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Items: 49

1.

Deep learning using tumor HLA peptide mass spectrometry datasets improves neoantigen identification.

Bulik-Sullivan B, Busby J, Palmer CD, Davis MJ, Murphy T, Clark A, Busby M, Duke F, Yang A, Young L, Ojo NC, Caldwell K, Abhyankar J, Boucher T, Hart MG, Makarov V, Montpreville VT, Mercier O, Chan TA, Scagliotti G, Bironzo P, Novello S, Karachaliou N, Rosell R, Anderson I, Gabrail N, Hrom J, Limvarapuss C, Choquette K, Spira A, Rousseau R, Voong C, Rizvi NA, Fadel E, Frattini M, Jooss K, Skoberne M, Francis J, Yelensky R.

Nat Biotechnol. 2018 Dec 17. doi: 10.1038/nbt.4313. [Epub ahead of print]

PMID:
30556813
2.

Persistence of endothelial thrombomodulin in a patient with infectious purpura fulminans treated with protein C concentrate.

Bendapudi PK, Robbins A, LeBoeuf N, Pozdnyakova O, Bhatt A, Duke F, Sells R, McQuiston J, Humrighouse B, Rouaisnel B, Colling M, Stephenson KE, Saavedra A, Losman JA.

Blood Adv. 2018 Nov 13;2(21):2917-2921. doi: 10.1182/bloodadvances.2018024430. No abstract available.

3.

Burly1 is a mouse QTL for lean body mass that maps to a 0.8-Mb region of chromosome 2.

Lin C, Fesi BD, Marquis M, Bosak NP, Lysenko A, Koshnevisan MA, Duke FF, Theodorides ML, Nelson TM, McDaniel AH, Avigdor M, Arayata CJ, Shaw L, Bachmanov AA, Reed DR.

Mamm Genome. 2018 Jun;29(5-6):325-343. doi: 10.1007/s00335-018-9746-7. Epub 2018 May 8.

PMID:
29737391
4.

Adiposity QTL Adip20 decomposes into at least four loci when dissected using congenic strains.

Lin C, Fesi BD, Marquis M, Bosak NP, Lysenko A, Koshnevisan MA, Duke FF, Theodorides ML, Nelson TM, McDaniel AH, Avigdor M, Arayata CJ, Shaw L, Bachmanov AA, Reed DR.

PLoS One. 2017 Dec 1;12(12):e0188972. doi: 10.1371/journal.pone.0188972. eCollection 2017.

5.

Genomic Activation of PPARG Reveals a Candidate Therapeutic Axis in Bladder Cancer.

Goldstein JT, Berger AC, Shih J, Duke FF, Furst L, Kwiatkowski DJ, Cherniack AD, Meyerson M, Strathdee CA.

Cancer Res. 2017 Dec 15;77(24):6987-6998. doi: 10.1158/0008-5472.CAN-17-1701. Epub 2017 Sep 18.

6.

Genetic analysis of impaired trimethylamine metabolism using whole exome sequencing.

Guo Y, Hwang LD, Li J, Eades J, Yu CW, Mansfield C, Burdick-Will A, Chang X, Chen Y, Duke FF, Zhang J, Fakharzadeh S, Fennessey P, Keating BJ, Jiang H, Hakonarson H, Reed DR, Preti G.

BMC Med Genet. 2017 Feb 15;18(1):11. doi: 10.1186/s12881-017-0369-8.

7.

Metagenomic Characterization of Microbial Communities In Situ Within the Deeper Layers of the Ileum in Crohn's Disease.

Pedamallu CS, Bhatt AS, Bullman S, Fowler S, Freeman SS, Durand J, Jung J, Duke F, Manzo V, Cai D, Ananthakrishnan A, Ojesina AI, Ramachandran A, Gevers D, Xavier RJ, Bhan AK, Meyerson M, Yajnik V.

Cell Mol Gastroenterol Hepatol. 2016 May 26;2(5):563-566.e5. doi: 10.1016/j.jcmgh.2016.05.011. eCollection 2016 Sep.

