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A microbiota-generated bile salt induces biofilm formation in Clostridium difficile.

Dubois T, Tremblay YDN, Hamiot A, Martin-Verstraete I, Deschamps J, Monot M, Briandet R, Dupuy B.

NPJ Biofilms Microbiomes. 2019 May 9;5:14. doi: 10.1038/s41522-019-0087-4. eCollection 2019.


The Ser/Thr Kinase PrkC Participates in Cell Wall Homeostasis and Antimicrobial Resistance in Clostridium difficile.

Cuenot E, Garcia-Garcia T, Douche T, Gorgette O, Courtin P, Denis-Quanquin S, Hoys S, Tremblay YDN, Matondo M, Chapot-Chartier MP, Janoir C, Dupuy B, Candela T, Martin-Verstraete I.

Infect Immun. 2019 Jul 23;87(8). pii: e00005-19. doi: 10.1128/IAI.00005-19. Print 2019 Aug.


The σB signalling activation pathway in the enteropathogen Clostridioides difficile.

Kint N, Alves Feliciano C, Hamiot A, Denic M, Dupuy B, Martin-Verstraete I.

Environ Microbiol. 2019 Aug;21(8):2852-2870. doi: 10.1111/1462-2920.14642. Epub 2019 May 15.


Role of the global regulator Rex in control of NAD+ -regeneration in Clostridioides (Clostridium) difficile.

Bouillaut L, Dubois T, Francis MB, Daou N, Monot M, Sorg JA, Sonenshein AL, Dupuy B.

Mol Microbiol. 2019 Jun;111(6):1671-1688. doi: 10.1111/mmi.14245. Epub 2019 Apr 2.


CotL, a new morphogenetic spore coat protein of Clostridium difficile.

Alves Feliciano C, Douché T, Giai Gianetto Q, Matondo M, Martin-Verstraete I, Dupuy B.

Environ Microbiol. 2019 Mar;21(3):984-1003. doi: 10.1111/1462-2920.14505. Epub 2019 Feb 21.


Drug-taking in a socio-sexual context enhances vulnerability for addiction in male rats.

Kuiper LB, Beloate LN, Dupuy BM, Coolen LM.

Neuropsychopharmacology. 2019 Feb;44(3):503-513. doi: 10.1038/s41386-018-0235-1. Epub 2018 Oct 6.


Clostridium difficile Biofilm: Remodeling Metabolism and Cell Surface to Build a Sparse and Heterogeneously Aggregated Architecture.

Poquet I, Saujet L, Canette A, Monot M, Mihajlovic J, Ghigo JM, Soutourina O, Briandet R, Martin-Verstraete I, Dupuy B.

Front Microbiol. 2018 Sep 12;9:2084. doi: 10.3389/fmicb.2018.02084. eCollection 2018.


A microfluidic fluidized bed to capture, amplify and detect bacteria from raw samples.

Alexandre L, Pereiro I, Bendali A, Tabnaoui S, Srbova J, Bilkova Z, Deegan S, Joshi L, Viovy JL, Malaquin L, Dupuy B, Descroix S.

Methods Cell Biol. 2018;147:59-75. doi: 10.1016/bs.mcb.2018.07.001. Epub 2018 Jul 29.


Cwp19 Is a Novel Lytic Transglycosylase Involved in Stationary-Phase Autolysis Resulting in Toxin Release in Clostridium difficile.

Wydau-Dematteis S, El Meouche I, Courtin P, Hamiot A, Lai-Kuen R, Saubaméa B, Fenaille F, Butel MJ, Pons JL, Dupuy B, Chapot-Chartier MP, Peltier J.

MBio. 2018 Jun 12;9(3). pii: e00648-18. doi: 10.1128/mBio.00648-18.


Micro-nano-bio acoustic system for the detection of foodborne pathogens in real samples.

Papadakis G, Murasova P, Hamiot A, Tsougeni K, Kaprou G, Eck M, Rabus D, Bilkova Z, Dupuy B, Jobst G, Tserepi A, Gogolides E, Gizeli E.

Biosens Bioelectron. 2018 Jul 15;111:52-58. doi: 10.1016/j.bios.2018.03.056. Epub 2018 Mar 28.


Discovery of new type I toxin-antitoxin systems adjacent to CRISPR arrays in Clostridium difficile.

Maikova A, Peltier J, Boudry P, Hajnsdorf E, Kint N, Monot M, Poquet I, Martin-Verstraete I, Dupuy B, Soutourina O.

