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Items: 28

1.

Whole-Genome Analysis of Introgression Between the Spotted Owl and Barred Owl (Strix occidentalis and Strix varia, Respectively; Aves: Strigidae) in Western North America.

Hanna ZR, Dumbacher JP, Bowie RCK, Henderson JB, Wall JD.

G3 (Bethesda). 2018 Oct 24. pii: g3.200754.2018. doi: 10.1534/g3.118.200754. [Epub ahead of print]

2.

Taxonomy based on science is necessary for global conservation.

Thomson SA, Pyle RL, Ahyong ST, Alonso-Zarazaga M, Ammirati J, Araya JF, Ascher JS, Audisio TL, Azevedo-Santos VM, Bailly N, Baker WJ, Balke M, Barclay MVL, Barrett RL, Benine RC, Bickerstaff JRM, Bouchard P, Bour R, Bourgoin T, Boyko CB, Breure ASH, Brothers DJ, Byng JW, Campbell D, Ceríaco LMP, Cernák I, Cerretti P, Chang CH, Cho S, Copus JM, Costello MJ, Cseh A, Csuzdi C, Culham A, D'Elía G, d'Udekem d'Acoz C, Daneliya ME, Dekker R, Dickinson EC, Dickinson TA, van Dijk PP, Dijkstra KB, Dima B, Dmitriev DA, Duistermaat L, Dumbacher JP, Eiserhardt WL, Ekrem T, Evenhuis NL, Faille A, Fernández-Triana JL, Fiesler E, Fishbein M, Fordham BG, Freitas AVL, Friol NR, Fritz U, Frøslev T, Funk VA, Gaimari SD, Garbino GST, Garraffoni ARS, Geml J, Gill AC, Gray A, Grazziotin FG, Greenslade P, Gutiérrez EE, Harvey MS, Hazevoet CJ, He K, He X, Helfer S, Helgen KM, van Heteren AH, Hita Garcia F, Holstein N, Horváth MK, Hovenkamp PH, Hwang WS, Hyvönen J, Islam MB, Iverson JB, Ivie MA, Jaafar Z, Jackson MD, Jayat JP, Johnson NF, Kaiser H, Klitgård BB, Knapp DG, Kojima JI, Kõljalg U, Kontschán J, Krell FT, Krisai-Greilhuber I, Kullander S, Latella L, Lattke JE, Lencioni V, Lewis GP, Lhano MG, Lujan NK, Luksenburg JA, Mariaux J, Marinho-Filho J, Marshall CJ, Mate JF, McDonough MM, Michel E, Miranda VFO, Mitroiu MD, Molinari J, Monks S, Moore AJ, Moratelli R, Murányi D, Nakano T, Nikolaeva S, Noyes J, Ohl M, Oleas NH, Orrell T, Páll-Gergely B, Pape T, Papp V, Parenti LR, Patterson D, Pavlinov IY, Pine RH, Poczai P, Prado J, Prathapan D, Rabeler RK, Randall JE, Rheindt FE, Rhodin AGJ, Rodríguez SM, Rogers DC, Roque FO, Rowe KC, Ruedas LA, Salazar-Bravo J, Salvador RB, Sangster G, Sarmiento CE, Schigel DS, Schmidt S, Schueler FW, Segers H, Snow N, Souza-Dias PGB, Stals R, Stenroos S, Stone RD, Sturm CF, Štys P, Teta P, Thomas DC, Timm RM, Tindall BJ, Todd JA, Triebel D, Valdecasas AG, Vizzini A, Vorontsova MS, de Vos JM, Wagner P, Watling L, Weakley A, Welter-Schultes F, Whitmore D, Wilding N, Will K, Williams J, Wilson K, Winston JE, Wüster W, Yanega D, Yeates DK, Zaher H, Zhang G, Zhang ZQ, Zhou HZ.

PLoS Biol. 2018 Mar 14;16(3):e2005075. doi: 10.1371/journal.pbio.2005075. eCollection 2018 Mar. No abstract available.

3.
4.

Northern Spotted Owl (Strix occidentalis caurina) Genome: Divergence with the Barred Owl (Strix varia) and Characterization of Light-Associated Genes.

Hanna ZR, Henderson JB, Wall JD, Emerling CA, Fuchs J, Runckel C, Mindell DP, Bowie RCK, DeRisi JL, Dumbacher JP.

Genome Biol Evol. 2017 Oct 1;9(10):2522-2545. doi: 10.1093/gbe/evx158.

5.

Evaluating hybridization capture with RAD probes as a tool for museum genomics with historical bird specimens.