8.

Response to Protocol Review Scenario: The answers are in experimental design.

Duke F, Jen K.

Lab Anim (NY). 2016 Jan;45(1):14. doi: 10.1038/laban.905. No abstract available.

PMID:
26684951
9.

Body Composition QTLs Identified in Intercross Populations Are Reproducible in Consomic Mouse Strains.

Lin C, Fesi BD, Marquis M, Bosak NP, Theodorides ML, Avigdor M, McDaniel AH, Duke FF, Lysenko A, Khoshnevisan A, Gantick BR, Arayata CJ, Nelson TM, Bachmanov AA, Reed DR.

PLoS One. 2015 Nov 9;10(11):e0141494. doi: 10.1371/journal.pone.0141494. eCollection 2015.

10.

Cyclic Fatigue of ProFile Vortex and Vortex Blue Nickel-Titanium Files in Single and Double Curvatures.

Duke F, Shen Y, Zhou H, Ruse ND, Wang ZJ, Hieawy A, Haapasalo M.

J Endod. 2015 Oct;41(10):1686-90. doi: 10.1016/j.joen.2015.06.012. Epub 2015 Jul 31.

PMID:
26234542
11.

DNA copy number analysis of metastatic urothelial carcinoma with comparison to primary tumors.

Bambury RM, Bhatt AS, Riester M, Pedamallu CS, Duke F, Bellmunt J, Stack EC, Werner L, Park R, Iyer G, Loda M, Kantoff PW, Michor F, Meyerson M, Rosenberg JE.

BMC Cancer. 2015 Apr 9;15:242. doi: 10.1186/s12885-015-1192-2.

12.

The tumor virus landscape of AIDS-related lymphomas.

Arvey A, Ojesina AI, Pedamallu CS, Ballon G, Jung J, Duke F, Leoncini L, De Falco G, Bressman E, Tam W, Chadburn A, Meyerson M, Cesarman E.

Blood. 2015 May 14;125(20):e14-22. doi: 10.1182/blood-2014-11-599951. Epub 2015 Mar 31.

13.

Ocular Trauma Originating from within the Oral Cavity: Clinical Relevance and Histologic Findings in 10 Cases (2003-2013).

Duke FD, Snyder CJ, Bentley E, Dubielzig RR.

J Vet Dent. 2014 Dec;31(4):245-248. doi: 10.1177/089875641403100404.

PMID:
30870962
14.

Malawi polyomavirus is a prevalent human virus that interacts with known tumor suppressors.

Berrios C, Jung J, Primi B, Wang M, Pedamallu C, Duke F, Marcelus C, Cheng J, Garcea RL, Meyerson M, DeCaprio JA.

J Virol. 2015 Jan;89(1):857-62. doi: 10.1128/JVI.02328-14. Epub 2014 Oct 15.

15.

Quantifying optic nerve axons in a cat glaucoma model by a semi-automated targeted counting method.

Teixeira LB, Buhr KA, Bowie O, Duke FD, Nork TM, Dubielzig RR, McLellan GJ.

Mol Vis. 2014 Mar 28;20:376-85. eCollection 2014.

16.

In search of a candidate pathogen for giant cell arteritis: sequencing-based characterization of the giant cell arteritis microbiome.

Bhatt AS, Manzo VE, Pedamallu CS, Duke F, Cai D, Bienfang DC, Padera RF, Meyerson M, Docken WP.

Arthritis Rheumatol. 2014 Jul;66(7):1939-44. doi: 10.1002/art.38631.

17.

Malignant uveal schwannoma with peripheral nerve extension in a 12-week-old color-dilute Labrador Retriever.

Duke FD, Teixeira LB, Galle LE, Green N, Dubielzig RR.

Vet Pathol. 2015 Jan;52(1):181-5. doi: 10.1177/0300985814522811. Epub 2014 Feb 10.

PMID:
24513800
18.

