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Items: 1 to 50 of 75

1.

The origin of aerobic methanotrophy within the Proteobacteria.

Kang CS, Dunfield PF, Semrau JD.

FEMS Microbiol Lett. 2019 May 1;366(9). pii: fnz096. doi: 10.1093/femsle/fnz096.

PMID:
31054238
2.

Evolutionary History of Copper Membrane Monooxygenases.

Khadka R, Clothier L, Wang L, Lim CK, Klotz MG, Dunfield PF.

Front Microbiol. 2018 Oct 29;9:2493. doi: 10.3389/fmicb.2018.02493. eCollection 2018.

3.

Analysis of microbial communities in natural halite springs reveals a domain-dependent relationship of species diversity to osmotic stress.

Ruhl IA, Grasby SE, Haupt ES, Dunfield PF.

Environ Microbiol Rep. 2018 Dec;10(6):695-703. doi: 10.1111/1758-2229.12695. Epub 2018 Oct 15.

PMID:
30246403
4.

Biofiltration of methane.

La H, Hettiaratchi JPA, Achari G, Dunfield PF.

Bioresour Technol. 2018 Nov;268:759-772. doi: 10.1016/j.biortech.2018.07.043. Epub 2018 Jul 10. Review.

PMID:
30064899
5.

Stable Isotope and Metagenomic Profiling of a Methanogenic Naphthalene-Degrading Enrichment Culture.

Toth CRA, Berdugo-Clavijo C, O'Farrell CM, Jones GM, Sheremet A, Dunfield PF, Gieg LM.

Microorganisms. 2018 Jul 10;6(3). pii: E65. doi: 10.3390/microorganisms6030065.

6.

Biofiltration of methane using hybrid mixtures of biochar, lava rock and compost.

La H, Hettiaratchi JPA, Achari G, Verbeke TJ, Dunfield PF.

Environ Pollut. 2018 Oct;241:45-54. doi: 10.1016/j.envpol.2018.05.039. Epub 2018 May 21.

PMID:
29793107
7.

Differential Transcriptional Activation of Genes Encoding Soluble Methane Monooxygenase in a Facultative Versus an Obligate Methanotroph.

Smirnova AV, Dunfield PF.

Microorganisms. 2018 Mar 6;6(1). pii: E20. doi: 10.3390/microorganisms6010020.

8.

Oleiharenicola alkalitolerans gen. nov., sp. nov., a new member of the phylum Verrucomicrobia isolated from an oilsands tailings pond.

Rochman FF, Kim JJ, Rijpstra WIC, Sinninghe Damsté JS, Schumann P, Verbeke TJ, Dunfield PF.

Int J Syst Evol Microbiol. 2018 Feb 20. doi: 10.1099/ijsem.0.002624. [Epub ahead of print]

PMID:
29461179
9.

Benzene and Naphthalene Degrading Bacterial Communities in an Oil Sands Tailings Pond.

Rochman FF, Sheremet A, Tamas I, Saidi-Mehrabad A, Kim JJ, Dong X, Sensen CW, Gieg LM, Dunfield PF.

Front Microbiol. 2017 Sep 28;8:1845. doi: 10.3389/fmicb.2017.01845. eCollection 2017.

10.

Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems.

Frindte K, Kalyuzhnaya MG, Bringel F, Dunfield PF, Jetten MSM, Khmelenina VN, Klotz MG, Murrell JC, Op den Camp HJM, Sakai Y, Semrau JD, Shapiro N, DiSpirito AA, Stein LY, Svenning MM, Trotsenko YA, Vuilleumier S, Woyke T, Knief C.

Genome Announc. 2017 Aug 17;5(33). pii: e00526-17. doi: 10.1128/genomeA.00526-17.

11.

Actinocrinis puniceicyclus gen. nov., sp. nov., an actinobacterium isolated from an acidic spring.

Kim JJ, Marjerrison CE, Cornish Shartau SL, Brady AL, Sharp CE, Rijpstra WIC, Sinninghe Damsté JS, Schumann P, Grasby SE, Dunfield PF.

Int J Syst Evol Microbiol. 2017 Mar;67(3):602-609. doi: 10.1099/ijsem.0.001667. Epub 2017 Apr 3.