Nucleic Acids Res. 2018 May 18;46(9):4733-4751. doi: 10.1093/nar/gky124.


Pleiotropic roles of Clostridium difficile sin locus.

Girinathan BP, Ou J, Dupuy B, Govind R.

PLoS Pathog. 2018 Mar 12;14(3):e1006940. doi: 10.1371/journal.ppat.1006940. eCollection 2018 Mar.


High Prevalence and Genetic Diversity of Large phiCD211 (phiCDIF1296T)-Like Prophages in Clostridioides difficile.

Garneau JR, Sekulovic O, Dupuy B, Soutourina O, Monot M, Fortier LC.

Appl Environ Microbiol. 2018 Jan 17;84(3). pii: e02164-17. doi: 10.1128/AEM.02164-17. Print 2018 Feb 1.


Advanced immunocapture of milk-borne Salmonella by microfluidic magnetically stabilized fluidized bed.

Srbova J, Krulisova P, Holubova L, Pereiro I, Bendali A, Hamiot A, Podzemna V, Macak J, Dupuy B, Descroix S, Viovy JL, Bilkova Z.

Electrophoresis. 2018 Feb;39(3):526-533. doi: 10.1002/elps.201700257. Epub 2017 Sep 26.


A new microfluidic approach for the one-step capture, amplification and label-free quantification of bacteria from raw samples.

Pereiro I, Bendali A, Tabnaoui S, Alexandre L, Srbova J, Bilkova Z, Deegan S, Joshi L, Viovy JL, Malaquin L, Dupuy B, Descroix S.

Chem Sci. 2017 Feb 1;8(2):1329-1336. doi: 10.1039/c6sc03880h. Epub 2016 Oct 10.


Effect of tcdR Mutation on Sporulation in the Epidemic Clostridium difficile Strain R20291.

Girinathan BP, Monot M, Boyle D, McAllister KN, Sorg JA, Dupuy B, Govind R.

mSphere. 2017 Feb 15;2(1). pii: e00383-16. doi: 10.1128/mSphere.00383-16. eCollection 2017 Jan-Feb.


The alternative sigma factor σB plays a crucial role in adaptive strategies of Clostridium difficile during gut infection.

Kint N, Janoir C, Monot M, Hoys S, Soutourina O, Dupuy B, Martin-Verstraete I.

Environ Microbiol. 2017 May;19(5):1933-1958. doi: 10.1111/1462-2920.13696. Epub 2017 Mar 21.


What's a SNP between friends: The influence of single nucleotide polymorphisms on virulence and phenotypes of Clostridium difficile strain 630 and derivatives.

Collery MM, Kuehne SA, McBride SM, Kelly ML, Monot M, Cockayne A, Dupuy B, Minton NP.

Virulence. 2017 Aug 18;8(6):767-781. doi: 10.1080/21505594.2016.1237333. Epub 2016 Sep 21.


A Recombination Directionality Factor Controls the Cell Type-Specific Activation of σK and the Fidelity of Spore Development in Clostridium difficile.

Serrano M, Kint N, Pereira FC, Saujet L, Boudry P, Dupuy B, Henriques AO, Martin-Verstraete I.

PLoS Genet. 2016 Sep 15;12(9):e1006312. doi: 10.1371/journal.pgen.1006312. eCollection 2016 Sep.


Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes.

Antunes LC, Poppleton D, Klingl A, Criscuolo A, Dupuy B, Brochier-Armanet C, Beloin C, Gribaldo S.

Elife. 2016 Aug 31;5. pii: e14589. doi: 10.7554/eLife.14589.


Deciphering Adaptation Strategies of the Epidemic Clostridium difficile 027 Strain during Infection through In Vivo Transcriptional Analysis.

Kansau I, Barketi-Klai A, Monot M, Hoys S, Dupuy B, Janoir C, Collignon A.

PLoS One. 2016 Jun 28;11(6):e0158204. doi: 10.1371/journal.pone.0158204. eCollection 2016.


Control of Clostridium difficile Physiopathology in Response to Cysteine Availability.

Dubois T, Dancer-Thibonnier M, Monot M, Hamiot A, Bouillaut L, Soutourina O, Martin-Verstraete I, Dupuy B.

Infect Immun. 2016 Jul 21;84(8):2389-405. doi: 10.1128/IAI.00121-16. Print 2016 Aug.


Micro-Nano-Bio Diagnostic System for Food Pathogen Detection Revolutionizes Food Safety Management & Protects Consumers Health.

