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Items: 1 to 50 of 52

1.

Putatively asexual chrysophytes have meiotic genes: evidence from transcriptomic data.

Kraus D, Chi J, Boenigk J, Beisser D, Graupner N, Dunthorn M.

PeerJ. 2019 Jan 16;6:e5894. doi: 10.7717/peerj.5894. eCollection 2019.

2.

Diatom diversity through HTS-metabarcoding in coastal European seas.

Piredda R, Claverie JM, Decelle J, de Vargas C, Dunthorn M, Edvardsen B, Eikrem W, Forster D, Kooistra WHCF, Logares R, Massana R, Montresor M, Not F, Ogata H, Pawlowski J, Romac S, Sarno D, Stoeck T, Zingone A.

Sci Rep. 2018 Dec 24;8(1):18059. doi: 10.1038/s41598-018-36345-9.

3.

Protist Biodiversity and Biogeography in Lakes From Four Brazilian River-Floodplain Systems.

Lentendu G, Buosi PRB, Cabral AF, Trevizan Segóvia B, Ramos Meira B, Lansac-Tôha FM, Velho LFM, Ritter CD, Dunthorn M.

J Eukaryot Microbiol. 2019 Jul;66(4):592-599. doi: 10.1111/jeu.12703. Epub 2018 Dec 21.

PMID:
30474198
4.

Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean.

Decelle J, Carradec Q, Pochon X, Henry N, Romac S, Mahé F, Dunthorn M, Kourlaiev A, Voolstra CR, Wincker P, de Vargas C.

Curr Biol. 2018 Nov 19;28(22):3625-3633.e3. doi: 10.1016/j.cub.2018.09.024. Epub 2018 Nov 8.

PMID:
30416058
5.

The affiliation of Hexasterias problematica and Halodinium verrucatum sp. nov. to ciliate cysts based on molecular phylogeny and cyst wall composition.

Gurdebeke PR, Mertens KN, Takano Y, Yamaguchi A, Bogus K, Dunthorn M, Matsuoka K, Vrielinck H, Louwye S.

Eur J Protistol. 2018 Oct;66:115-135. doi: 10.1016/j.ejop.2018.09.002. Epub 2018 Sep 14.

PMID:
30261410
6.

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes.

Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, Del Campo J, Dunthorn M, Edvardsen B, Eglit Y, Guillou L, Hampl V, Heiss AA, Hoppenrath M, James TY, Karnkowska A, Karpov S, Kim E, Kolisko M, Kudryavtsev A, Lahr DJG, Lara E, Le Gall L, Lynn DH, Mann DG, Massana R, Mitchell EAD, Morrow C, Park JS, Pawlowski JW, Powell MJ, Richter DJ, Rueckert S, Shadwick L, Shimano S, Spiegel FW, Torruella G, Youssef N, Zlatogursky V, Zhang Q.

J Eukaryot Microbiol. 2019 Jan;66(1):4-119. doi: 10.1111/jeu.12691.

7.

Consistent patterns of high alpha and low beta diversity in tropical parasitic and free-living protists.

Lentendu G, Mahé F, Bass D, Rueckert S, Stoeck T, Dunthorn M.

Mol Ecol. 2018 Jul;27(13):2846-2857. doi: 10.1111/mec.14731. Epub 2018 Jun 17.

PMID:
29851187
8.

Clarifying the Relationships between Microsporidia and Cryptomycota.

Bass D, Czech L, Williams BAP, Berney C, Dunthorn M, Mahé F, Torruella G, Stentiford GD, Williams TA.

J Eukaryot Microbiol. 2018 Nov;65(6):773-782. doi: 10.1111/jeu.12519. Epub 2018 Apr 28.

9.

Soil protists: a fertile frontier in soil biology research.

Geisen S, Mitchell EAD, Adl S, Bonkowski M, Dunthorn M, Ekelund F, Fernández LD, Jousset A, Krashevska V, Singer D, Spiegel FW, Walochnik J, Lara E.

FEMS Microbiol Rev. 2018 May 1;42(3):293-323. doi: 10.1093/femsre/fuy006. Review.

PMID:
29447350
10.

Meiotic Genes in Colpodean Ciliates Support Secretive Sexuality.

Dunthorn M, Zufall RA, Chi J, Paszkiewicz K, Moore K, Mahé F.

Genome Biol Evol. 2017 Jun 1;9(6):1781-1787. doi: 10.1093/gbe/evx125.

