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Fecal carriage of Extended Spectrum ß-Lactamase (ESBL)/AmpC-producing Escherichia coli in horses.

Hordijk J, Farmakioti E, Smit LAM, Duim B, Graveland H, Theelen MJP, Wagenaar JA.

Appl Environ Microbiol. 2020 Feb 7. pii: AEM.02590-19. doi: 10.1128/AEM.02590-19. [Epub ahead of print]


Specific staphylococcal cassette chromosome mec (SCCmec) types and clonal complexes are associated with low-level amoxicillin/clavulanic acid and cefalotin resistance in methicillin-resistant Staphylococcus pseudintermedius.

Wegener A, Damborg P, Guardabassi L, Moodley A, Mughini-Gras L, Duim B, Wagenaar JA, Broens EM.

J Antimicrob Chemother. 2020 Mar 1;75(3):508-511. doi: 10.1093/jac/dkz509.


Living in Cold Blood: Arcobacter, Campylobacter, and Helicobacter in Reptiles.

Gilbert MJ, Duim B, Zomer AL, Wagenaar JA.

Front Microbiol. 2019 May 15;10:1086. doi: 10.3389/fmicb.2019.01086. eCollection 2019. Review.


Zoonotic Endocarditis in a Man, the Netherlands.

Sleutjens J, Meijer D, Meregalli PG, Bakker L, Wagenaar JA, Duim B, Zomer A.

Emerg Infect Dis. 2019 Jan;25(1):180-182. doi: 10.3201/eid2501.181029.


Comparative genomics of phenotypic antimicrobial resistances in methicillin-resistant Staphylococcus pseudintermedius of canine origin.

Wegener A, Broens EM, Zomer A, Spaninks M, Wagenaar JA, Duim B.

Vet Microbiol. 2018 Nov;225:125-131. doi: 10.1016/j.vetmic.2018.09.013. Epub 2018 Sep 22.


High Production of LukMF' in Staphylococcus aureus Field Strains Is Associated with Clinical Bovine Mastitis.

Hoekstra J, Rutten V, Sommeling L, van Werven T, Spaninks M, Duim B, Benedictus L, Koop G.

Toxins (Basel). 2018 May 15;10(5). pii: E200. doi: 10.3390/toxins10050200.


Campylobacter blaseri sp. nov., isolated from common seals (Phoca vitulina).

Gilbert MJ, Zomer AL, Timmerman AJ, Spaninks MP, Rubio-García A, Rossen JW, Duim B, Wagenaar JA.

Int J Syst Evol Microbiol. 2018 May;68(5):1787-1794. doi: 10.1099/ijsem.0.002742. Epub 2018 Apr 6.


Homologous Recombination between Genetically Divergent Campylobacter fetus Lineages Supports Host-Associated Speciation.

Gilbert MJ, Duim B, van der Graaf-van Bloois L, Wagenaar JA, Zomer AL.

Genome Biol Evol. 2018 Mar 1;10(3):716-722. doi: 10.1093/gbe/evy048.


Methicillin-resistant Staphylococcus pseudintermedius among dogs in the description of novel SCCmec variants.

Duim B, Verstappen KMHW, Kalupahana RS, Ranathunga L, Fluit AC, Wagenaar JA.

Vet Microbiol. 2018 Jan;213:136-141. doi: 10.1016/j.vetmic.2017.11.022. Epub 2017 Nov 21.


Correction: Development of a real-time PCR for detection of Staphylococcus pseudintermedius using a novel automated comparison of whole-genome sequences.

Verstappen KM, Huijbregts L, Spaninks M, Wagenaar JA, Fluit AC, Duim B.

PLoS One. 2017 Dec 6;12(12):e0189520. doi: 10.1371/journal.pone.0189520. eCollection 2017.


Raw pet food as a risk factor for shedding of extended-spectrum beta-lactamase-producing Enterobacteriaceae in household cats.

