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Items: 1 to 50 of 84

1.

We are not so special.

Lewis ZR, Dunn CW.

Elife. 2018 Jul 3;7. pii: e38726. doi: 10.7554/eLife.38726.

2.

Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolution.

Munro C, Siebert S, Zapata F, Howison M, Damian Serrano A, Church SH, Goetz FE, Pugh PR, Haddock SHD, Dunn CW.

Mol Phylogenet Evol. 2018 Jun 22. pii: S1055-7903(18)30046-0. doi: 10.1016/j.ympev.2018.06.030. [Epub ahead of print]

3.

Pairwise comparisons across species are problematic when analyzing functional genomic data.

Dunn CW, Zapata F, Munro C, Siebert S, Hejnol A.

Proc Natl Acad Sci U S A. 2018 Jan 16;115(3):E409-E417. doi: 10.1073/pnas.1707515115. Epub 2018 Jan 4.

4.

Indoles induce metamorphosis in a broad diversity of jellyfish, but not in a crown jelly (Coronatae).

Helm RR, Dunn CW.

PLoS One. 2017 Dec 27;12(12):e0188601. doi: 10.1371/journal.pone.0188601. eCollection 2017.

5.

Spiralian Phylogeny Informs the Evolution of Microscopic Lineages.

Laumer CE, Bekkouche N, Kerbl A, Goetz F, Neves RC, Sørensen MV, Kristensen RM, Hejnol A, Dunn CW, Giribet G, Worsaae K.

Curr Biol. 2017 Dec 18;27(24):3906. doi: 10.1016/j.cub.2017.11.026. No abstract available.

PMID:
29257956
6.

Ctenophore trees.

Dunn CW.

Nat Ecol Evol. 2017 Nov;1(11):1600-1601. doi: 10.1038/s41559-017-0359-4. No abstract available.

PMID:
28993653
7.

Examining the reach of a brief alcohol intervention service in routine practice at a level 1 trauma center.

Turner BJ, McCann BS, Dunn CW, Darnell DA, Beam CR, Kleiber B, Nelson KM, Fukunaga R.

J Subst Abuse Treat. 2017 Aug;79:29-33. doi: 10.1016/j.jsat.2017.05.011. Epub 2017 May 20.

PMID:
28673524
8.

Animal Evolution: Are Phyla Real?

Hejnol A, Dunn CW.

Curr Biol. 2016 May 23;26(10):R424-6. doi: 10.1016/j.cub.2016.03.058.

9.

An Integrated Perspective on Phylogenetic Workflows.

Guang A, Zapata F, Howison M, Lawrence CE, Dunn CW.

Trends Ecol Evol. 2016 Feb;31(2):116-126. doi: 10.1016/j.tree.2015.12.007. Epub 2016 Jan 5. Review.

PMID:
26775796
10.

Genomics: Acorn worms in a nutshell.

Dunn CW.

Nature. 2015 Nov 26;527(7579):448-9. doi: 10.1038/nature16315. Epub 2015 Nov 18. No abstract available.

PMID:
26580019
11.

Phylogenomic Analyses Support Traditional Relationships within Cnidaria.

Zapata F, Goetz FE, Smith SA, Howison M, Siebert S, Church SH, Sanders SM, Ames CL, McFadden CS, France SC, Daly M, Collins AG, Haddock SH, Dunn CW, Cartwright P.

PLoS One. 2015 Oct 14;10(10):e0139068. doi: 10.1371/journal.pone.0139068. eCollection 2015.

12.

The evolution of animal genomes.

Dunn CW, Ryan JF.

Curr Opin Genet Dev. 2015 Dec;35:25-32. doi: 10.1016/j.gde.2015.08.006. Epub 2015 Sep 9. Review.

PMID:
26363125
13.
14.

Automation and Evaluation of the SOWH Test with SOWHAT.

Church SH, Ryan JF, Dunn CW.

Syst Biol. 2015 Nov;64(6):1048-58. doi: 10.1093/sysbio/syv055. Epub 2015 Jul 30.

15.

Spiralian phylogeny informs the evolution of microscopic lineages.

Laumer CE, Bekkouche N, Kerbl A, Goetz F, Neves RC, Sørensen MV, Kristensen RM, Hejnol A, Dunn CW, Giribet G, Worsaae K.

Curr Biol. 2015 Aug 3;25(15):2000-6. doi: 10.1016/j.cub.2015.06.068. Epub 2015 Jul 23. Erratum in: Curr Biol. 2017 Dec 18;27(24):3906.

16.

Par system components are asymmetrically localized in ectodermal epithelia, but not during early development in the sea anemone Nematostella vectensis.

Salinas-Saavedra M, Stephenson TQ, Dunn CW, Martindale MQ.

Evodevo. 2015 May 9;6:20. doi: 10.1186/s13227-015-0014-6. eCollection 2015.

17.

Stem cells in Nanomia bijuga (Siphonophora), a colonial animal with localized growth zones.

