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Computer-assisted planning for minimally invasive anterior two-thirds laser corpus callosotomy: A feasibility study with probabilistic tractography validation.

Vakharia VN, Sparks RE, Vos SB, Bezchlibnyk Y, Mehta AD, Willie JT, Wu C, Sharan A, Ourselin S, Duncan JS.

Neuroimage Clin. 2020 Jan 13;25:102174. doi: 10.1016/j.nicl.2020.102174. [Epub ahead of print]


Regional myocardial strain analysis via 2D speckle tracking echocardiography: validation with sonomicrometry and correlation with regional blood flow in the presence of graded coronary stenoses and dobutamine stress.

Stendahl JC, Parajuli N, Lu A, Boutagy NE, Guerrera N, Alkhalil I, Lin BA, Staib LH, O'Donnell M, Duncan JS, Sinusas AJ.

Cardiovasc Ultrasound. 2020 Jan 15;18(1):2. doi: 10.1186/s12947-019-0183-x.


Hippocampal profiling: Localized magnetic resonance imaging volumetry and T2 relaxometry for hippocampal sclerosis.

Vos SB, Winston GP, Goodkin O, Pemberton HG, Barkhof F, Prados F, Galovic M, Koepp M, Ourselin S, Cardoso MJ, Duncan JS.

Epilepsia. 2019 Dec 24. doi: 10.1111/epi.16416. [Epub ahead of print]


PPP2R2A prostate cancer haploinsufficiency is associated with worse prognosis and a high vulnerability to B55α/PP2A reconstitution that triggers centrosome destabilization.

Zhao Z, Kurimchak A, Nikonova AS, Feiser F, Wasserman JS, Fowle H, Varughese T, Connors M, Johnson K, Makhov P, Lindskog C, Kolenko VM, Golemis EA, Duncan JS, Graña X.

Oncogenesis. 2019 Dec 10;8(12):72. doi: 10.1038/s41389-019-0180-9.


Extracellular pH mapping of liver cancer on a clinical 3T MRI scanner.

Coman D, Peters DC, Walsh JJ, Savic LJ, Huber S, Sinusas AJ, Lin M, Chapiro J, Constable RT, Rothman DL, Duncan JS, Hyder F.

Magn Reson Med. 2020 May;83(5):1553-1564. doi: 10.1002/mrm.28035. Epub 2019 Nov 5.


Learning to see the invisible: A data-driven approach to finding the underlying patterns of abnormality in visually normal brain magnetic resonance images in patients with temporal lobe epilepsy.

Bennett OF, Kanber B, Hoskote C, Cardoso MJ, Ourselin S, Duncan JS, Winston GP.

Epilepsia. 2019 Dec;60(12):2499-2507. doi: 10.1111/epi.16380. Epub 2019 Nov 6.


Ovine infectious keratoconjunctivitis in sheep: the farmer's perspective.

Williams HJ, Duncan JS, Fisher SN, Coates A, Stokes JE, Gillespie A.

Vet Rec Open. 2019 Oct 8;6(1):e000321. doi: 10.1136/vetreco-2018-000321. eCollection 2019.


The Effect of Vascular Segmentation Methods on Stereotactic Trajectory Planning for Drug-Resistant Focal Epilepsy: A Retrospective Cohort Study.

Vakharia VN, Sparks R, Vos SB, McEvoy AW, Miserocchi A, Ourselin S, Duncan JS.

World Neurosurg X. 2019 Aug 5;4:100057. doi: 10.1016/j.wnsx.2019.100057. eCollection 2019 Oct.


Molecular Imaging of Extracellular Tumor pH to Reveal Effects of Locoregional Therapy on Liver Cancer Microenvironment.

Savic LJ, Schobert IT, Peters D, Walsh JJ, Laage-Gaupp FM, Hamm CA, Tritz N, Doemel LA, Lin M, Sinusas A, Schlachter T, Duncan JS, Hyder F, Coman D, Chapiro J.

Clin Cancer Res. 2020 Jan 15;26(2):428-438. doi: 10.1158/1078-0432.CCR-19-1702. Epub 2019 Oct 3.


Naming fMRI predicts the effect of temporal lobe resection on language decline.