Oncogenic RIT1 mutations in lung adenocarcinoma.

Berger AH, Imielinski M, Duke F, Wala J, Kaplan N, Shi GX, Andres DA, Meyerson M.

Oncogene. 2014 Aug 28;33(35):4418-23. doi: 10.1038/onc.2013.581. Epub 2014 Jan 27.

19.

Landscape of genomic alterations in cervical carcinomas.

Ojesina AI, Lichtenstein L, Freeman SS, Pedamallu CS, Imaz-Rosshandler I, Pugh TJ, Cherniack AD, Ambrogio L, Cibulskis K, Bertelsen B, Romero-Cordoba S, Treviño V, Vazquez-Santillan K, Guadarrama AS, Wright AA, Rosenberg MW, Duke F, Kaplan B, Wang R, Nickerson E, Walline HM, Lawrence MS, Stewart C, Carter SL, McKenna A, Rodriguez-Sanchez IP, Espinosa-Castilla M, Woie K, Bjorge L, Wik E, Halle MK, Hoivik EA, Krakstad C, Gabiño NB, Gómez-Macías GS, Valdez-Chapa LD, Garza-Rodríguez ML, Maytorena G, Vazquez J, Rodea C, Cravioto A, Cortes ML, Greulich H, Crum CP, Neuberg DS, Hidalgo-Miranda A, Escareno CR, Akslen LA, Carey TE, Vintermyr OK, Gabriel SB, Barrera-Saldaña HA, Melendez-Zajgla J, Getz G, Salvesen HB, Meyerson M.

Nature. 2014 Feb 20;506(7488):371-5. doi: 10.1038/nature12881. Epub 2013 Dec 25.

20.

Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome.

Bhatt AS, Freeman SS, Herrera AF, Pedamallu CS, Gevers D, Duke F, Jung J, Michaud M, Walker BJ, Young S, Earl AM, Kostic AD, Ojesina AI, Hasserjian R, Ballen KK, Chen YB, Hobbs G, Antin JH, Soiffer RJ, Baden LR, Garrett WS, Hornick JL, Marty FM, Meyerson M.

N Engl J Med. 2013 Aug 8;369(6):517-28. doi: 10.1056/NEJMoa1211115.

21.

Feline ocular tumors following ciliary body ablation with intravitreal gentamicin.

Duke FD, Strong TD, Bentley E, Dubielzig RR.

Vet Ophthalmol. 2013 Jul;16 Suppl 1:188-90. doi: 10.1111/vop.12066. Epub 2013 May 22.

PMID:
23701585
22.

Metastatic uveal schwannoma of blue-eyed dogs.

Duke FD, Brudenall DK, Scott EM, Teixeira LB, Dubielzig RR.

Vet Ophthalmol. 2013 Jul;16 Suppl 1:141-4. doi: 10.1111/vop.12022. Epub 2013 Jan 2.

PMID:
23281783
23.

Genetic analysis of chemosensory traits in human twins.

Knaapila A, Hwang LD, Lysenko A, Duke FF, Fesi B, Khoshnevisan A, James RS, Wysocki CJ, Rhyu M, Tordoff MG, Bachmanov AA, Mura E, Nagai H, Reed DR.

Chem Senses. 2012 Nov;37(9):869-81. doi: 10.1093/chemse/bjs070. Epub 2012 Sep 13.

24.

Canine ocular tumors following ciliary body ablation with intravitreal gentamicin.

Duke FD, Strong TD, Bentley E, Dubielzig RR.

Vet Ophthalmol. 2013 Mar;16(2):159-62. doi: 10.1111/j.1463-5224.2012.01050.x. Epub 2012 Jul 19.

PMID:
22812389
25.

Sequence analysis of mutations and translocations across breast cancer subtypes.