PMID:
27902294
12.

Next-Generation Sequencing Assessment of Eukaryotic Diversity in Oil Sands Tailings Ponds Sediments and Surface Water.

Aguilar M, Richardson E, Tan B, Walker G, Dunfield PF, Bass D, Nesbø C, Foght J, Dacks JB.

J Eukaryot Microbiol. 2016 Nov;63(6):732-743. doi: 10.1111/jeu.12320. Epub 2016 May 2.

PMID:
27062087
13.

Emended description of the family Beijerinckiaceae and transfer of the genera Chelatococcus and Camelimonas to the family Chelatococcaceae fam. nov.

Dedysh SN, Haupt ES, Dunfield PF.

Int J Syst Evol Microbiol. 2016 Aug;66(8):3177-82. doi: 10.1099/ijsem.0.001167. Epub 2016 May 19.

PMID:
27199265
14.

The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone.

Lee KC, Stott MB, Dunfield PF, Huttenhower C, McDonald IR, Morgan XC.

Appl Environ Microbiol. 2016 May 31;82(12):3572-81. doi: 10.1128/AEM.00139-16. Print 2016 Jun 15.

15.

Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs.

Eloe-Fadrosh EA, Paez-Espino D, Jarett J, Dunfield PF, Hedlund BP, Dekas AE, Grasby SE, Brady AL, Dong H, Briggs BR, Li WJ, Goudeau D, Malmstrom R, Pati A, Pett-Ridge J, Rubin EM, Woyke T, Kyrpides NC, Ivanova NN.

Nat Commun. 2016 Jan 27;7:10476. doi: 10.1038/ncomms10476.

16.

Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems.

Flynn JD, Hirayama H, Sakai Y, Dunfield PF, Klotz MG, Knief C, Op den Camp HJ, Jetten MS, Khmelenina VN, Trotsenko YA, Murrell JC, Semrau JD, Svenning MM, Stein LY, Kyrpides N, Shapiro N, Woyke T, Bringel F, Vuilleumier S, DiSpirito AA, Kalyuzhnaya MG.

Genome Announc. 2016 Jan 21;4(1). pii: e01629-15. doi: 10.1128/genomeA.01629-15.

17.

Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T).

Lee KC, Morgan XC, Power JF, Dunfield PF, Huttenhower C, Stott MB.

Stand Genomic Sci. 2015 Nov 14;10:101. doi: 10.1186/s40793-015-0099-5. eCollection 2015.

18.

Anaerobic carboxydotrophic bacteria in geothermal springs identified using stable isotope probing.

Brady AL, Sharp CE, Grasby SE, Dunfield PF.

Front Microbiol. 2015 Sep 1;6:897. doi: 10.3389/fmicb.2015.00897. eCollection 2015.

19.

Draft Genome Sequence of the Moderately Halophilic Methanotroph Methylohalobius crimeensis Strain 10Ki.

Sharp CE, Smirnova AV, Kalyuzhnaya MG, Bringel F, Hirayama H, Jetten MS, Khmelenina VN, Klotz MG, Knief C, Kyrpides N, Op den Camp HJ, Reshetnikov AS, Sakai Y, Shapiro N, Trotsenko YA, Vuilleumier S, Woyke T, Dunfield PF.

Genome Announc. 2015 Jun 11;3(3). pii: e00644-15. doi: 10.1128/genomeA.00644-15.

20.

Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems.

Hamilton R, Kits KD, Ramonovskaya VA, Rozova ON, Yurimoto H, Iguchi H, Khmelenina VN, Sakai Y, Dunfield PF, Klotz MG, Knief C, Op den Camp HJ, Jetten MS, Bringel F, Vuilleumier S, Svenning MM, Shapiro N, Woyke T, Trotsenko YA, Stein LY, Kalyuzhnaya MG.

Genome Announc. 2015 Jun 4;3(3). pii: e00515-15. doi: 10.1128/genomeA.00515-15.

21.

Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil.

Wang X, Sharp CE, Jones GM, Grasby SE, Brady AL, Dunfield PF.

Appl Environ Microbiol. 2015 Jul;81(14):4607-15. doi: 10.1128/AEM.00055-15. Epub 2015 May 1.