Siebert S, Goetz FE, Church SH, Bhattacharyya P, Zapata F, Haddock SH, Dunn CW.

Evodevo. 2015 May 27;6:22. doi: 10.1186/s13227-015-0018-2. eCollection 2015.

18.

The histology of Nanomia bijuga (Hydrozoa: Siphonophora).

Church SH, Siebert S, Bhattacharyya P, Dunn CW.

J Exp Zool B Mol Dev Evol. 2015 Jul;324(5):435-49. doi: 10.1002/jez.b.22629. Epub 2015 Jun 2.

19.

Comparative muscle development of scyphozoan jellyfish with simple and complex life cycles.

Helm RR, Tiozzo S, Lilley MK, Lombard F, Dunn CW.

Evodevo. 2015 Apr 17;6:11. doi: 10.1186/s13227-015-0005-7. eCollection 2015.

20.

The hidden biology of sponges and ctenophores.

Dunn CW, Leys SP, Haddock SH.

Trends Ecol Evol. 2015 May;30(5):282-91. doi: 10.1016/j.tree.2015.03.003. Epub 2015 Mar 31. Review.

21.

A phylogenetic backbone for Bivalvia: an RNA-seq approach.

González VL, Andrade SC, Bieler R, Collins TM, Dunn CW, Mikkelsen PM, Taylor JD, Giribet G.

Proc Biol Sci. 2015 Feb 22;282(1801):20142332. doi: 10.1098/rspb.2014.2332.

22.

Advancing methods for reliably assessing motivational interviewing fidelity using the motivational interviewing skills code.

Lord SP, Can D, Yi M, Marin R, Dunn CW, Imel ZE, Georgiou P, Narayanan S, Steyvers M, Atkins DC.

J Subst Abuse Treat. 2015 Feb;49:50-7. doi: 10.1016/j.jsat.2014.08.005. Epub 2014 Aug 29.

23.

Phylogenomic analyses of deep gastropod relationships reject Orthogastropoda.

Zapata F, Wilson NG, Howison M, Andrade SC, Jörger KM, Schrödl M, Goetz FE, Giribet G, Dunn CW.

Proc Biol Sci. 2014 Nov 7;281(1794):20141739. doi: 10.1098/rspb.2014.1739.

24.

Reconsidering the phylogenetic utility of miRNA in animals.

Dunn CW.

Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):12576-7. doi: 10.1073/pnas.1413545111. Epub 2014 Aug 13. No abstract available.

25.

Bayesian genome assembly and assessment by markov chain monte carlo sampling.

Howison M, Zapata F, Edwards EJ, Dunn CW.

PLoS One. 2014 Jun 26;9(6):e99497. doi: 10.1371/journal.pone.0099497. eCollection 2014.

26.

The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution.

Ryan JF, Pang K, Schnitzler CE, Nguyen AD, Moreland RT, Simmons DK, Koch BJ, Francis WR, Havlak P; NISC Comparative Sequencing Program, Smith SA, Putnam NH, Haddock SH, Dunn CW, Wolfsberg TG, Mullikin JC, Martindale MQ, Baxevanis AD.

Science. 2013 Dec 13;342(6164):1242592. doi: 10.1126/science.1242592.

27.

Agalma: an automated phylogenomics workflow.

Dunn CW, Howison M, Zapata F.

BMC Bioinformatics. 2013 Nov 19;14:330. doi: 10.1186/1471-2105-14-330.

28.

Toward a statistically explicit understanding of de novo sequence assembly.

Howison M, Zapata F, Dunn CW.

Bioinformatics. 2013 Dec 1;29(23):2959-63. doi: 10.1093/bioinformatics/btt525. Epub 2013 Sep 10. Review.

PMID:
24021385
29.

Phylogenetic analysis of gene expression.

Dunn CW, Luo X, Wu Z.

Integr Comp Biol. 2013 Nov;53(5):847-56. doi: 10.1093/icb/ict068. Epub 2013 Jun 7.

30.

Characterization of differential transcript abundance through time during Nematostella vectensis development.

Helm RR, Siebert S, Tulin S, Smith J, Dunn CW.

BMC Genomics. 2013 Apr 19;14:266. doi: 10.1186/1471-2164-14-266.

31.

Evolution: out of the ocean.

Dunn CW.

Curr Biol. 2013 Mar 18;23(6):R241-3. doi: 10.1016/j.cub.2013.01.067.

32.
33.

Resolving the evolutionary relationships of molluscs with phylogenomic tools.

Smith SA, Wilson NG, Goetz FE, Feehery C, Andrade SC, Rouse GW, Giribet G, Dunn CW.

Nature. 2011 Oct 26;480(7377):364-7. doi: 10.1038/nature10526. Erratum in: Nature. 2013 Jan 31;493(7434):708.

PMID:
22031330
34.

Differential gene expression in the siphonophore Nanomia bijuga (Cnidaria) assessed with multiple next-generation sequencing workflows.