11.

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests.

Mahé F, de Vargas C, Bass D, Czech L, Stamatakis A, Lara E, Singer D, Mayor J, Bunge J, Sernaker S, Siemensmeyer T, Trautmann I, Romac S, Berney C, Kozlov A, Mitchell EAD, Seppey CVW, Egge E, Lentendu G, Wirth R, Trueba G, Dunthorn M.

Nat Ecol Evol. 2017 Mar 20;1(4):91. doi: 10.1038/s41559-017-0091.

PMID:
28812652
12.

Yeasts dominate soil fungal communities in three lowland Neotropical rainforests.

Dunthorn M, Kauserud H, Bass D, Mayor J, Mahé F.

Environ Microbiol Rep. 2017 Oct;9(5):668-675. doi: 10.1111/1758-2229.12575. Epub 2017 Sep 19.

PMID:
28799713
13.

UniEuk: Time to Speak a Common Language in Protistology!

Berney C, Ciuprina A, Bender S, Brodie J, Edgcomb V, Kim E, Rajan J, Parfrey LW, Adl S, Audic S, Bass D, Caron DA, Cochrane G, Czech L, Dunthorn M, Geisen S, Glöckner FO, Mahé F, Quast C, Kaye JZ, Simpson AGB, Stamatakis A, Del Campo J, Yilmaz P, de Vargas C.

J Eukaryot Microbiol. 2017 May;64(3):407-411. doi: 10.1111/jeu.12414. Epub 2017 Apr 21. Review.

14.

Beyond the "Code": A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora).

Warren A, Patterson DJ, Dunthorn M, Clamp JC, Achilles-Day UEM, Aescht E, Al-Farraj SA, Al-Quraishy S, Al-Rasheid K, Carr M, Day JG, Dellinger M, El-Serehy HA, Fan Y, Gao F, Gao S, Gong J, Gupta R, Hu X, Kamra K, Langlois G, Lin X, Lipscomb D, Lobban CS, Luporini P, Lynn DH, Ma H, Macek M, Mackenzie-Dodds J, Makhija S, Mansergh RI, Martín-Cereceda M, McMiller N, Montagnes DJS, Nikolaeva S, Ong'ondo GO, Pérez-Uz B, Purushothaman J, Quintela-Alonso P, Rotterová J, Santoferrara L, Shao C, Shen Z, Shi X, Song W, Stoeck T, La Terza A, Vallesi A, Wang M, Weisse T, Wiackowski K, Wu L, Xu K, Yi Z, Zufall R, Agatha S.

J Eukaryot Microbiol. 2017 Jul;64(4):539-554. doi: 10.1111/jeu.12391. Epub 2017 Feb 15. Review.

15.

Benthic protists: the under-charted majority.

Forster D, Dunthorn M, Mahé F, Dolan JR, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Edvardsen B, Egge E, Eikrem W, Gobet A, Kooistra WH, Logares R, Massana R, Montresor M, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Richards TA, Santini S, Sarno D, Siano R, Vaulot D, Wincker P, Zingone A, de Vargas C, Stoeck T.

FEMS Microbiol Ecol. 2016 Aug;92(8). pii: fiw120. doi: 10.1093/femsec/fiw120. Epub 2016 Jun 5.

PMID:
27267932
16.

Comparison of three clustering approaches for detecting novel environmental microbial diversity.

Forster D, Dunthorn M, Stoeck T, Mahé F.

PeerJ. 2016 Feb 25;4:e1692. doi: 10.7717/peerj.1692. eCollection 2016.

17.

Swarm v2: highly-scalable and high-resolution amplicon clustering.

Mahé F, Rognes T, Quince C, de Vargas C, Dunthorn M.

PeerJ. 2015 Dec 10;3:e1420. doi: 10.7717/peerj.1420. eCollection 2015.

18.

Molecular diversity and distribution of marine fungi across 130 European environmental samples.

Richards TA, Leonard G, Mahé F, Del Campo J, Romac S, Jones MD, Maguire F, Dunthorn M, De Vargas C, Massana R, Chambouvet A.

Proc Biol Sci. 2015 Nov 22;282(1819). pii: 20152243. doi: 10.1098/rspb.2015.2243.

19.

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing.