22.

Draft Genome Sequence of Methyloferula stellata AR4, an Obligate Methanotroph Possessing Only a Soluble Methane Monooxygenase.

Dedysh SN, Naumoff DG, Vorobev AV, Kyrpides N, Woyke T, Shapiro N, Crombie AT, Murrell JC, Kalyuzhnaya MG, Smirnova AV, Dunfield PF.

Genome Announc. 2015 Mar 5;3(2). pii: e01555-14. doi: 10.1128/genomeA.01555-14.

23.

Methanotrophic bacteria in warm geothermal spring sediments identified using stable-isotope probing.

Sharp CE, Martínez-Lorenzo A, Brady AL, Grasby SE, Dunfield PF.

FEMS Microbiol Ecol. 2014 Oct;90(1):92-102. doi: 10.1111/1574-6941.12375. Epub 2014 Jul 22.

24.

Ether- and ester-bound iso-diabolic acid and other lipids in members of acidobacteria subdivision 4.

Sinninghe Damsté JS, Rijpstra WI, Hopmans EC, Foesel BU, Wüst PK, Overmann J, Tank M, Bryant DA, Dunfield PF, Houghton K, Stott MB.

Appl Environ Microbiol. 2014 Sep;80(17):5207-18. doi: 10.1128/AEM.01066-14. Epub 2014 Jun 13.

25.

Methylocella: a gourmand among methanotrophs.

Dunfield PF, Dedysh SN.

Trends Microbiol. 2014 Jul;22(7):368-9. doi: 10.1016/j.tim.2014.05.004. Epub 2014 May 26.

PMID:
24874563
26.

Distribution and diversity of Verrucomicrobia methanotrophs in geothermal and acidic environments.

Sharp CE, Smirnova AV, Graham JM, Stott MB, Khadka R, Moore TR, Grasby SE, Strack M, Dunfield PF.

Environ Microbiol. 2014 Jun;16(6):1867-78. doi: 10.1111/1462-2920.12454. Epub 2014 Apr 18.

PMID:
24650084
27.

Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes.

Lee KC, Morgan XC, Dunfield PF, Tamas I, McDonald IR, Stott MB.

ISME J. 2014 Jul;8(7):1522-33. doi: 10.1038/ismej.2013.251. Epub 2014 Jan 30.

28.

Humboldt's spa: microbial diversity is controlled by temperature in geothermal environments.

Sharp CE, Brady AL, Sharp GH, Grasby SE, Stott MB, Dunfield PF.

ISME J. 2014 Jun;8(6):1166-74. doi: 10.1038/ismej.2013.237. Epub 2014 Jan 16.

29.

Thermoflavifilum aggregans gen. nov., sp. nov., a thermophilic and slightly halophilic filamentous bacterium from the phylum Bacteroidetes.

Anders H, Dunfield PF, Lagutin K, Houghton KM, Power JF, Mackenzie AD, Vyssotski M, Ryan JL, Hanssen EG, Moreau JW, Stott MB.

Int J Syst Evol Microbiol. 2014 Apr;64(Pt 4):1264-70. doi: 10.1099/ijs.0.057463-0. Epub 2014 Jan 14.

PMID:
24425740
30.

Pyrinomonas methylaliphatogenes gen. nov., sp. nov., a novel group 4 thermophilic member of the phylum Acidobacteria from geothermal soils.

Crowe MA, Power JF, Morgan XC, Dunfield PF, Lagutin K, Rijpstra IC, Vyssotski GN, Sinninghe Damste JS, Houghton KM, Ryan JL, Stott MB.

Int J Syst Evol Microbiol. 2014 Jan;64(Pt 1):220-7. doi: 10.1099/ijs.0.055079-0. Epub 2013 Sep 18. Erratum in: Int J Syst Evol Microbiol. 2014 Mar;64(Pt 3):1074. Rijpstra, W I C [removed]; Vyssotski, G N S [added].

PMID:
24048862
31.

The (d)evolution of methanotrophy in the Beijerinckiaceae--a comparative genomics analysis.

Tamas I, Smirnova AV, He Z, Dunfield PF.

