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Items: 42

1.

Genome Sequence of a Plant Growth-Promoting Rhizobacterium, Pseudomonas sp. Strain 31-12.

Hynes RK, Dumonceaux TJ, Kangsopa J, Town JR.

Microbiol Resour Announc. 2018 Aug 16;7(6). pii: e00947-18. doi: 10.1128/MRA.00947-18. eCollection 2018 Aug.

2.

Genome Sequence of a Plant-Pathogenic Bacterium, "Candidatus Phytoplasma asteris" Strain TW1.

Town JR, Wist T, Perez-Lopez E, Olivier CY, Dumonceaux TJ.

Microbiol Resour Announc. 2018 Sep 27;7(12). pii: e01109-18. doi: 10.1128/MRA.01109-18. eCollection 2018 Sep.

3.

A novel 'Candidatus Phytoplasma asteris' subgroup 16SrI-(E/AI)AI associated with blueberry stunt disease in eastern Canada.

Perez-Lopez E, Vincent C, Moreau D, Hammond C, Town J, Dumonceaux TJ.

Int J Syst Evol Microbiol. 2019 Feb;69(2):322-332. doi: 10.1099/ijsem.0.003100. Epub 2018 Nov 15.

PMID:
30431416
4.

Molecular identification and characterization of the new 16SrIX-J and cpn60 UT IX-J phytoplasma subgroup associated with chicory bushy stunt disease in Saudi Arabia.

Pérez-López E, Omar AF, Al-Jamhan KM, Dumonceaux TJ.

Int J Syst Evol Microbiol. 2018 Feb;68(2):518-522. doi: 10.1099/ijsem.0.002530. Epub 2018 Jan 5.

PMID:
29303692
5.

Detection and Typing of "Candidatus Phytoplasma " spp. in Host DNA Extracts Using Oligonucleotide-Coupled Fluorescent Microspheres.

Pérez-López E, Hammond C, Olivier C, Dumonceaux TJ.

Methods Mol Biol. 2017;1616:121-136. doi: 10.1007/978-1-4939-7037-7_7.

PMID:
28600765
6.

Pretreatment of Hardwood and Miscanthus with Trametes versicolor for Bioenergy Conversion and Densification Strategies.

Kalinoski RM, Flores HD, Thapa S, Tuegel ER, Bilek MA, Reyes-Mendez EY, West MJ, Dumonceaux TJ, Canam T.

Appl Biochem Biotechnol. 2017 Dec;183(4):1401-1413. doi: 10.1007/s12010-017-2507-3. Epub 2017 May 20.

PMID:
28528383
7.

Molecular diagnostic assays based on cpn60 UT sequences reveal the geographic distribution of subgroup 16SrXIII-(A/I)I phytoplasma in Mexico.

Pérez-López E, Rodríguez-Martínez D, Olivier CY, Luna-Rodríguez M, Dumonceaux TJ.

Sci Rep. 2017 Apr 19;7(1):950. doi: 10.1038/s41598-017-00895-1.

8.

Quantitative molecular diagnostic assays of grain washes for Claviceps purpurea are correlated with visual determinations of ergot contamination.

Comte A, Gräfenhan T, Links MG, Hemmingsen SM, Dumonceaux TJ.

PLoS One. 2017 Mar 3;12(3):e0173495. doi: 10.1371/journal.pone.0173495. eCollection 2017.

9.

Phytoplasma classification and phylogeny based on in silico and in vitro RFLP analysis of cpn60 universal target sequences.

Pérez-López E, Olivier CY, Luna-Rodríguez M, Dumonceaux TJ.

Int J Syst Evol Microbiol. 2016 Dec;66(12):5600-5613. doi: 10.1099/ijsem.0.001501. Epub 2016 Sep 22.

10.

Detection and identification of the heterogeneous novel subgroup 16SrXIII-(A/I)I phytoplasma associated with strawberry green petal disease and Mexican periwinkle virescence.