Massana R, Gobet A, Audic S, Bass D, Bittner L, Boutte C, Chambouvet A, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Forn I, Forster D, Guillou L, Jaillon O, Kooistra WH, Logares R, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Probert I, Romac S, Richards T, Santini S, Shalchian-Tabrizi K, Siano R, Simon N, Stoeck T, Vaulot D, Zingone A, de Vargas C.

Environ Microbiol. 2015 Oct;17(10):4035-49. doi: 10.1111/1462-2920.12955. Epub 2015 Aug 4.

PMID:
26119494
20.

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean.

de Vargas C, Audic S, Henry N, Decelle J, Mahé F, Logares R, Lara E, Berney C, Le Bescot N, Probert I, Carmichael M, Poulain J, Romac S, Colin S, Aury JM, Bittner L, Chaffron S, Dunthorn M, Engelen S, Flegontova O, Guidi L, Horák A, Jaillon O, Lima-Mendez G, Lukeš J, Malviya S, Morard R, Mulot M, Scalco E, Siano R, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels-Lewis S; Tara Oceans Coordinators, Acinas SG, Bork P, Bowler C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Raes J, Sieracki ME, Speich S, Stemmann L, Sunagawa S, Weissenbach J, Wincker P, Karsenti E.

Science. 2015 May 22;348(6237):1261605. doi: 10.1126/science.1261605.

21.

Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms.

Forster D, Bittner L, Karkar S, Dunthorn M, Romac S, Audic S, Lopez P, Stoeck T, Bapteste E.

BMC Biol. 2015 Feb 24;13:16. doi: 10.1186/s12915-015-0125-5.

22.

Report of the 2014 joint workshop of the international research coordination network for biodiversity of ciliates and the british society for protist biology.

Dunthorn M, Zufall RA, Lobban C.

Eur J Protistol. 2015 Feb;51(1):118-9. doi: 10.1016/j.ejop.2015.02.001. No abstract available.

PMID:
25721365
23.

Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds.

Filker S, Gimmler A, Dunthorn M, Mahé F, Stoeck T.

Extremophiles. 2015 Mar;19(2):283-95. doi: 10.1007/s00792-014-0713-2. Epub 2014 Dec 4.

PMID:
25472012
24.

Comparing High-throughput Platforms for Sequencing the V4 Region of SSU-rDNA in Environmental Microbial Eukaryotic Diversity Surveys.

Mahé F, Mayor J, Bunge J, Chi J, Siemensmeyer T, Stoeck T, Wahl B, Paprotka T, Filker S, Dunthorn M.

J Eukaryot Microbiol. 2015 May-Jun;62(3):338-45. doi: 10.1111/jeu.12187. Epub 2014 Nov 20.

PMID:
25312509
25.

Swarm: robust and fast clustering method for amplicon-based studies.

Mahé F, Rognes T, Quince C, de Vargas C, Dunthorn M.

PeerJ. 2014 Sep 25;2:e593. doi: 10.7717/peerj.593. eCollection 2014.

26.

Cryptic sex in Symbiodinium (Alveolata, Dinoflagellata) is supported by an inventory of meiotic genes.

Chi J, Parrow MW, Dunthorn M.

J Eukaryot Microbiol. 2014 May-Jun;61(3):322-7.

PMID:
24904932
27.

Ciliates and the rare biosphere: a review.

Dunthorn M, Stoeck T, Clamp J, Warren A, Mahé F.

J Eukaryot Microbiol. 2014 Jul-Aug;61(4):404-9. doi: 10.1111/jeu.12121. Epub 2014 Jun 2. Review.

PMID:
24801645
28.

Patterns of rare and abundant marine microbial eukaryotes.

Logares R, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Gobet A, Kooistra WH, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Stoeck T, Santini S, Siano R, Wincker P, Zingone A, Richards TA, de Vargas C, Massana R.

Curr Biol. 2014 Apr 14;24(8):813-21. doi: 10.1016/j.cub.2014.02.050. Epub 2014 Apr 3.

29.

"Candidatus Haloectosymbiotes riaformosensis" (Halobacteriaceae), an archaeal ectosymbiont of the hypersaline ciliate Platynematum salinarum.

Filker S, Kaiser M, Rosselló-Móra R, Dunthorn M, Lax G, Stoeck T.

Syst Appl Microbiol. 2014 Jun;37(4):244-51. doi: 10.1016/j.syapm.2014.01.001. Epub 2014 Mar 12.

PMID:
24629416
30.