Trimmel K, van Graan LA, Gonzálvez GG, Haag A, Caciagli L, Vos SB, Bonelli S, Sidhu M, Thompson PJ, Koepp MJ, Duncan JS.

Ann Clin Transl Neurol. 2019 Nov;6(11):2186-2196. doi: 10.1002/acn3.50911. Epub 2019 Oct 2.


Computer-Assisted Planning for Stereoelectroencephalography (SEEG).

Vakharia VN, Sparks R, Miserocchi A, Vos SB, O'Keeffe A, Rodionov R, McEvoy AW, Ourselin S, Duncan JS.

Neurotherapeutics. 2019 Oct;16(4):1183-1197. doi: 10.1007/s13311-019-00774-9.


Brain imaging in epilepsy.

Duncan JS.

Pract Neurol. 2019 Oct;19(5):438-443. doi: 10.1136/practneurol-2018-002180. Epub 2019 Aug 16.


Multicenter validation of automated trajectories for selective laser amygdalohippocampectomy.

Vakharia VN, Sparks RE, Li K, O'Keeffe AG, Pérez-García F, França LGS, Ko AL, Wu C, Aronson JP, Youngerman BE, Sharan A, McKhann G 2nd, Ourselin S, Duncan JS.

Epilepsia. 2019 Sep;60(9):1949-1959. doi: 10.1111/epi.16307. Epub 2019 Aug 7.


Computer-Assisted Versus Manual Planning for Stereotactic Brain Biopsy: A Retrospective Comparative Pilot Study.

Marcus HJ, Vakharia VN, Sparks R, Rodionov R, Kitchen N, McEvoy AW, Miserocchi A, Thorne L, Ourselin S, Duncan JS.

Oper Neurosurg (Hagerstown). 2019 Aug 5. pii: opz177. doi: 10.1093/ons/opz177. [Epub ahead of print]


Abnormal hippocampal structure and function in juvenile myoclonic epilepsy and unaffected siblings.

Caciagli L, Wandschneider B, Xiao F, Vollmar C, Centeno M, Vos SB, Trimmel K, Sidhu MK, Thompson PJ, Winston GP, Duncan JS, Koepp MJ.

Brain. 2019 Sep 1;142(9):2670-2687. doi: 10.1093/brain/awz215.


Stereoelectroencephalography electrode placement: Detection of blood vessel conflicts.

Li K, Vakharia VN, Sparks R, Rodionov R, Vos SB, McEvoy AW, Miserocchi A, Wang M, Ourselin S, Duncan JS.

Epilepsia. 2019 Sep;60(9):1942-1948. doi: 10.1111/epi.16294. Epub 2019 Jul 22.


Topologically correct central projections of tetrapod inner ear afferents require Fzd3.

Duncan JS, Fritzsch B, Houston DW, Ketchum EM, Kersigo J, Deans MR, Elliott KL.

Sci Rep. 2019 Jul 16;9(1):10298. doi: 10.1038/s41598-019-46553-6.


Discoidin Domain Receptor 1 (DDR1) tyrosine kinase is upregulated in PKD kidneys but does not play a role in the pathogenesis of polycystic kidney disease.

Soomro I, Hong A, Li Z, Duncan JS, Skolnik EY.

PLoS One. 2019 Jul 1;14(7):e0211670. doi: 10.1371/journal.pone.0211670. eCollection 2019.


Progressive Cortical Thinning in Patients With Focal Epilepsy.

Galovic M, van Dooren VQH, Postma T, Vos SB, Caciagli L, Borzì G, Rosillo JC, Vuong KA, de Tisi J, Nachev P, Duncan JS, Koepp MJ.

JAMA Neurol. 2019 Jul 1. doi: 10.1001/jamaneurol.2019.1708. [Epub ahead of print]


Automated fiber tract reconstruction for surgery planning: Extensive validation in language-related white matter tracts.

Mancini M, Vos SB, Vakharia VN, O'Keeffe AG, Trimmel K, Barkhof F, Dorfer C, Soman S, Winston GP, Wu C, Duncan JS, Sparks R, Ourselin S.

Neuroimage Clin. 2019;23:101883. doi: 10.1016/j.nicl.2019.101883. Epub 2019 May 28.


Increasing the accuracy of 3D EEG implantations.