ISME J. 2014 Feb;8(2):369-82. doi: 10.1038/ismej.2013.145. Epub 2013 Aug 29.

32.

Controls on bacterial and archaeal community structure and greenhouse gas production in natural, mined, and restored Canadian peatlands.

Basiliko N, Henry K, Gupta V, Moore TR, Driscoll BT, Dunfield PF.

Front Microbiol. 2013 Jul 31;4:215. doi: 10.3389/fmicb.2013.00215. eCollection 2013.

33.

Metagenomics of hydrocarbon resource environments indicates aerobic taxa and genes to be unexpectedly common.

An D, Caffrey SM, Soh J, Agrawal A, Brown D, Budwill K, Dong X, Dunfield PF, Foght J, Gieg LM, Hallam SJ, Hanson NW, He Z, Jack TR, Klassen J, Konwar KM, Kuatsjah E, Li C, Larter S, Leopatra V, Nesbø CL, Oldenburg T, Pagé AP, Ramos-Padron E, Rochman FF, Saidi-Mehrabad A, Sensen CW, Sipahimalani P, Song YC, Wilson S, Wolbring G, Wong ML, Voordouw G.

Environ Sci Technol. 2013 Sep 17;47(18):10708-17. doi: 10.1021/es4020184. Epub 2013 Aug 26.

34.

Phylogenetic delineation of the novel phylum Armatimonadetes (former candidate division OP10) and definition of two novel candidate divisions.

Lee KC, Herbold CW, Dunfield PF, Morgan XC, McDonald IR, Stott MB.

Appl Environ Microbiol. 2013 Apr;79(7):2484-7. doi: 10.1128/AEM.03333-12. Epub 2013 Feb 1.

35.

Methanotrophic bacteria in oilsands tailings ponds of northern Alberta.

Saidi-Mehrabad A, He Z, Tamas I, Sharp CE, Brady AL, Rochman FF, Bodrossy L, Abell GC, Penner T, Dong X, Sensen CW, Dunfield PF.

ISME J. 2013 May;7(5):908-21. doi: 10.1038/ismej.2012.163. Epub 2012 Dec 20.

36.

Detection of autotrophic verrucomicrobial methanotrophs in a geothermal environment using stable isotope probing.

Sharp CE, Stott MB, Dunfield PF.

Front Microbiol. 2012 Aug 17;3:303. doi: 10.3389/fmicb.2012.00303. eCollection 2012.

37.

Draft genome sequence of the volcano-inhabiting thermoacidophilic methanotroph Methylacidiphilum fumariolicum strain SolV.

Khadem AF, Wieczorek AS, Pol A, Vuilleumier S, Harhangi HR, Dunfield PF, Kalyuzhnaya MG, Murrell JC, Francoijs KJ, Stunnenberg HG, Stein LY, DiSpirito AA, Semrau JD, Lajus A, Médigue C, Klotz MG, Jetten MS, Op den Camp HJ.

J Bacteriol. 2012 Jul;194(14):3729-30. doi: 10.1128/JB.00501-12.

38.

Chryseolinea serpens gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from soil.

Kim JJ, Alkawally M, Brady AL, Rijpstra WI, Sinninghe Damsté JS, Dunfield PF.

Int J Syst Evol Microbiol. 2013 Feb;63(Pt 2):654-60. doi: 10.1099/ijs.0.039404-0. Epub 2012 Apr 27.

PMID:
22544793
39.

Electing a candidate: a speculative history of the bacterial phylum OP10.

Dunfield PF, Tamas I, Lee KC, Morgan XC, McDonald IR, Stott MB.

Environ Microbiol. 2012 Dec;14(12):3069-80. doi: 10.1111/j.1462-2920.2012.02742.x. Epub 2012 Apr 13.

PMID:
22497633
40.

Flavobacterium compostarboris sp. nov., isolated from leaf-and-branch compost, and emended descriptions of Flavobacterium hercynium, Flavobacterium resistens and Flavobacterium johnsoniae.

Kim JJ, Kanaya E, Weon HY, Koga Y, Takano K, Dunfield PF, Kwon SW, Kanaya S.

Int J Syst Evol Microbiol. 2012 Aug;62(Pt 8):2018-24. doi: 10.1099/ijs.0.032920-0. Epub 2011 Oct 21.