The chaos prevails: molecular phylogeny of the Haptoria (Ciliophora, Litostomatea).

Vďačný P, Breiner HW, Yashchenko V, Dunthorn M, Stoeck T, Foissner W.

Protist. 2014 Jan;165(1):93-111. doi: 10.1016/j.protis.2013.11.001. Epub 2013 Dec 1.

PMID:
24524973
31.

Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context.

Dunthorn M, Otto J, Berger SA, Stamatakis A, Mahé F, Romac S, de Vargas C, Audic S; Biomarks Consortium, Stock A, Kauff F, Stoeck T.

Mol Biol Evol. 2014 Apr;31(4):993-1009. doi: 10.1093/molbev/msu055. Epub 2014 Jan 27.

PMID:
24473288
32.

Meiosis gene inventory of four ciliates reveals the prevalence of a synaptonemal complex-independent crossover pathway.

Chi J, Mahé F, Loidl J, Logsdon J, Dunthorn M.

Mol Biol Evol. 2014 Mar;31(3):660-72. doi: 10.1093/molbev/mst258. Epub 2013 Dec 13.

PMID:
24336924
33.

Identification of the pathogenic ciliate Pseudocohnilembus persalinus (Oligohymenophorea: Scuticociliatia) by fluorescence in situ hybridization.

Zhan Z, Stoeck T, Dunthorn M, Xu K.

Eur J Protistol. 2014 Feb;50(1):16-24. doi: 10.1016/j.ejop.2013.09.004. Epub 2013 Oct 22.

PMID:
24287159
34.

New SSU-rDNA sequences for eleven colpodeans (Ciliophora, Colpodea) and description of Apocyrtolophosis nov. gen.

Foissner W, Bourland WA, Wolf KW, Stoeck T, Dunthorn M.

Eur J Protistol. 2014 Feb;50(1):40-6. doi: 10.1016/j.ejop.2013.09.003. Epub 2013 Oct 6.

PMID:
24210999
35.

The D1-D2 region of the large subunit ribosomal DNA as barcode for ciliates.

Stoeck T, Przybos E, Dunthorn M.

Mol Ecol Resour. 2014 May;14(3):458-68. doi: 10.1111/1755-0998.12195. Epub 2013 Nov 29.

PMID:
24165195
36.

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy.

Guillou L, Bachar D, Audic S, Bass D, Berney C, Bittner L, Boutte C, Burgaud G, de Vargas C, Decelle J, Del Campo J, Dolan JR, Dunthorn M, Edvardsen B, Holzmann M, Kooistra WH, Lara E, Le Bescot N, Logares R, Mahé F, Massana R, Montresor M, Morard R, Not F, Pawlowski J, Probert I, Sauvadet AL, Siano R, Stoeck T, Vaulot D, Zimmermann P, Christen R.

Nucleic Acids Res. 2013 Jan;41(Database issue):D597-604. doi: 10.1093/nar/gks1160. Epub 2012 Nov 27.

37.

CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms.

Pawlowski J, Audic S, Adl S, Bass D, Belbahri L, Berney C, Bowser SS, Cepicka I, Decelle J, Dunthorn M, Fiore-Donno AM, Gile GH, Holzmann M, Jahn R, Jirků M, Keeling PJ, Kostka M, Kudryavtsev A, Lara E, Lukeš J, Mann DG, Mitchell EA, Nitsche F, Romeralo M, Saunders GW, Simpson AG, Smirnov AV, Spouge JL, Stern RF, Stoeck T, Zimmermann J, Schindel D, de Vargas C.

PLoS Biol. 2012;10(11):e1001419. doi: 10.1371/journal.pbio.1001419. Epub 2012 Nov 6. No abstract available.

38.

The revised classification of eukaryotes.

Adl SM, Simpson AG, Lane CE, Lukeš J, Bass D, Bowser SS, Brown MW, Burki F, Dunthorn M, Hampl V, Heiss A, Hoppenrath M, Lara E, Le Gall L, Lynn DH, McManus H, Mitchell EA, Mozley-Stanridge SE, Parfrey LW, Pawlowski J, Rueckert S, Shadwick L, Schoch CL, Smirnov A, Spiegel FW.

J Eukaryot Microbiol. 2012 Sep;59(5):429-93. doi: 10.1111/j.1550-7408.2012.00644.x. Erratum in: J Eukaryot Microbiol. 2013 May-Jun;60(3):321. Shadwick, Lora [corrected to Shadwick, Laura].