Pérez-López E, Dumonceaux TJ.

Int J Syst Evol Microbiol. 2016 Nov;66(11):4406-4415. doi: 10.1099/ijsem.0.001365. Epub 2016 Aug 2.

PMID:
27488659
11.

High-Quality Draft Genome Sequence of Bacillus subtilis Strain WAUSV36.

Town J, Audy P, Boyetchko SM, Dumonceaux TJ.

Genome Announc. 2016 Jun 23;4(3). pii: e00586-16. doi: 10.1128/genomeA.00586-16.

12.

High-Quality Draft Genome Sequence of Arthrobacter sp. OY3WO11, a Strain That Inhibits the Growth of Phytophthora infestans.

Town J, Audy P, Boyetchko SM, Dumonceaux TJ.

Genome Announc. 2016 Jun 23;4(3). pii: e00585-16. doi: 10.1128/genomeA.00585-16.

13.

High-Quality Draft Genome Sequence of Biocontrol Strain Pantoea sp. OXWO6B1.

Town J, Audy P, Boyetchko SM, Dumonceaux TJ.

Genome Announc. 2016 Jun 23;4(3). pii: e00582-16. doi: 10.1128/genomeA.00582-16.

14.

Genome Sequence of Pseudomonas chlororaphis Strain 189.

Town J, Audy P, Boyetchko SM, Dumonceaux TJ.

Genome Announc. 2016 Jun 23;4(3). pii: e00581-16. doi: 10.1128/genomeA.00581-16.

15.

High-Quality Draft Genome Sequences of Pantoea agglomerans Isolates Exhibiting Antagonistic Interactions with Wheat Seed-Associated Fungi.

Town J, Dumonceaux TJ.

Genome Announc. 2016 Jun 16;4(3). pii: e00511-16. doi: 10.1128/genomeA.00511-16.

16.

Improved High-Quality Draft Genome Sequence of Pseudomonas fluorescens KENGFT3.

Town J, Cui N, Audy P, Boyetchko S, Dumonceaux TJ.

Genome Announc. 2016 May 26;4(3). pii: e00428-16. doi: 10.1128/genomeA.00428-16.

17.

The underestimated diversity of phytoplasmas in Latin America.

Pérez-López E, Luna-Rodríguez M, Olivier CY, Dumonceaux TJ.

Int J Syst Evol Microbiol. 2016 Jan;66(1):492-513. doi: 10.1099/ijsem.0.000726. Epub 2015 Oct 29.

PMID:
26519050
18.

Laboratory-scale bioaugmentation relieves acetate accumulation and stimulates methane production in stalled anaerobic digesters.

Town JR, Dumonceaux TJ.

Appl Microbiol Biotechnol. 2016 Jan;100(2):1009-17. doi: 10.1007/s00253-015-7058-3. Epub 2015 Oct 19.

19.

Molecular diagnostic tools for detection and differentiation of phytoplasmas based on chaperonin-60 reveal differences in host plant infection patterns.

Dumonceaux TJ, Green M, Hammond C, Perez E, Olivier C.

PLoS One. 2014 Dec 31;9(12):e116039. doi: 10.1371/journal.pone.0116039. eCollection 2014.

20.
21.

Simultaneous profiling of seed-associated bacteria and fungi reveals antagonistic interactions between microorganisms within a shared epiphytic microbiome on Triticum and Brassica seeds.

Links MG, Demeke T, Gräfenhan T, Hill JE, Hemmingsen SM, Dumonceaux TJ.

New Phytol. 2014 Apr;202(2):542-53. doi: 10.1111/nph.12693. Epub 2014 Jan 21.

22.

Molecular characterization of anaerobic digester microbial communities identifies microorganisms that correlate to reactor performance.

Town JR, Links MG, Fonstad TA, Dumonceaux TJ.