Rodionov R, O'Keeffe A, Nowell M, Rizzi M, Vakharia VN, Wykes V, Eriksson SH, Miserocchi A, McEvoy AW, Ourselin S, Duncan JS.

J Neurosurg. 2019 May 17:1-8. doi: 10.3171/2019.2.JNS183313. [Epub ahead of print]


Deep learning for liver tumor diagnosis part II: convolutional neural network interpretation using radiologic imaging features.

Wang CJ, Hamm CA, Savic LJ, Ferrante M, Schobert I, Schlachter T, Lin M, Weinreb JC, Duncan JS, Chapiro J, Letzen B.

Eur Radiol. 2019 Jul;29(7):3348-3357. doi: 10.1007/s00330-019-06214-8. Epub 2019 May 15.


Neuronal Migration Generates New Populations of Neurons That Develop Unique Connections, Physiological Properties and Pathologies.

Fritzsch B, Elliott KL, Pavlinkova G, Duncan JS, Hansen MR, Kersigo JM.

Front Cell Dev Biol. 2019 Apr 24;7:59. doi: 10.3389/fcell.2019.00059. eCollection 2019. Review.


Flow network tracking for spatiotemporal and periodic point matching: Applied to cardiac motion analysis.

Parajuli N, Lu A, Ta K, Stendahl J, Boutagy N, Alkhalil I, Eberle M, Jeng GS, Zontak M, O'Donnell M, Sinusas AJ, Duncan JS.

Med Image Anal. 2019 Jul;55:116-135. doi: 10.1016/ Epub 2019 Apr 18.


Intrinsic Resistance to MEK Inhibition through BET Protein-Mediated Kinome Reprogramming in NF1-Deficient Ovarian Cancer.

Kurimchak AM, Shelton C, Herrera-Montávez C, Duncan KE, Chernoff J, Duncan JS.

Mol Cancer Res. 2019 Aug;17(8):1721-1734. doi: 10.1158/1541-7786.MCR-18-1332. Epub 2019 May 1.


Deep learning for liver tumor diagnosis part I: development of a convolutional neural network classifier for multi-phasic MRI.

Hamm CA, Wang CJ, Savic LJ, Ferrante M, Schobert I, Schlachter T, Lin M, Duncan JS, Weinreb JC, Chapiro J, Letzen B.

Eur Radiol. 2019 Jul;29(7):3338-3347. doi: 10.1007/s00330-019-06205-9. Epub 2019 Apr 23.


Arterial Spin Labeling Reveals Disrupted Brain Networks and Functional Connectivity in Drug-Resistant Temporal Epilepsy.

Boscolo Galazzo I, Storti SF, Barnes A, De Blasi B, De Vita E, Koepp M, Duncan JS, Groves A, Pizzini FB, Menegaz G, Fraioli F.

Front Neuroinform. 2019 Mar 6;12:101. doi: 10.3389/fninf.2018.00101. eCollection 2018.


Neuroimaging and connectomics of drug-resistant epilepsy at multiple scales: From focal lesions to macroscale networks.

Tavakol S, Royer J, Lowe AJ, Bonilha L, Tracy JI, Jackson GD, Duncan JS, Bernasconi A, Bernasconi N, Bernhardt BC.

Epilepsia. 2019 Apr;60(4):593-604. doi: 10.1111/epi.14688. Epub 2019 Mar 19.


Learning Generalizable Recurrent Neural Networks from Small Task-fMRI Datasets.

Dvornek NC, Yang D, Ventola P, Duncan JS.

Med Image Comput Comput Assist Interv. 2018 Sep;11072:329-337. doi: 10.1007/978-3-030-00931-1_38. Epub 2018 Sep 13.


Cerebellar, limbic, and midbrain volume alterations in sudden unexpected death in epilepsy.

Allen LA, Vos SB, Kumar R, Ogren JA, Harper RK, Winston GP, Balestrini S, Wandschneider B, Scott CA, Ourselin S, Duncan JS, Lhatoo SD, Harper RM, Diehl B.

Epilepsia. 2019 Apr;60(4):718-729. doi: 10.1111/epi.14689. Epub 2019 Mar 14.


Association of Piriform Cortex Resection With Surgical Outcomes in Patients With Temporal Lobe Epilepsy.