Gogolides E, Tserepi A, Jobst G, Friedt JM, Rabus D, Dupuy B, Bilkova Z, Descroix S, Viovy JL, Papadakis G, Gizeli E.

Stud Health Technol Inform. 2016;224:67-72.


The Regulatory Networks That Control Clostridium difficile Toxin Synthesis.

Martin-Verstraete I, Peltier J, Dupuy B.

Toxins (Basel). 2016 May 14;8(5). pii: E153. doi: 10.3390/toxins8050153. Review.


Cpe1786/IscR of Clostridium perfringens represses expression of genes involved in Fe-S cluster biogenesis.

André G, Haudecoeur E, Courtois E, Monot M, Dupuy B, Rodionov DA, Martin-Verstraete I.

Res Microbiol. 2017 May;168(4):345-355. doi: 10.1016/j.resmic.2016.03.002. Epub 2016 Mar 26.


Efficacy and safety profile of memantine in patients with cognitive impairment in multiple sclerosis: A randomized, placebo-controlled study.

Peyro Saint Paul L, Creveuil C, Heinzlef O, De Seze J, Vermersch P, Castelnovo G, Cabre P, Debouverie M, Brochet B, Dupuy B, Lebiez P, Sartori É, Clavelou P, Brassat D, Lebrun-Frenay C, Daplaud D, Pelletier J, Coman I, Hautecoeur P, Tourbah A, Defer G.

J Neurol Sci. 2016 Apr 15;363:69-76. doi: 10.1016/j.jns.2016.02.012. Epub 2016 Feb 6.


Plasma nanotextured polymeric lab-on-a-chip for highly efficient bacteria capture and lysis.

Tsougeni K, Papadakis G, Gianneli M, Grammoustianou A, Constantoudis V, Dupuy B, Petrou PS, Kakabakos SE, Tserepi A, Gizeli E, Gogolides E.

Lab Chip. 2016 Jan 7;16(1):120-31. doi: 10.1039/c5lc01217a. Epub 2015 Nov 11.


Clostridium difficile: New Insights into the Evolution of the Pathogenicity Locus.

Monot M, Eckert C, Lemire A, Hamiot A, Dubois T, Tessier C, Dumoulard B, Hamel B, Petit A, Lalande V, Ma L, Bouchier C, Barbut F, Dupuy B.

Sci Rep. 2015 Oct 8;5:15023. doi: 10.1038/srep15023.


Erratum for Boudry et al., function of the CRISPR-Cas system of the human pathogen Clostridium difficile.

Boudry P, Semenova E, Monot M, Datsenko KA, Lopatina A, Sekulovic O, Ospina-Bedoya M, Fortier LC, Severinov K, Dupuy B, Soutourina O.

MBio. 2015 Oct 6;6(5):e01508-15. doi: 10.1128/mBio.01508-15. No abstract available.


Integration of erm(B)-containing elements through large chromosome fragment exchange in Clostridium difficile.

Wasels F, Spigaglia P, Barbanti F, Monot M, Villa L, Dupuy B, Carattoli A, Mastrantonio P.

Mob Genet Elements. 2015 Feb 3;5(1):12-16. eCollection 2015 Jan-Feb.


Function of the CRISPR-Cas System of the Human Pathogen Clostridium difficile.

Boudry P, Semenova E, Monot M, Datsenko KA, Lopatina A, Sekulovic O, Ospina-Bedoya M, Fortier LC, Severinov K, Dupuy B, Soutourina O.

MBio. 2015 Sep 1;6(5):e01112-15. doi: 10.1128/mBio.01112-15. Erratum in: MBio. 2015;6(5):e01508-15.


Large-scale recent expansion of European patrilineages shown by population resequencing.

Batini C, Hallast P, Zadik D, Delser PM, Benazzo A, Ghirotto S, Arroyo-Pardo E, Cavalleri GL, de Knijff P, Dupuy BM, Eriksen HA, King TE, de Munain AL, López-Parra AM, Loutradis A, Milasin J, Novelletto A, Pamjav H, Sajantila A, Tolun A, Winney B, Jobling MA.

Nat Commun. 2015 May 19;6:7152. doi: 10.1038/ncomms8152.


Repressor activity of the RpoS/σS-dependent RNA polymerase requires DNA binding.

Lévi-Meyrueis C, Monteil V, Sismeiro O, Dillies MA, Kolb A, Monot M, Dupuy B, Duarte SS, Jagla B, Coppée JY, Beraud M, Norel F.