Bioresour Technol. 2014 Jan;151:249-57. doi: 10.1016/j.biortech.2013.10.070. Epub 2013 Oct 30.

PMID:
24246480
23.

Characterization and genus identification of rhizobial symbionts from Caragana arborescens in western Canada.

Moukoumi J, Hynes RK, Dumonceaux TJ, Town J, Bélanger N.

Can J Microbiol. 2013 Jun;59(6):399-406. doi: 10.1139/cjm-2013-0158. Epub 2013 Apr 22.

PMID:
23750954
24.

Differential metabolite profiles and salinity tolerance between two genetically related brown-seeded and yellow-seeded Brassica carinata lines.

Canam T, Li X, Holowachuk J, Yu M, Xia J, Mandal R, Krishnamurthy R, Bouatra S, Sinelnikov I, Yu B, Grenkow L, Wishart DS, Steppuhn H, Falk KC, Dumonceaux TJ, Gruber MY.

Plant Sci. 2013 Jan;198:17-26. doi: 10.1016/j.plantsci.2012.09.011. Epub 2012 Oct 4.

PMID:
23199683
25.

The chaperonin-60 universal target is a barcode for bacteria that enables de novo assembly of metagenomic sequence data.

Links MG, Dumonceaux TJ, Hemmingsen SM, Hill JE.

PLoS One. 2012;7(11):e49755. doi: 10.1371/journal.pone.0049755. Epub 2012 Nov 26.

26.

Selection, phenotyping and identification of acid and hydrogen peroxide producing bacteria from vaginal samples of Canadian and East African women.

Schellenberg JJ, Dumonceaux TJ, Hill JE, Kimani J, Jaoko W, Wachihi C, Mungai JN, Lane M, Fowke KR, Ball TB, Plummer FA.

PLoS One. 2012;7(7):e41217. doi: 10.1371/journal.pone.0041217. Epub 2012 Jul 23.

27.

Isolates of Thermoanaerobacter thermohydrosulfuricus from decaying wood compost display genetic and phenotypic microdiversity.

Verbeke TJ, Dumonceaux TJ, Wushke S, Cicek N, Levin DB, Sparling R.

FEMS Microbiol Ecol. 2011 Dec;78(3):473-87. doi: 10.1111/j.1574-6941.2011.01181.x. Epub 2011 Aug 30.

28.

Multiplex detection of bacteria in complex clinical and environmental samples using oligonucleotide-coupled fluorescent microspheres.

Dumonceaux TJ, Town JR, Hill JE, Chaban BL, Hemmingsen SM.

J Vis Exp. 2011 Oct 23;(56). pii: 3344. doi: 10.3791/3344.

29.

Biological pretreatment with a cellobiose dehydrogenase-deficient strain of Trametes versicolor enhances the biofuel potential of canola straw.

Canam T, Town JR, Tsang A, McAllister TA, Dumonceaux TJ.

Bioresour Technol. 2011 Nov;102(21):10020-7. doi: 10.1016/j.biortech.2011.08.045. Epub 2011 Aug 17.

PMID:
21903381
30.

Molecular definition of vaginal microbiota in East African commercial sex workers.

Schellenberg JJ, Links MG, Hill JE, Dumonceaux TJ, Kimani J, Jaoko W, Wachihi C, Mungai JN, Peters GA, Tyler S, Graham M, Severini A, Fowke KR, Ball TB, Plummer FA.

Appl Environ Microbiol. 2011 Jun;77(12):4066-74. doi: 10.1128/AEM.02943-10. Epub 2011 Apr 29.

31.

Pyrosequencing of chaperonin-60 (cpn60) amplicons as a means of determining microbial community composition.

Schellenberg J, Links MG, Hill JE, Hemmingsen SM, Peters GA, Dumonceaux TJ.

Methods Mol Biol. 2011;733:143-58. doi: 10.1007/978-1-61779-089-8_10.

PMID:
21431768
32.