Galovic M, Baudracco I, Wright-Goff E, Pillajo G, Nachev P, Wandschneider B, Woermann F, Thompson P, Baxendale S, McEvoy AW, Nowell M, Mancini M, Vos SB, Winston GP, Sparks R, Prados F, Miserocchi A, de Tisi J, Van Graan LA, Rodionov R, Wu C, Alizadeh M, Kozlowski L, Sharan AD, Kini LG, Davis KA, Litt B, Ourselin S, Moshé SL, Sander JWA, Löscher W, Duncan JS, Koepp MJ.

JAMA Neurol. 2019 Jun 1;76(6):690-700. doi: 10.1001/jamaneurol.2019.0204.


Efficient Two-Pass 3-D Speckle Tracking for Ultrasound Imaging.

Jeng GS, Zontak M, Parajuli N, Lu A, Ta K, Sinusas AJ, Duncan JS, O'Donnell M.

IEEE Access. 2018;6:17415-17428. doi: 10.1109/ACCESS.2018.2815522. Epub 2018 Mar 13.


Optimizing Trajectories for Cranial Laser Interstitial Thermal Therapy Using Computer-Assisted Planning: A Machine Learning Approach.

Li K, Vakharia VN, Sparks R, França LGS, Granados A, McEvoy AW, Miserocchi A, Wang M, Ourselin S, Duncan JS.

Neurotherapeutics. 2019 Jan;16(1):182-191. doi: 10.1007/s13311-018-00693-1.


Predicting Treatment Response to Image-Guided Therapies Using Machine Learning: An Example for Trans-Arterial Treatment of Hepatocellular Carcinoma.

Abajian A, Murali N, Savic LJ, Laage-Gaupp FM, Nezami N, Duncan JS, Schlachter T, Lin M, Geschwind JF, Chapiro J.

J Vis Exp. 2018 Oct 10;(140). doi: 10.3791/58382.


Comment on " In Vivo [18F]GE-179 Brain Signal Does Not Show NMDA-Specific Modulation with Drug Challenges in Rodents and Nonhuman Primates".

McGinnity CJ, Årstad E, Beck K, Brooks DJ, Coles JP, Duncan JS, Galovic M, Hinz R, Hirani E, Howes OD, Jones PA, Koepp MJ, Luo F, Riaño Barros DA, Singh N, Trigg W, Hammers A.

ACS Chem Neurosci. 2019 Jan 16;10(1):768-772. doi: 10.1021/acschemneuro.8b00246. Epub 2018 Oct 11.



Dvornek NC, Ventola P, Duncan JS.

Proc IEEE Int Symp Biomed Imaging. 2018 Apr;2018:725-728. doi: 10.1109/ISBI.2018.8363676. Epub 2018 May 24.


Pharmacological management of post-traumatic seizures in adults: current practice patterns in the UK and the Republic of Ireland.

Mee H, Kolias AG, Chari A, Ercole A, Lecky F, Turner C, Tudur-Smith C, Coles J, Anwar F, Belli A, Manford M, Ham T, McMahon C, Bulters D, Uff C, Duncan JS, Wilson MH, Marson AG, Hutchinson PJ.

Acta Neurochir (Wien). 2019 Mar;161(3):457-464. doi: 10.1007/s00701-018-3683-9. Epub 2018 Oct 1.


Survey to determine the farm-level impact of Schmallenberg virus during the 2016-2017 United Kingdom lambing season.

Stokes JE, Tarlinton RE, Lovatt F, Baylis M, Carson A, Duncan JS.

Vet Rec. 2018 Dec 8;183(22):690. doi: 10.1136/vr.104866. Epub 2018 Sep 26.


Evolutionary and Developmental Biology Provide Insights Into the Regeneration of Organ of Corti Hair Cells.

Elliott KL, Fritzsch B, Duncan JS.

Front Cell Neurosci. 2018 Aug 8;12:252. doi: 10.3389/fncel.2018.00252. eCollection 2018. Review.


The impact of mapping interictal discharges using EEG-fMRI on the epilepsy presurgical clinical decision making process: A prospective study.

Markoula S, Chaudhary UJ, Perani S, De Ciantis A, Yadee T, Duncan JS, Diehl B, McEvoy AW, Lemieux L.

