Epub 2011 Mar 15.

28.

Evolutionary dynamics of tumor progression with random fitness values.

Durrett R, Foo J, Leder K, Mayberry J, Michor F.

Theor Popul Biol. 2010 Aug;78(1):54-66. doi: 10.1016/j.tpb.2010.05.001. Epub 2010 May 19.

29.

Some features of the spread of epidemics and information on a random graph.

Durrett R.

Proc Natl Acad Sci U S A. 2010 Mar 9;107(10):4491-8. doi: 10.1073/pnas.0914402107. Epub 2010 Feb 18.

30.

Evolution of resistance and progression to disease during clonal expansion of cancer.

Durrett R, Moseley S.

Theor Popul Biol. 2010 Feb;77(1):42-8. doi: 10.1016/j.tpb.2009.10.008. Epub 2009 Nov 5.

PMID:
19896491
31.

A COSII genetic map of the pepper genome provides a detailed picture of synteny with tomato and new insights into recent chromosome evolution in the genus Capsicum.

Wu F, Eannetta NT, Xu Y, Durrett R, Mazourek M, Jahn MM, Tanksley SD.

Theor Appl Genet. 2009 May;118(7):1279-93. doi: 10.1007/s00122-009-0980-y. Epub 2009 Feb 20.

PMID:
19229514
32.

Waiting for two mutations: with applications to regulatory sequence evolution and the limits of Darwinian evolution.

Durrett R, Schmidt D.

Genetics. 2008 Nov;180(3):1501-9. doi: 10.1534/genetics.107.082610. Epub 2008 Sep 14.

33.

Population genetics of polymorphism and divergence under fluctuating selection.

Huerta-Sanchez E, Durrett R, Bustamante CD.

Genetics. 2008 Jan;178(1):325-37. Epub 2007 Oct 18.

34.

Simple models of genomic variation in human SNP density.

Sainudiin R, Clark AG, Durrett RT.

BMC Genomics. 2007 Jun 6;8:146.

35.
36.

Dependence of paracentric inversion rate on tract length.

York TL, Durrett R, Nielsen R.

BMC Bioinformatics. 2007 Apr 3;8:115.

37.

Wagner's canalization model.

Huerta-Sanchez E, Durrett R.

Theor Popul Biol. 2007 Mar;71(2):121-30. Epub 2006 Nov 3.

PMID:
17178139
38.

Bayesian and maximum likelihood estimation of genetic maps.

York TL, Durrett RT, Tanksley S, Nielsen R.

Genet Res. 2005 Apr;85(2):159-68.

PMID:
16174334
39.

Microsatellite mutation models: insights from a comparison of humans and chimpanzees.

Sainudiin R, Durrett RT, Aquadro CF, Nielsen R.

Genetics. 2004 Sep;168(1):383-95.

40.

Adaptive evolution drives the diversification of zinc-finger binding domains.

Schmidt D, Durrett R.

Mol Biol Evol. 2004 Dec;21(12):2326-39. Epub 2004 Sep 1.

PMID:
15342798
41.

Approximating selective sweeps.

Durrett R, Schweinsberg J.

Theor Popul Biol. 2004 Sep;66(2):129-38.

PMID:
15302222
42.

Subfunctionalization: How often does it occur? How long does it take?

Ward R, Durrett R.

Theor Popul Biol. 2004 Sep;66(2):93-100.

PMID:
15302219
43.

Bayesian estimation of genomic distance.

Durrett R, Nielsen R, York TL.

Genetics. 2004 Jan;166(1):621-9.

44.

Dinucleotide repeats in the Drosophila and human genomes have complex, length-dependent mutation processes.

Calabrese P, Durrett R.

Mol Biol Evol. 2003 May;20(5):715-25. Epub 2003 Apr 2.

PMID:
12679531
45.

Bayesian estimation of the number of inversions in the history of two chromosomes.

York TL, Durrett R, Nielsen R.

J Comput Biol. 2002;9(6):805-18.

PMID:
12614548
46.
47.

Competition and species packing in patchy environments.

Buttel LA, Durrett R, Levin SA.

Theor Popul Biol. 2002 May;61(3):265-76.

PMID:
12027613
48.

A simple formula useful for positional cloning.

Durrett RT, Chen KY, Tanksley SD.

Genetics. 2002 Jan;160(1):353-5.

49.

Exponential distance statistics to detect the effects of population subdivision.

Sundell NM, Durrett RT.

Theor Popul Biol. 2001 Sep;60(2):107-16.

PMID:
11703101
50.

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