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Items: 16

1.

Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits.

Gleeson P, Cantarelli M, Marin B, Quintana A, Earnshaw M, Sadeh S, Piasini E, Birgiolas J, Cannon RC, Cayco-Gajic NA, Crook S, Davison AP, Dura-Bernal S, Ecker A, Hines ML, Idili G, Lanore F, Larson SD, Lytton WW, Majumdar A, McDougal RA, Sivagnanam S, Solinas S, Stanislovas R, van Albada SJ, van Geit W, Silver RA.

Neuron. 2019 Aug 7;103(3):395-411.e5. doi: 10.1016/j.neuron.2019.05.019. Epub 2019 Jun 11.

2.

NetPyNE, a tool for data-driven multiscale modeling of brain circuits.

Dura-Bernal S, Suter BA, Gleeson P, Cantarelli M, Quintana A, Rodriguez F, Kedziora DJ, Chadderdon GL, Kerr CC, Neymotin SA, McDougal RA, Hines M, Shepherd GM, Lytton WW.

Elife. 2019 Apr 26;8. pii: e44494. doi: 10.7554/eLife.44494.

3.

Geppetto: a reusable modular open platform for exploring neuroscience data and models.

Cantarelli M, Marin B, Quintana A, Earnshaw M, Court R, Gleeson P, Dura-Bernal S, Silver RA, Idili G.

Philos Trans R Soc Lond B Biol Sci. 2018 Sep 10;373(1758). pii: 20170380. doi: 10.1098/rstb.2017.0380.

4.

Optimization by Adaptive Stochastic Descent.

Kerr CC, Dura-Bernal S, Smolinski TG, Chadderdon GL, Wilson DP.

PLoS One. 2018 Mar 16;13(3):e0192944. doi: 10.1371/journal.pone.0192944. eCollection 2018.

5.

Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis.

Dura-Bernal S, Neymotin SA, Kerr CC, Sivagnanam S, Majumdar A, Francis JT, Lytton WW.

IBM J Res Dev. 2017 Mar-May;61(2-3):6.1-6.14. doi: 10.1147/JRD.2017.2656758. Epub 2017 May 23.

6.

Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.

Neymotin SA, Suter BA, Dura-Bernal S, Shepherd GM, Migliore M, Lytton WW.

J Neurophysiol. 2017 Jan 1;117(1):148-162. doi: 10.1152/jn.00570.2016. Epub 2016 Oct 19.

7.

Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON.

Lytton WW, Seidenstein AH, Dura-Bernal S, McDougal RA, Schürmann F, Hines ML.

Neural Comput. 2016 Oct;28(10):2063-90. doi: 10.1162/NECO_a_00876. Epub 2016 Aug 24.

8.

Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex.

Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW.

Front Pharmacol. 2016 Jun 14;7:157. doi: 10.3389/fphar.2016.00157. eCollection 2016.

9.

Computer modeling for pharmacological treatments for dystonia.

Neymotin SA, Dura-Bernal S, Moreno H, Lytton WW.

Drug Discov Today Dis Models. 2016 Spring;19:51-57. doi: 10.1016/j.ddmod.2017.02.003. Epub 2017 Mar 31.

10.

Restoring Behavior via Inverse Neurocontroller in a Lesioned Cortical Spiking Model Driving a Virtual Arm.

Dura-Bernal S, Li K, Neymotin SA, Francis JT, Principe JC, Lytton WW.

Front Neurosci. 2016 Feb 9;10:28. doi: 10.3389/fnins.2016.00028. eCollection 2016.

11.

Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models.

Lee G, Matsunaga A, Dura-Bernal S, Zhang W, Lytton WW, Francis JT, Fortes JA.

J Comput Surg. 2014 Nov;3(12):1-23.

12.

Cortical Spiking Network Interfaced with Virtual Musculoskeletal Arm and Robotic Arm.

Dura-Bernal S, Zhou X, Neymotin SA, Przekwas A, Francis JT, Lytton WW.

Front Neurorobot. 2015 Nov 25;9:13. doi: 10.3389/fnbot.2015.00013. eCollection 2015.

13.

Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm.

Dura-Bernal S, Chadderdon GL, Neymotin SA, Francis JT, Lytton WW.

Pattern Recognit Lett. 2014 Jan 15;36:204-212.

14.

Multimodal integration of micro-Doppler sonar and auditory signals for behavior classification with convolutional networks.

Dura-Bernal S, Garreau G, Georgiou J, Andreou AG, Denham SL, Wennekers T.

Int J Neural Syst. 2013 Oct;23(5):1350021. doi: 10.1142/S0129065713500214. Epub 2013 Jul 23.

PMID:
23924412
15.

Top-down feedback in an HMAX-like cortical model of object perception based on hierarchical Bayesian networks and belief propagation.

Dura-Bernal S, Wennekers T, Denham SL.

PLoS One. 2012;7(11):e48216. doi: 10.1371/journal.pone.0048216. Epub 2012 Nov 5.

16.

The role of feedback in a hierarchical model of object perception.

Dura-Bernal S, Wennekers T, Denham SL.

Adv Exp Med Biol. 2011;718:165-79. doi: 10.1007/978-1-4614-0164-3_14.

PMID:
21744218

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