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Items: 38

1.

Formal Analysis of Network Motifs Links Structure to Function in Biological Programs.

Dunn SJ, Kugler H, Yordanov B.

IEEE/ACM Trans Comput Biol Bioinform. 2019 Nov 11. doi: 10.1109/TCBB.2019.2948157. [Epub ahead of print]

PMID:
31722483
2.

The evolution and transmission of multi-drug resistant Escherichia coli and Klebsiella pneumoniae: the complexity of clones and plasmids.

Dunn SJ, Connor C, McNally A.

Curr Opin Microbiol. 2019 Oct;51:51-56. doi: 10.1016/j.mib.2019.06.004. Epub 2019 Jul 17. Review.

PMID:
31325664
3.

Automated Formal Reasoning to Uncover Molecular Programs of Self-Renewal.

Dunn SJ.

Methods Mol Biol. 2019;1975:79-105. doi: 10.1007/978-1-4939-9224-9_4.

PMID:
31062306
4.

A common molecular logic determines embryonic stem cell self-renewal and reprogramming.

Dunn SJ, Li MA, Carbognin E, Smith A, Martello G.

EMBO J. 2019 Jan 3;38(1). pii: e100003. doi: 10.15252/embj.2018100003. Epub 2018 Nov 27.

5.

Genomic epidemiology of clinical Campylobacter spp. at a single health trust site.

Dunn SJ, Pascoe B, Turton J, Fleming V, Diggle M, Sheppard SK, McNally A, Manning G.

Microb Genom. 2018 Oct;4(10). doi: 10.1099/mgen.0.000227. Epub 2018 Oct 11.

6.

A protein phosphatase network controls the temporal and spatial dynamics of differentiation commitment in human epidermis.

Mishra A, Oulès B, Pisco AO, Ly T, Liakath-Ali K, Walko G, Viswanathan P, Tihy M, Nijjher J, Dunn SJ, Lamond AI, Watt FM.

Elife. 2017 Oct 18;6. pii: e27356. doi: 10.7554/eLife.27356.

7.

A Method to Identify and Analyze Biological Programs through Automated Reasoning.

Yordanov B, Dunn SJ, Kugler H, Smith A, Martello G, Emmott S.

NPJ Syst Biol Appl. 2016 Jul 7;2. pii: 16010. doi: 10.1038/npjsba.2016.10.

8.

How computational models contribute to our understanding of the germ line.

Atwell K, Dunn SJ, Osborne JM, Kugler H, Hubbard EJ.

Mol Reprod Dev. 2016 Nov;83(11):944-957. doi: 10.1002/mrd.22735. Epub 2016 Oct 7. Review.

9.

Automated Synthesis and Analysis of Switching Gene Regulatory Networks.

Shavit Y, Yordanov B, Dunn SJ, Wintersteiger CM, Otani T, Hamadi Y, Livesey FJ, Kugler H.

Biosystems. 2016 Aug;146:26-34. doi: 10.1016/j.biosystems.2016.03.012. Epub 2016 May 10.

10.

Combined changes in Wnt signaling response and contact inhibition induce altered proliferation in radiation-treated intestinal crypts.

Dunn SJ, Osborne JM, Appleton PL, Näthke I.

Mol Biol Cell. 2016 Jun 1;27(11):1863-74. doi: 10.1091/mbc.E15-12-0854. Epub 2016 Apr 6.

11.

ESGE Survey: worldwide practice patterns amongst gastroenterologists regarding the endoscopic management of Barrett's esophagus.

Dunn SJ, Neilson LJ, Hassan C, Sharma P, Guy C, Rees CJ.

Endosc Int Open. 2016 Jan;4(1):E36-41. doi: 10.1055/s-0034-1393247.

12.

Defining an essential transcription factor program for naïve pluripotency.

Dunn SJ, Martello G, Yordanov B, Emmott S, Smith AG.

Science. 2014 Jun 6;344(6188):1156-1160. doi: 10.1126/science.1248882.

13.

Ten simple rules for effective computational research.

Osborne JM, Bernabeu MO, Bruna M, Calderhead B, Cooper J, Dalchau N, Dunn SJ, Fletcher AG, Freeman R, Groen D, Knapp B, McInerny GJ, Mirams GR, Pitt-Francis J, Sengupta B, Wright DW, Yates CA, Gavaghan DJ, Emmott S, Deane C.

PLoS Comput Biol. 2014 Mar 27;10(3):e1003506. doi: 10.1371/journal.pcbi.1003506. eCollection 2014 Mar. No abstract available.

14.

Computational models reveal a passive mechanism for cell migration in the crypt.

Dunn SJ, Näthke IS, Osborne JM.

PLoS One. 2013 Nov 18;8(11):e80516. doi: 10.1371/journal.pone.0080516. eCollection 2013.

15.

Chaste: an open source C++ library for computational physiology and biology.

Mirams GR, Arthurs CJ, Bernabeu MO, Bordas R, Cooper J, Corrias A, Davit Y, Dunn SJ, Fletcher AG, Harvey DG, Marsh ME, Osborne JM, Pathmanathan P, Pitt-Francis J, Southern J, Zemzemi N, Gavaghan DJ.

PLoS Comput Biol. 2013;9(3):e1002970. doi: 10.1371/journal.pcbi.1002970. Epub 2013 Mar 14.

16.

Oligodendrocyte dynamics in the healthy adult CNS: evidence for myelin remodeling.