Nucleic Acids Res. 2015 Feb 18;43(3):1456-68. doi: 10.1093/nar/gku1379. Epub 2015 Jan 10.


The Y-chromosome tree bursts into leaf: 13,000 high-confidence SNPs covering the majority of known clades.

Hallast P, Batini C, Zadik D, Maisano Delser P, Wetton JH, Arroyo-Pardo E, Cavalleri GL, de Knijff P, Destro Bisol G, Dupuy BM, Eriksen HA, Jorde LB, King TE, Larmuseau MH, López de Munain A, López-Parra AM, Loutradis A, Milasin J, Novelletto A, Pamjav H, Sajantila A, Schempp W, Sears M, Tolun A, Tyler-Smith C, Van Geystelen A, Watkins S, Winney B, Jobling MA.

Mol Biol Evol. 2015 Mar;32(3):661-73. doi: 10.1093/molbev/msu327. Epub 2014 Dec 2.


Integration of metabolism and virulence in Clostridium difficile.

Bouillaut L, Dubois T, Sonenshein AL, Dupuy B.

Res Microbiol. 2015 May;166(4):375-83. doi: 10.1016/j.resmic.2014.10.002. Epub 2014 Oct 15. Review.


Inter- and intraspecies transfer of a Clostridium difficile conjugative transposon conferring resistance to MLSB.

Wasels F, Monot M, Spigaglia P, Barbanti F, Ma L, Bouchier C, Dupuy B, Mastrantonio P.

Microb Drug Resist. 2014 Dec;20(6):555-60. doi: 10.1089/mdr.2014.0015.


Pleiotropic role of the RNA chaperone protein Hfq in the human pathogen Clostridium difficile.

Boudry P, Gracia C, Monot M, Caillet J, Saujet L, Hajnsdorf E, Dupuy B, Martin-Verstraete I, Soutourina O.

J Bacteriol. 2014 Sep;196(18):3234-48. doi: 10.1128/JB.01923-14. Epub 2014 Jun 30.


Toward male individualization with rapidly mutating y-chromosomal short tandem repeats.

Ballantyne KN, Ralf A, Aboukhalid R, Achakzai NM, Anjos MJ, Ayub Q, Balažic J, Ballantyne J, Ballard DJ, Berger B, Bobillo C, Bouabdellah M, Burri H, Capal T, Caratti S, Cárdenas J, Cartault F, Carvalho EF, Carvalho M, Cheng B, Coble MD, Comas D, Corach D, D'Amato ME, Davison S, de Knijff P, De Ungria MC, Decorte R, Dobosz T, Dupuy BM, Elmrghni S, Gliwiński M, Gomes SC, Grol L, Haas C, Hanson E, Henke J, Henke L, Herrera-Rodríguez F, Hill CR, Holmlund G, Honda K, Immel UD, Inokuchi S, Jobling MA, Kaddura M, Kim JS, Kim SH, Kim W, King TE, Klausriegler E, Kling D, Kovačević L, Kovatsi L, Krajewski P, Kravchenko S, Larmuseau MH, Lee EY, Lessig R, Livshits LA, Marjanović D, Minarik M, Mizuno N, Moreira H, Morling N, Mukherjee M, Munier P, Nagaraju J, Neuhuber F, Nie S, Nilasitsataporn P, Nishi T, Oh HH, Olofsson J, Onofri V, Palo JU, Pamjav H, Parson W, Petlach M, Phillips C, Ploski R, Prasad SP, Primorac D, Purnomo GA, Purps J, Rangel-Villalobos H, Rębała K, Rerkamnuaychoke B, Gonzalez DR, Robino C, Roewer L, Rosa A, Sajantila A, Sala A, Salvador JM, Sanz P, Schmitt C, Sharma AK, Silva DA, Shin KJ, Sijen T, Sirker M, Siváková D, Skaro V, Solano-Matamoros C, Souto L, Stenzl V, Sudoyo H, Syndercombe-Court D, Tagliabracci A, Taylor D, Tillmar A, Tsybovsky IS, Tyler-Smith C, van der Gaag KJ, Vanek D, Völgyi A, Ward D, Willemse P, Yap EP, Yong RY, Pajnič IZ, Kayser M.

Hum Mutat. 2014 Aug;35(8):1021-32. doi: 10.1002/humu.22599. Epub 2014 Jul 14.


Multidisciplinary analysis of a nontoxigenic Clostridium difficile strain with stable resistance to metronidazole.