Banerji S, Cibulskis K, Rangel-Escareno C, Brown KK, Carter SL, Frederick AM, Lawrence MS, Sivachenko AY, Sougnez C, Zou L, Cortes ML, Fernandez-Lopez JC, Peng S, Ardlie KG, Auclair D, Bautista-Piña V, Duke F, Francis J, Jung J, Maffuz-Aziz A, Onofrio RC, Parkin M, Pho NH, Quintanar-Jurado V, Ramos AH, Rebollar-Vega R, Rodriguez-Cuevas S, Romero-Cordoba SL, Schumacher SE, Stransky N, Thompson KM, Uribe-Figueroa L, Baselga J, Beroukhim R, Polyak K, Sgroi DC, Richardson AL, Jimenez-Sanchez G, Lander ES, Gabriel SB, Garraway LA, Golub TR, Melendez-Zajgla J, Toker A, Getz G, Hidalgo-Miranda A, Meyerson M.

Nature. 2012 Jun 20;486(7403):405-9. doi: 10.1038/nature11154.

26.

Genomic analysis identifies association of Fusobacterium with colorectal carcinoma.

Kostic AD, Gevers D, Pedamallu CS, Michaud M, Duke F, Earl AM, Ojesina AI, Jung J, Bass AJ, Tabernero J, Baselga J, Liu C, Shivdasani RA, Ogino S, Birren BW, Huttenhower C, Garrett WS, Meyerson M.

Genome Res. 2012 Feb;22(2):292-8. doi: 10.1101/gr.126573.111. Epub 2011 Oct 18.

27.

Body fat distribution and organ weights of 14 common strains and a 22-strain consomic panel of rats.

Reed DR, Duke FF, Ellis HK, Rosazza MR, Lawler MP, Alarcon LK, Tordoff MG.

Physiol Behav. 2011 Jul 6;103(5):523-9. doi: 10.1016/j.physbeh.2011.04.006. Epub 2011 Apr 15.

28.

Psychophysical dissection of genotype effects on human bitter perception.

Mennella JA, Pepino MY, Duke FF, Reed DR.

Chem Senses. 2011 Jan;36(2):161-7. doi: 10.1093/chemse/bjq106. Epub 2010 Oct 27.

29.

Excretion and perception of a characteristic odor in urine after asparagus ingestion: a psychophysical and genetic study.

Pelchat ML, Bykowski C, Duke FF, Reed DR.

Chem Senses. 2011 Jan;36(1):9-17. doi: 10.1093/chemse/bjq081. Epub 2010 Sep 27.

30.

The perception of quinine taste intensity is associated with common genetic variants in a bitter receptor cluster on chromosome 12.

Reed DR, Zhu G, Breslin PA, Duke FF, Henders AK, Campbell MJ, Montgomery GW, Medland SE, Martin NG, Wright MJ.

Hum Mol Genet. 2010 Nov 1;19(21):4278-85. doi: 10.1093/hmg/ddq324. Epub 2010 Jul 30.

31.

Age modifies the genotype-phenotype relationship for the bitter receptor TAS2R38.

Mennella JA, Pepino MY, Duke FF, Reed DR.

BMC Genet. 2010 Jul 1;11:60. doi: 10.1186/1471-2156-11-60.

32.

Stimulation of medial prefrontal cortex serotonin 2C (5-HT(2C)) receptors attenuates cocaine-seeking behavior.

Pentkowski NS, Duke FD, Weber SM, Pockros LA, Teer AP, Hamilton EC, Thiel KJ, Neisewander JL.

Neuropsychopharmacology. 2010 Sep;35(10):2037-48. doi: 10.1038/npp.2010.72. Epub 2010 Jun 2.

33.

Radiation exposure of aircrews.

Friedberg W, Copeland K, Duke FE, Nicholas JS, Darden EB Jr, O'Brien K 3rd.

Occup Med. 2002 Apr-Jun;17(2):293-309, v.

PMID:
11872442
34.

Risedronate pharmacokinetics and intra- and inter-subject variability upon single-dose intravenous and oral administration.

Mitchell DY, Barr WH, Eusebio RA, Stevens KA, Duke FP, Russell DA, Nesbitt JD, Powell JH, Thompson GA.