Linck EB, Hanna ZR, Sellas A, Dumbacher JP.

Ecol Evol. 2017 May 23;7(13):4755-4767. doi: 10.1002/ece3.3065. eCollection 2017 Jul.

6.

Reconstructing the molecular phylogeny of giant sengis (Macroscelidea; Macroscelididae; Rhynchocyon).

Carlen EJ, Rathbun GB, Olson LE, Sabuni CA, Stanley WT, Dumbacher JP.

Mol Phylogenet Evol. 2017 Aug;113:150-160. doi: 10.1016/j.ympev.2017.05.012. Epub 2017 May 24.

PMID:
28552433
7.

Novel Picornavirus Associated with Avian Keratin Disorder in Alaskan Birds.

Zylberberg M, Van Hemert C, Dumbacher JP, Handel CM, Tihan T, DeRisi JL.

MBio. 2016 Jul 26;7(4). pii: e00874-16. doi: 10.1128/mBio.00874-16.

8.
9.

Phylogeography of the Vermilion Flycatcher species complex: Multiple speciation events, shifts in migratory behavior, and an apparent extinction of a Galápagos-endemic bird species.

Carmi O, Witt CC, Jaramillo A, Dumbacher JP.

Mol Phylogenet Evol. 2016 Sep;102:152-73. doi: 10.1016/j.ympev.2016.05.029. Epub 2016 May 24.

PMID:
27233443
10.

Bird-Window Collisions at a West-Coast Urban Park Museum: Analyses of Bird Biology and Window Attributes from Golden Gate Park, San Francisco.

Kahle LQ, Flannery ME, Dumbacher JP.

PLoS One. 2016 Jan 5;11(1):e0144600. doi: 10.1371/journal.pone.0144600. eCollection 2016.

11.

Home range and use of diurnal shelters by the Etendeka round-eared sengi, a newly discovered Namibian endemic desert mammal.

Rathbun GB, Dumbacher JP.

PeerJ. 2015 Oct 1;3:e1302. doi: 10.7717/peerj.1302. eCollection 2015.

12.

Isolation of a Complete Circular Virus Genome Sequence from an Alaskan Black-Capped Chickadee (Poecile atricapillus) Gastrointestinal Tract Sample.

Hanna ZR, Runckel C, Fuchs J, DeRisi JL, Mindell DP, Van Hemert C, Handel CM, Dumbacher JP.

Genome Announc. 2015 Sep 24;3(5). pii: e01081-15. doi: 10.1128/genomeA.01081-15.

13.

Genetic differentiation within a widespread "supertramp" taxon: Molecular phylogenetics of the Louisiade White-eye (Zosterops griseotinctus).

Linck E, Schaack S, Dumbacher JP.

Mol Phylogenet Evol. 2016 Jan;94(Pt A):113-21. doi: 10.1016/j.ympev.2015.08.018. Epub 2015 Sep 3.

PMID:
26327326
14.

Specimen collection: an essential tool.

Rocha LA, Aleixo A, Allen G, Almeda F, Baldwin CC, Barclay MV, Bates JM, Bauer AM, Benzoni F, Berns CM, Berumen ML, Blackburn DC, Blum S, Bolaños F, Bowie RC, Britz R, Brown RM, Cadena CD, Carpenter K, Ceríaco LM, Chakrabarty P, Chaves G, Choat JH, Clements KD, Collette BB, Collins A, Coyne J, Cracraft J, Daniel T, de Carvalho MR, de Queiroz K, Di Dario F, Drewes R, Dumbacher JP, Engilis A Jr, Erdmann MV, Eschmeyer W, Feldman CR, Fisher BL, Fjeldså J, Fritsch PW, Fuchs J, Getahun A, Gill A, Gomon M, Gosliner T, Graves GR, Griswold CE, Guralnick R, Hartel K, Helgen KM, Ho H, Iskandar DT, Iwamoto T, Jaafar Z, James HF, Johnson D, Kavanaugh D, Knowlton N, Lacey E, Larson HK, Last P, Leis JM, Lessios H, Liebherr J, Lowman M, Mahler DL, Mamonekene V, Matsuura K, Mayer GC, Mays H Jr, McCosker J, McDiarmid RW, McGuire J, Miller MJ, Mooi R, Mooi RD, Moritz C, Myers P, Nachman MW, Nussbaum RA, Foighil DÓ, Parenti LR, Parham JF, Paul E, Paulay G, Pérez-Emán J, Pérez-Matus A, Poe S, Pogonoski J, Rabosky DL, Randall JE, Reimer JD, Robertson DR, Rödel MO, Rodrigues MT, Roopnarine P, Rüber L, Ryan MJ, Sheldon F, Shinohara G, Short A, Simison WB, Smith-Vaniz WF, Springer VG, Stiassny M, Tello JG, Thompson CW, Trnski T, Tucker P, Valqui T, Vecchione M, Verheyen E, Wainwright PC, Wheeler TA, White WT, Will K, Williams JT, Williams G, Wilson EO, Winker K, Winterbottom R, Witt CC.