Siebert S, Robinson MD, Tintori SC, Goetz F, Helm RR, Smith SA, Shaner N, Haddock SH, Dunn CW.

PLoS One. 2011;6(7):e22953. doi: 10.1371/journal.pone.0022953. Epub 2011 Jul 29.

35.
36.

Assessing the root of bilaterian animals with scalable phylogenomic methods.

Hejnol A, Obst M, Stamatakis A, Ott M, Rouse GW, Edgecombe GD, Martinez P, Baguñà J, Bailly X, Jondelius U, Wiens M, Müller WE, Seaver E, Wheeler WC, Martindale MQ, Giribet G, Dunn CW.

Proc Biol Sci. 2009 Dec 22;276(1677):4261-70. doi: 10.1098/rspb.2009.0896. Epub 2009 Sep 16.

37.

Nationwide survey of alcohol screening and brief intervention practices at US Level I trauma centers.

Terrell F, Zatzick DF, Jurkovich GJ, Rivara FP, Donovan DM, Dunn CW, Schermer C, Meredith JW, Gentilello LM.

J Am Coll Surg. 2008 Nov;207(5):630-8. doi: 10.1016/j.jamcollsurg.2008.05.021. Epub 2008 Jul 14.

38.

The video assessment of simulated encounters-revised (VASE-R): reliability and validity of a revised measure of motivational interviewing skills.

Rosengren DB, Hartzler B, Baer JS, Wells EA, Dunn CW.

Drug Alcohol Depend. 2008 Sep 1;97(1-2):130-8. doi: 10.1016/j.drugalcdep.2008.03.018. Epub 2008 May 21.

39.

Broad phylogenomic sampling improves resolution of the animal tree of life.

Dunn CW, Hejnol A, Matus DQ, Pang K, Browne WE, Smith SA, Seaver E, Rouse GW, Obst M, Edgecombe GD, Sørensen MV, Haddock SH, Schmidt-Rhaesa A, Okusu A, Kristensen RM, Wheeler WC, Martindale MQ, Giribet G.

Nature. 2008 Apr 10;452(7188):745-9. doi: 10.1038/nature06614. Epub 2008 Mar 5.

PMID:
18322464
40.

Phyutility: a phyloinformatics tool for trees, alignments and molecular data.

Smith SA, Dunn CW.

Bioinformatics. 2008 Mar 1;24(5):715-6. doi: 10.1093/bioinformatics/btm619. Epub 2008 Jan 28.

PMID:
18227120
41.

Conservative evolution in duplicated genes of the primate Class I ADH cluster.

Oota H, Dunn CW, Speed WC, Pakstis AJ, Palmatier MA, Kidd JR, Kidd KK.

Gene. 2007 May 1;392(1-2):64-76. Epub 2006 Nov 23.

PMID:
17204375
42.

The evolution of colony-level development in the Siphonophora (Cnidaria:Hydrozoa).

Dunn CW, Wagner GP.

Dev Genes Evol. 2006 Dec;216(12):743-54. Epub 2006 Sep 16.

PMID:
16983540
43.

Broad taxon and gene sampling indicate that chaetognaths are protostomes.

Matus DQ, Copley RR, Dunn CW, Hejnol A, Eccleston H, Halanych KM, Martindale MQ, Telford MJ.

Curr Biol. 2006 Aug 8;16(15):R575-6. No abstract available.

44.

Endovascular radiofrequency obliteration using 90 degrees C for treatment of great saphenous vein.

Dunn CW, Kabnick LS, Merchant RF, Owens R, Weiss RA.

Ann Vasc Surg. 2006 Sep;20(5):625-9. Epub 2006 Jul 25.

PMID:
16865607
45.

Molecular evidence for deep evolutionary roots of bilaterality in animal development.

Matus DQ, Pang K, Marlow H, Dunn CW, Thomsen GH, Martindale MQ.

Proc Natl Acad Sci U S A. 2006 Jul 25;103(30):11195-200. Epub 2006 Jul 12.

46.
47.

The video assessment of simulated encounters (VASE): Development and validation of a group-administered method for evaluating clinician skills in motivational interviewing.

Rosengren DB, Baer JS, Hartzler B, Dunn CW, Wells EA.

Drug Alcohol Depend. 2005 Sep 1;79(3):321-30. Epub 2005 Mar 29.

PMID:
16102376
48.

Bioluminescent and red-fluorescent lures in a deep-sea siphonophore.

Haddock SH, Dunn CW, Pugh PR, Schnitzler CE.

Science. 2005 Jul 8;309(5732):263.

50.

Adaptive evolution of HoxA-11 and HoxA-13 at the origin of the uterus in mammals.

Lynch VJ, Roth JJ, Takahashi K, Dunn CW, Nonaka DF, Stopper GF, Wagner GP.

Proc Biol Sci. 2004 Nov 7;271(1554):2201-7.

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