Predicting relatedness of bacterial genomes using the chaperonin-60 universal target (cpn60 UT): application to Thermoanaerobacter species.

Verbeke TJ, Sparling R, Hill JE, Links MG, Levin D, Dumonceaux TJ.

Syst Appl Microbiol. 2011 May;34(3):171-9. doi: 10.1016/j.syapm.2010.11.019. Epub 2011 Mar 9.

PMID:
21392917
33.

Multiplex detection of bacteria associated with normal microbiota and with bacterial vaginosis in vaginal swabs by use of oligonucleotide-coupled fluorescent microspheres.

Dumonceaux TJ, Schellenberg J, Goleski V, Hill JE, Jaoko W, Kimani J, Money D, Ball TB, Plummer FA, Severini A.

J Clin Microbiol. 2009 Dec;47(12):4067-77. doi: 10.1128/JCM.00112-09. Epub 2009 Sep 30.

34.

Pyrosequencing of the chaperonin-60 universal target as a tool for determining microbial community composition.

Schellenberg J, Links MG, Hill JE, Dumonceaux TJ, Peters GA, Tyler S, Ball TB, Severini A, Plummer FA.

Appl Environ Microbiol. 2009 May;75(9):2889-98. doi: 10.1128/AEM.01640-08. Epub 2009 Mar 6.

35.

Internally controlled triplex quantitative PCR assay for human polyomaviruses JC and BK.

Dumonceaux TJ, Mesa C, Severini A.

J Clin Microbiol. 2008 Sep;46(9):2829-36. doi: 10.1128/JCM.00844-08. Epub 2008 Jul 9.

36.

Molecular characterization of microbial communities in Canadian pulp and paper activated sludge and quantification of a novel Thiothrix eikelboomii-like bulking filament.

Dumonceaux TJ, Hill JE, Pelletier CP, Paice MG, Van Kessel AG, Hemmingsen SM.

Can J Microbiol. 2006 May;52(5):494-500.

PMID:
16699576
37.

Characterization of intestinal microbiota and response to dietary virginiamycin supplementation in the broiler chicken.

Dumonceaux TJ, Hill JE, Hemmingsen SM, Van Kessel AG.

Appl Environ Microbiol. 2006 Apr;72(4):2815-23.

38.

The effect of hen-egg antibodies on Clostridium perfringens colonization in the gastrointestinal tract of broiler chickens.

Wilkie DC, Van Kessel AG, Dumonceaux TJ, Drew MD.

Prev Vet Med. 2006 Jun 16;74(4):279-92. Epub 2006 Jan 23.

PMID:
16430980
39.

Enumeration of specific bacterial populations in complex intestinal communities using quantitative PCR based on the chaperonin-60 target.

Dumonceaux TJ, Hill JE, Briggs SA, Amoako KK, Hemmingsen SM, Van Kessel AG.

J Microbiol Methods. 2006 Jan;64(1):46-62. Epub 2005 Aug 19.

PMID:
16112762
40.

Comparison of ileum microflora of pigs fed corn-, wheat-, or barley-based diets by chaperonin-60 sequencing and quantitative PCR.

Hill JE, Hemmingsen SM, Goldade BG, Dumonceaux TJ, Klassen J, Zijlstra RT, Goh SH, Van Kessel AG.

Appl Environ Microbiol. 2005 Feb;71(2):867-75.

41.

Cloning and analysis of Pycnoporus cinnabarinus cellobiose dehydrogenase.

Moukha SM, Dumonceaux TJ, Record E, Archibald FS.

Gene. 1999 Jun 24;234(1):23-33.

PMID:
10393235
42.

Cloning and sequencing of a gene encoding cellobiose dehydrogenase from Trametes versicolor.

Dumonceaux TJ, Bartholomew KA, Charles TC, Moukha SM, Archibald FS.

Gene. 1998 Apr 14;210(2):211-9.

PMID:
9573367

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