Seizure. 2018 Oct;61:30-37. doi: 10.1016/j.seizure.2018.07.016. Epub 2018 Jul 20.


The impact of brain-derived neurotrophic factor Val66Met polymorphism on cognition and functional brain networks in patients with intractable partial epilepsy.

Sidhu MK, Thompson PJ, Wandschneider B, Foulkes A, de Tisi J, Stretton J, Perona M, Thom M, Bonelli SB, Burdett J, Williams E, Duncan JS, Matarin M.

CNS Neurosci Ther. 2019 Feb;25(2):223-232. doi: 10.1111/cns.13003. Epub 2018 Jun 27.


Left temporal lobe language network connectivity in temporal lobe epilepsy.

Trimmel K, van Graan AL, Caciagli L, Haag A, Koepp MJ, Thompson PJ, Duncan JS.

Brain. 2018 Aug 1;141(8):2406-2418. doi: 10.1093/brain/awy164.


Effects of carbamazepine and lamotrigine on functional magnetic resonance imaging cognitive networks.

Xiao F, Caciagli L, Wandschneider B, Sander JW, Sidhu M, Winston G, Burdett J, Trimmel K, Hill A, Vollmar C, Vos SB, Ourselin S, Thompson PJ, Zhou D, Duncan JS, Koepp MJ.

Epilepsia. 2018 Jul;59(7):1362-1371. doi: 10.1111/epi.14448. Epub 2018 Jun 13.


Simplifying [18F]GE-179 PET: are both arterial blood sampling and 90-min acquisitions essential?

McGinnity CJ, Riaño Barros DA, Trigg W, Brooks DJ, Hinz R, Duncan JS, Koepp MJ, Hammers A.

EJNMMI Res. 2018 Jun 11;8(1):46. doi: 10.1186/s13550-018-0396-2.


The impact of epilepsy surgery on the structural connectome and its relation to outcome.

Taylor PN, Sinha N, Wang Y, Vos SB, de Tisi J, Miserocchi A, McEvoy AW, Winston GP, Duncan JS.

Neuroimage Clin. 2018 Jan 31;18:202-214. doi: 10.1016/j.nicl.2018.01.028. eCollection 2018.


Neuroimaging in epilepsy.

Sidhu MK, Duncan JS, Sander JW.

Curr Opin Neurol. 2018 Aug;31(4):371-378. doi: 10.1097/WCO.0000000000000568. Review.


Automatic segmentation of stereoelectroencephalography (SEEG) electrodes post-implantation considering bending.

Granados A, Vakharia V, Rodionov R, Schweiger M, Vos SB, O'Keeffe AG, Li K, Wu C, Miserocchi A, McEvoy AW, Clarkson MJ, Duncan JS, Sparks R, Ourselin S.

Int J Comput Assist Radiol Surg. 2018 Jun;13(6):935-946. doi: 10.1007/s11548-018-1740-8. Epub 2018 May 7.


Computer-assisted planning for the insertion of stereoelectroencephalography electrodes for the investigation of drug-resistant focal epilepsy: an external validation study.

Vakharia VN, Sparks R, Rodionov R, Vos SB, Dorfer C, Miller J, Nilsson D, Tisdall M, Wolfsberger S, McEvoy AW, Miserocchi A, Winston GP, O'Keeffe AG, Ourselin S, Duncan JS.

J Neurosurg. 2018 Apr 1:1-10. doi: 10.3171/2017.10.JNS171826. [Epub ahead of print]


A spontaneous binge-like eating model in mice using unpredictable once weekly access to palatable diets.

Murphy M, Dijkstra DJ, Duncan JS, Horgan GW, Mercer JG.

Appetite. 2018 Jul 1;126:137-146. doi: 10.1016/j.appet.2018.04.002. Epub 2018 Apr 6.


Predicting Treatment Response to Intra-arterial Therapies for Hepatocellular Carcinoma with the Use of Supervised Machine Learning-An Artificial Intelligence Concept.

Abajian A, Murali N, Savic LJ, Laage-Gaupp FM, Nezami N, Duncan JS, Schlachter T, Lin M, Geschwind JF, Chapiro J.

J Vasc Interv Radiol. 2018 Jun;29(6):850-857.e1. doi: 10.1016/j.jvir.2018.01.769. Epub 2018 Mar 14.

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