PMID:
22021577
41.

Hell's Gate globin I: an acid and thermostable bacterial hemoglobin resembling mammalian neuroglobin.

Teh AH, Saito JA, Baharuddin A, Tuckerman JR, Newhouse JS, Kanbe M, Newhouse EI, Rahim RA, Favier F, Didierjean C, Sousa EH, Stott MB, Dunfield PF, Gonzalez G, Gilles-Gonzalez MA, Najimudin N, Alam M.

FEBS Lett. 2011 Oct 20;585(20):3250-8. doi: 10.1016/j.febslet.2011.09.002. Epub 2011 Sep 9.

42.

Facultative and obligate methanotrophs how to identify and differentiate them.

Dedysh SN, Dunfield PF.

Methods Enzymol. 2011;495:31-44. doi: 10.1016/B978-0-12-386905-0.00003-6.

PMID:
21419913
43.

Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic micro-organism of a novel bacterial class, Chthonomonadetes classis nov., of the newly described phylum Armatimonadetes originally designated candidate division OP10.

Lee KC, Dunfield PF, Morgan XC, Crowe MA, Houghton KM, Vyssotski M, Ryan JL, Lagutin K, McDonald IR, Stott MB.

Int J Syst Evol Microbiol. 2011 Oct;61(Pt 10):2482-90. doi: 10.1099/ijs.0.027235-0. Epub 2010 Nov 19.

PMID:
21097641
44.

Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase.

Vorobev AV, Baani M, Doronina NV, Brady AL, Liesack W, Dunfield PF, Dedysh SN.

Int J Syst Evol Microbiol. 2011 Oct;61(Pt 10):2456-63. doi: 10.1099/ijs.0.028118-0. Epub 2010 Nov 19.

PMID:
21097638
45.

Complete genome sequence of Beijerinckia indica subsp. indica.

Tamas I, Dedysh SN, Liesack W, Stott MB, Alam M, Murrell JC, Dunfield PF.

J Bacteriol. 2010 Sep;192(17):4532-3. doi: 10.1128/JB.00656-10. Epub 2010 Jul 2.

46.

Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2.

Chen Y, Crombie A, Rahman MT, Dedysh SN, Liesack W, Stott MB, Alam M, Theisen AR, Murrell JC, Dunfield PF.

J Bacteriol. 2010 Jul;192(14):3840-1. doi: 10.1128/JB.00506-10. Epub 2010 May 14.

47.

Methylocapsa aurea sp. nov., a facultative methanotroph possessing a particulate methane monooxygenase, and emended description of the genus Methylocapsa.

Dunfield PF, Belova SE, Vorob'ev AV, Cornish SL, Dedysh SN.

Int J Syst Evol Microbiol. 2010 Nov;60(Pt 11):2659-64. doi: 10.1099/ijs.0.020149-0. Epub 2010 Jan 8.

PMID:
20061505
48.

Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia.

Op den Camp HJ, Islam T, Stott MB, Harhangi HR, Hynes A, Schouten S, Jetten MS, Birkeland NK, Pol A, Dunfield PF.

Environ Microbiol Rep. 2009 Oct;1(5):293-306. doi: 10.1111/j.1758-2229.2009.00022.x. Epub 2009 Mar 3.

PMID:
23765882
49.

A reanalysis of phospholipid fatty acids as ecological biomarkers for methanotrophic bacteria.

Bodelier PL, Gillisen MJ, Hordijk K, Damsté JS, Rijpstra WI, Geenevasen JA, Dunfield PF.

ISME J. 2009 May;3(5):606-17. doi: 10.1038/ismej.2009.6. Epub 2009 Feb 5.

PMID:
19194481
50.

Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1.

Saw JH, Mountain BW, Feng L, Omelchenko MV, Hou S, Saito JA, Stott MB, Li D, Zhao G, Wu J, Galperin MY, Koonin EV, Makarova KS, Wolf YI, Rigden DJ, Dunfield PF, Wang L, Alam M.

Genome Biol. 2008;9(11):R161. doi: 10.1186/gb-2008-9-11-r161. Epub 2008 Nov 17.

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