39.

Many neglected tropical diseases may have originated in the Paleolithic or before: new insights from genetics.

Trueba G, Dunthorn M.

PLoS Negl Trop Dis. 2012;6(3):e1393. doi: 10.1371/journal.pntd.0001393. Epub 2012 Mar 27. Review.

40.

Expanding character sampling for the molecular phylogeny of euplotid ciliates (Protozoa, Ciliophora) using three markers, with a focus on the family Uronychiidae.

Huang J, Dunthorn M, Song W.

Mol Phylogenet Evol. 2012 Jun;63(3):598-605. doi: 10.1016/j.ympev.2012.02.007. Epub 2012 Feb 22.

PMID:
22387189
41.

Congruence and indifference between two molecular markers for understanding oral evolution in the Marynidae sensu lato (Ciliophora, Colpodea).

Dunthorn M, Katz LA, Stoeck T, Foissner W.

Eur J Protistol. 2012 Nov;48(4):297-304. doi: 10.1016/j.ejop.2012.01.007. Epub 2012 Feb 20.

42.

Heterogeneous rates of molecular evolution among cryptic species of the ciliate morphospecies Chilodonella uncinata.

Katz LA, DeBerardinis J, Hall MS, Kovner AM, Dunthorn M, Muse SV.

J Mol Evol. 2011 Dec;73(5-6):266-72. doi: 10.1007/s00239-011-9468-x. Epub 2012 Jan 19.

43.

Comparing the hyper-variable V4 and V9 regions of the small subunit rDNA for assessment of ciliate environmental diversity.

Dunthorn M, Klier J, Bunge J, Stoeck T.

J Eukaryot Microbiol. 2012 Mar-Apr;59(2):185-7. doi: 10.1111/j.1550-7408.2011.00602.x. Epub 2012 Jan 11.

PMID:
22236102
44.

Intraclass evolution and classification of the Colpodea (Ciliophora).

Foissner W, Stoeck T, Agatha S, Dunthorn M.

J Eukaryot Microbiol. 2011 Sep-Oct;58(5):397-415. doi: 10.1111/j.1550-7408.2011.00566.x. Epub 2011 Jul 18.

45.

Delimiting operational taxonomic units for assessing ciliate environmental diversity using small-subunit rRNA gene sequences.

Nebel M, Pfabel C, Stock A, Dunthorn M, Stoeck T.

Environ Microbiol Rep. 2011 Apr;3(2):154-8. doi: 10.1111/j.1758-2229.2010.00200.x.

PMID:
23761246
46.

Expanding character sampling for ciliate phylogenetic inference using mitochondrial SSU-rDNA as a molecular marker.

Dunthorn M, Foissner W, Katz LA.

Protist. 2011 Jan;162(1):85-99. doi: 10.1016/j.protis.2010.06.003. Epub 2010 Aug 13.

47.

Increasing taxon sampling using both unidentified environmental sequences and identified cultures improves phylogenetic inference in the Prorodontida (Ciliophora, Prostomatea).

Yi Z, Dunthorn M, Song W, Stoeck T.

Mol Phylogenet Evol. 2010 Nov;57(2):937-41. doi: 10.1016/j.ympev.2010.08.001. Epub 2010 Aug 10.

PMID:
20705144
48.

Secretive ciliates and putative asexuality in microbial eukaryotes.

Dunthorn M, Katz LA.

Trends Microbiol. 2010 May;18(5):183-8. doi: 10.1016/j.tim.2010.02.005. Epub 2010 Mar 17.

PMID:
20299224
49.

Phylogenetic placement of the Cyrtolophosididae Stokes, 1888 (Ciliophora; Colpodea) and neotypification of Aristerostoma marinum Kahl, 1931.

Dunthorn M, Eppinger M, Schwarz MV, Schweikert M, Boenigk J, Katz LA, Stoeck T.

Int J Syst Evol Microbiol. 2009 Jan;59(Pt 1):167-80. doi: 10.1099/ijs.0.000935-0.

PMID:
19126743
50.

Molecular phylogenetic analysis of class Colpodea (phylum Ciliophora) using broad taxon sampling.

Dunthorn M, Foissner W, Katz LA.

Mol Phylogenet Evol. 2008 Jan;46(1):316-27. Epub 2007 Aug 28.

PMID:
17920937

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