Moura I, Monot M, Tani C, Spigaglia P, Barbanti F, Norais N, Dupuy B, Bouza E, Mastrantonio P.

Antimicrob Agents Chemother. 2014 Aug;58(8):4957-60. doi: 10.1128/AAC.02350-14. Epub 2014 Jun 9.


The flagellin FliC of Clostridium difficile is responsible for pleiotropic gene regulation during in vivo infection.

Barketi-Klai A, Monot M, Hoys S, Lambert-Bordes S, Kuehne SA, Minton N, Collignon A, Dupuy B, Kansau I.

PLoS One. 2014 May 19;9(5):e96876. doi: 10.1371/journal.pone.0096876. eCollection 2014.


Expanding the RpoS/σS-network by RNA sequencing and identification of σS-controlled small RNAs in Salmonella.

Lévi-Meyrueis C, Monteil V, Sismeiro O, Dillies MA, Monot M, Jagla B, Coppée JY, Dupuy B, Norel F.

PLoS One. 2014 May 8;9(5):e96918. doi: 10.1371/journal.pone.0096918. eCollection 2014.


Bilateral eyelid retraction, loss of vision, ophthalmoplegia: an atypical triad in anti-GQ1b syndrome.

Lamotte G, Laballe R, Dupuy B.

Rev Neurol (Paris). 2014 Jun-Jul;170(6-7):469-70. doi: 10.1016/j.neurol.2014.03.001. Epub 2014 Apr 13. No abstract available.


The LexA regulated genes of the Clostridium difficile.

Walter BM, Rupnik M, Hodnik V, Anderluh G, Dupuy B, Paulič N, Žgur-Bertok D, Butala M.

BMC Microbiol. 2014 Apr 8;14:88. doi: 10.1186/1471-2180-14-88.


COV2HTML: a visualization and analysis tool of bacterial next generation sequencing (NGS) data for postgenomics life scientists.

Monot M, Orgeur M, Camiade E, Brehier C, Dupuy B.

OMICS. 2014 Mar;18(3):184-95. doi: 10.1089/omi.2013.0119. Epub 2014 Feb 10.


Sequence similarity of Clostridium difficile strains by analysis of conserved genes and genome content is reflected by their ribotype affiliation.

Kurka H, Ehrenreich A, Ludwig W, Monot M, Rupnik M, Barbut F, Indra A, Dupuy B, Liebl W.

PLoS One. 2014 Jan 23;9(1):e86535. doi: 10.1371/journal.pone.0086535. eCollection 2014.


Characterization of the SigD regulon of C. difficile and its positive control of toxin production through the regulation of tcdR.

El Meouche I, Peltier J, Monot M, Soutourina O, Pestel-Caron M, Dupuy B, Pons JL.

PLoS One. 2013 Dec 16;8(12):e83748. doi: 10.1371/journal.pone.0083748. eCollection 2013.


The spore differentiation pathway in the enteric pathogen Clostridium difficile.

Pereira FC, Saujet L, Tomé AR, Serrano M, Monot M, Couture-Tosi E, Martin-Verstraete I, Dupuy B, Henriques AO.

PLoS Genet. 2013;9(10):e1003782. doi: 10.1371/journal.pgen.1003782. Epub 2013 Oct 3.


Genome-wide analysis of cell type-specific gene transcription during spore formation in Clostridium difficile.

Saujet L, Pereira FC, Serrano M, Soutourina O, Monot M, Shelyakin PV, Gelfand MS, Dupuy B, Henriques AO, Martin-Verstraete I.

PLoS Genet. 2013;9(10):e1003756. doi: 10.1371/journal.pgen.1003756. Epub 2013 Oct 3.


Adaptive strategies and pathogenesis of Clostridium difficile from in vivo transcriptomics.

Janoir C, Denève C, Bouttier S, Barbut F, Hoys S, Caleechum L, Chapetón-Montes D, Pereira FC, Henriques AO, Collignon A, Monot M, Dupuy B.

Infect Immun. 2013 Oct;81(10):3757-69. doi: 10.1128/IAI.00515-13. Epub 2013 Jul 29. Erratum in: Infect Immun. 2014 Feb;82(2):914.


Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile.

Soutourina OA, Monot M, Boudry P, Saujet L, Pichon C, Sismeiro O, Semenova E, Severinov K, Le Bouguenec C, Coppée JY, Dupuy B, Martin-Verstraete I.

PLoS Genet. 2013 May;9(5):e1003493. doi: 10.1371/journal.pgen.1003493. Epub 2013 May 9.

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