Pharm Res. 2001 Feb;18(2):166-70.

PMID:
11405286
35.

Radiation exposure during air travel: guidance provided by the Federal Aviation Administration for air carrier crews.

Friedberg W, Copeland K, Duke FE, O'Brien K 3rd, Darden EB Jr.

Health Phys. 2000 Nov;79(5):591-5.

PMID:
11045535
36.

Galactic cosmic radiation exposure of pregnant flight crewmembers.

Nicholas JS, Copeland KA, Duke FE, Friedberg W, O'Brien K 3rd.

Aviat Space Environ Med. 2000 Jun;71(6):647-8.

PMID:
10870825
37.

Mobilizing the community to utilize obstetric services, Cross River State, Nigeria. The Calabar PMM Team.

Olaniran N, Offiong S, Ottong J, Asuquo E, Duke F.

Int J Gynaecol Obstet. 1997 Nov;59 Suppl 2:S181-9.

PMID:
9389630
38.

Community mobilization for blood donation, Cross River State, Nigeria. The Calabar PMM Team.

Ottong JG, Asuquo EE, Olaniran NS, Duke FD, Abia RP.

Int J Gynaecol Obstet. 1997 Nov;59 Suppl 2:S119-25.

PMID:
9389622
39.

Collaboration with government leaders to promote sustainability, Cross River State, Nigeria. The Calabar PMM Team.

Duke F, Asuquo E, Ottong J, Olaniran N, Ekanem E.

Int J Gynaecol Obstet. 1997 Nov;59 Suppl 2:S113-7.

PMID:
9389621
40.

Evidence for a schizophrenia vulnerability locus on chromosome 8p in the Irish Study of High-Density Schizophrenia Families.

Kendler KS, MacLean CJ, O'Neill FA, Burke J, Murphy B, Duke F, Shinkwin R, Easter SM, Webb BT, Zhang J, Walsh D, Straub RE.

Am J Psychiatry. 1996 Dec;153(12):1534-40.

PMID:
8942448
41.

Irish study on high-density schizophrenia families: field methods and power to detect linkage.

Kendler KS, O'Neill FA, Burke J, Murphy B, Duke F, Straub RE, Shinkwin R, Ni Nuallain M, MacLean CJ, Walsh D.

Am J Med Genet. 1996 Apr 9;67(2):179-90.

PMID:
8723045
42.

A potential vulnerability locus for schizophrenia on chromosome 6p24-22: evidence for genetic heterogeneity.

Straub RE, MacLean CJ, O'Neill FA, Burke J, Murphy B, Duke F, Shinkwin R, Webb BT, Zhang J, Walsh D, et al.

Nat Genet. 1995 Nov;11(3):287-93.

PMID:
7581452
43.

Mannerly research.

McClelland RJ, O'Neill FA, Duke FJ.

Nature. 1995 Jun 22;375(6533):625. No abstract available.

PMID:
7791887
44.

Substrate inhibition with glucose oxidase.

Nicol MJ, Duke FR.

J Biol Chem. 1966 Sep 25;241(18):4292-3. No abstract available.

45.

Flavin enzymes: molecular orbital calculations.

Carper WR, Freeland MQ, Duke FR.

Talanta. 1966 Jul;13(7):1033-42.

PMID:
18959969
46.
47.

Reactions involving like-charged ions; a neutral intermediate in alkaline permanganate oxidations.

DUKE FR.

J Am Chem Soc. 1948 Dec;70(12):3975-8. No abstract available.

PMID:
18105915
48.

The theory and kinetics of specific oxidation; the trivalent manganese-oxalate reaction.

DUKE FR.

J Am Chem Soc. 1947 Nov;69(11):2885-8. No abstract available.

PMID:
20270845
49.

The Different Types of Corynebacterium diphtheriae.

Menton J, Cooper TV, Duke FW, Fussell WH.

J Hyg (Lond). 1933 Aug;33(3):414-20. No abstract available.

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