Young KM, Psachoulia K, Tripathi RB, Dunn SJ, Cossell L, Attwell D, Tohyama K, Richardson WD.

Neuron. 2013 Mar 6;77(5):873-85. doi: 10.1016/j.neuron.2013.01.006.

17.

A two-dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath.

Dunn SJ, Appleton PL, Nelson SA, Näthke IS, Gavaghan DJ, Osborne JM.

PLoS Comput Biol. 2012;8(5):e1002515. doi: 10.1371/journal.pcbi.1002515. Epub 2012 May 24.

18.

Genetic versus census estimators of the opportunity for sexual selection in the wild.

Dunn SJ, Waits LP, Byers JA.

Am Nat. 2012 Apr;179(4):451-62. doi: 10.1086/664626. Epub 2012 Feb 23.

PMID:
22437175
19.

Modelling the role of the basement membrane beneath a growing epithelial monolayer.

Dunn SJ, Fletcher AG, Chapman SJ, Gavaghan DJ, Osborne JM.

J Theor Biol. 2012 Apr 7;298:82-91. doi: 10.1016/j.jtbi.2011.12.013. Epub 2011 Dec 22.

PMID:
22200542
20.

Inbreeding depression in pronghorn (Antilocapra americana) fawns.

Dunn SJ, Clancey E, Waits LP, Byers JA.

Mol Ecol. 2011 Dec;20(23):4889-98. doi: 10.1111/j.1365-294X.2011.05327.x. Epub 2011 Oct 26.

PMID:
22026426
21.

Modeling alveolar volume changes during periodic breathing in heterogeneously ventilated lungs.

Dunn SJ, Whiteley JP.

Ann Biomed Eng. 2010 Sep;38(9):2988-99. doi: 10.1007/s10439-010-0034-2. Epub 2010 Apr 13.

PMID:
20387118
22.

Identification of cell surface targets for HIV-1 therapeutics using genetic screens.

Dunn SJ, Khan IH, Chan UA, Scearce RL, Melara CL, Paul AM, Sharma V, Bih FY, Holzmayer TA, Luciw PA, Abo A.

Virology. 2004 Apr 10;321(2):260-73.

23.

Isolation of efficient antivirals: genetic suppressor elements against HIV-1.

Dunn SJ, Park SW, Sharma V, Raghu G, Simone JM, Tavassoli R, Young LM, Ortega MA, Pan CH, Alegre GJ, Roninson IB, Lipkina G, Dayn A, Holzmayer TA.

Gene Ther. 1999 Jan;6(1):130-7.

24.

Antigenicity, immunogenicity and passive protection induced by immunization of mice with baculovirus-expressed VP7 protein from rhesus rotavirus.

Fiore L, Dunn SJ, Ridolfi B, Ruggeri FM, Mackow ER, Greenberg HB.

J Gen Virol. 1995 Aug;76 ( Pt 8):1981-8.

PMID:
7636478
25.

Health checks for elderly people.

Dunn SJ, Porter MH.

Br J Gen Pract. 1995 May;45(394):272. No abstract available.

26.

Identification of two independent neutralization domains on the VP4 trypsin cleavage products VP5* and VP8* of human rotavirus ST3.

Padilla-Noriega L, Dunn SJ, López S, Greenberg HB, Arias CF.

Virology. 1995 Jan 10;206(1):148-54.

27.

Immunogenicity, antigenicity, and protection efficacy of baculovirus expressed VP4 trypsin cleavage products, VP5(1)* and VP8* from rhesus rotavirus.

Dunn SJ, Fiore L, Werner RL, Cross TL, Broome RL, Ruggeri FM, Greenberg HB.

Arch Virol. 1995;140(11):1969-78.

PMID:
7503695
28.

Comparison of VP4 and VP7 of five murine rotavirus strains.

Dunn SJ, Burns JW, Cross TL, Vo PT, Ward RL, Bremont M, Greenberg HB.

Virology. 1994 Sep;203(2):250-9.

PMID:
8053149
29.
32.

Serotypic and genotypic characterization of human serotype 10 rotaviruses from asymptomatic neonates.

Dunn SJ, Greenberg HB, Ward RL, Nakagomi O, Burns JW, Vo PT, Pax KA, Das M, Gowda K, Rao CD.

J Clin Microbiol. 1993 Jan;31(1):165-9.

34.

Integrated bovine leukosis proviral DNA in T helper and T cytotoxic/suppressor lymphocytes.

Stott ML, Thurmond MC, Dunn SJ, Osburn BI, Stott JL.

J Gen Virol. 1991 Feb;72 ( Pt 2):307-15.

PMID:
1847172
35.

Molecular cloning of serogroup- and serotype-specific genome segments from bluetongue virus serotype 11.

Dunn SJ, Oberst RD, Stott JL, Osburn BI.

Am J Vet Res. 1989 Oct;50(10):1684-9.

PMID:
2552873
36.
37.

Rapid identification of bluetongue virus by nucleic acid hybridization in solution.

Dangler CA, Dunn SJ, Squire KR, Stott JL, Osburn BI.

J Virol Methods. 1988 Aug;20(4):353-65.

PMID:
2846603
38.

Multiple bluetongue virus-cloned genetic probes: application to diagnostics and bluetongue virus genetic relationships.

Squire KR, Chuang RY, Dunn SJ, Dangler CA, Falbo MT, Chuang LF, Osburn BI.

Am J Vet Res. 1986 Aug;47(8):1785-8.

PMID:
3019191

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