Science. 2014 May 23;344(6186):814-5. doi: 10.1126/science.344.6186.814. No abstract available.

PMID:
24855245
15.
16.

Phylogeny and taxonomy of the round-eared sengis or elephant-shrews, genus Macroscelides (Mammalia, Afrotheria, Macroscelidea).

Dumbacher JP, Rathbun GB, Smit HA, Eiseb SJ.

PLoS One. 2012;7(3):e32410. doi: 10.1371/journal.pone.0032410. Epub 2012 Mar 27.

17.

A Passerine Bird's evolution corroborates the geologic history of the island of New Guinea.

Deiner K, Lemmon AR, Mack AL, Fleischer RC, Dumbacher JP.

PLoS One. 2011 May 6;6(5):e19479. doi: 10.1371/journal.pone.0019479.

18.

The flight of the Passenger Pigeon: phylogenetics and biogeographic history of an extinct species.

Johnson KP, Clayton DH, Dumbacher JP, Fleischer RC.

Mol Phylogenet Evol. 2010 Oct;57(1):455-8. doi: 10.1016/j.ympev.2010.05.010. Epub 2010 May 15.

PMID:
20478386
19.

Phylogeny of the avian genus Pitohui and the evolution of toxicity in birds.

Dumbacher JP, Deiner K, Thompson L, Fleischer RC.

Mol Phylogenet Evol. 2008 Dec;49(3):774-81. doi: 10.1016/j.ympev.2008.09.018. Epub 2008 Oct 1.

PMID:
18929671
20.

Blood parasites in owls with conservation implications for the Spotted Owl (Strix occidentalis).

Ishak HD, Dumbacher JP, Anderson NL, Keane JJ, Valkiūnas G, Haig SM, Tell LA, Sehgal RN.

PLoS One. 2008 May 28;3(5):e2304. doi: 10.1371/journal.pone.0002304.

21.

Mid-Pleistocene divergence of Cuban and North American ivory-billed woodpeckers.

Fleischer RC, Kirchman JJ, Dumbacher JP, Bevier L, Dove C, Rotzel NC, Edwards SV, Lammertink M, Miglia KJ, Moore WS.

Biol Lett. 2006 Sep 22;2(3):466-9.

22.

Tracing the phylogeography of human populations in Britain based on 4th-11th century mtDNA genotypes.

Töpf AL, Gilbert MT, Dumbacher JP, Hoelzel AR.

Mol Biol Evol. 2006 Jan;23(1):152-61. Epub 2005 Sep 8.

PMID:
16151183
23.

Prevalence and differential host-specificity of two avian blood parasite genera in the Australo-Papuan region.

Beadell JS, Gering E, Austin J, Dumbacher JP, Peirce MA, Pratt TK, Atkinson CT, Fleischer RC.

Mol Ecol. 2004 Dec;13(12):3829-44.

PMID:
15548295
24.

Melyrid beetles (Choresine): a putative source for the batrachotoxin alkaloids found in poison-dart frogs and toxic passerine birds.

Dumbacher JP, Wako A, Derrickson SR, Samuelson A, Spande TF, Daly JW.

Proc Natl Acad Sci U S A. 2004 Nov 9;101(45):15857-60. Epub 2004 Nov 1.

25.

Phylogeny of the owlet-nightjars (Aves: Aegothelidae) based on mitochondrial DNA sequence.

Dumbacher JP, Pratt TK, Fleischer RC.

Mol Phylogenet Evol. 2003 Dec;29(3):540-9.

PMID:
14615192
26.
27.

Batrachotoxin alkaloids from passerine birds: a second toxic bird genus (Ifrita kowaldi) from New Guinea.

Dumbacher JP, Spande TF, Daly JW.

Proc Natl Acad Sci U S A. 2000 Nov 21;97(24):12970-5.

28.

Homobatrachotoxin in the genus Pitohui: chemical defense in birds?

Dumbacher JP, Beehler BM, Spande TF, Garraffo HM, Daly JW.

Science. 1992 Oct 30;258(5083):799-801.

PMID:
1439786

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