Baede VO, Broens EM, Spaninks MP, Timmerman AJ, Graveland H, Wagenaar JA, Duim B, Hordijk J.

PLoS One. 2017 Nov 2;12(11):e0187239. doi: 10.1371/journal.pone.0187239. eCollection 2017.


[Outbreak of Campylobacter fetus infection after consumption of unpasteurized sheep's milk cheeses: how to trace the source?]

Koppenaal H, Groenendijk F, van den Berge M, Verkade E, Verduin K, Zomer AL, Duim B, Wagenaar JA, Tijsma ASL, Spierenburg MAH, te Wierik MJM.

Ned Tijdschr Geneeskd. 2017;161:D1704. Review. Dutch.


Development of a real-time PCR for detection of Staphylococcus pseudintermedius using a novel automated comparison of whole-genome sequences.

Verstappen KM, Huijbregts L, Spaninks M, Wagenaar JA, Fluit AC, Duim B.

PLoS One. 2017 Aug 31;12(8):e0183925. doi: 10.1371/journal.pone.0183925. eCollection 2017. Erratum in: PLoS One. 2017 Dec 6;12 (12 ):e0189520.


Whole genome-based phylogeny of reptile-associated Helicobacter indicates independent niche adaptation followed by diversification in a poikilothermic host.

Gilbert MJ, Duim B, Timmerman AJ, Zomer AL, Wagenaar JA.

Sci Rep. 2017 Aug 21;7(1):8387. doi: 10.1038/s41598-017-09091-7.


Staphylococcus aureus Nasal Colonization Differs among Pig Lineages and Is Associated with the Presence of Other Staphylococcal Species.

Verstappen KM, Willems E, Fluit AC, Duim B, Martens M, Wagenaar JA.

Front Vet Sci. 2017 Jun 23;4:97. doi: 10.3389/fvets.2017.00097. eCollection 2017.


Campylobacter pinnipediorum sp. nov., isolated from pinnipeds, comprising Campylobacter pinnipediorum subsp. pinnipediorum subsp. nov. and Campylobacter pinnipediorum subsp. caledonicus subsp. nov.

Gilbert MJ, Miller WG, Leger JS, Chapman MH, Timmerman AJ, Duim B, Foster G, Wagenaar JA.

Int J Syst Evol Microbiol. 2017 Jun;67(6):1961-1968. doi: 10.1099/ijsem.0.001894. Epub 2017 Jun 20.


Sustained fecal-oral human-to-human transmission following a zoonotic event.

de Graaf M, Beck R, Caccio SM, Duim B, Fraaij P, Le Guyader FS, Lecuit M, Le Pendu J, de Wit E, Schultsz C.

Curr Opin Virol. 2017 Feb;22:1-6. doi: 10.1016/j.coviro.2016.11.001. Epub 2016 Nov 23. Review.


Comparative Genomics of Campylobacter iguaniorum to Unravel Genetic Regions Associated with Reptilian Hosts.

Gilbert MJ, Miller WG, Yee E, Kik M, Zomer AL, Wagenaar JA, Duim B.

Genome Biol Evol. 2016 Oct 5;8(9):3022-3029.


Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production.

van der Graaf-van Bloois L, Duim B, Miller WG, Forbes KJ, Wagenaar JA, Zomer A.

BMC Genomics. 2016 Sep 6;17:713. doi: 10.1186/s12864-016-3058-7.


The Effectiveness of Bacteriophages against Methicillin-Resistant Staphylococcus aureus ST398 Nasal Colonization in Pigs.

Verstappen KM, Tulinski P, Duim B, Fluit AC, Carney J, van Nes A, Wagenaar JA.

PLoS One. 2016 Aug 3;11(8):e0160242. doi: 10.1371/journal.pone.0160242. eCollection 2016.


Simultaneous Quantification and Differentiation of Streptococcus suis Serotypes 2 and 9 by Quantitative Real-Time PCR, Evaluated in Tonsillar and Nasal Samples of Pigs.

Dekker N, Daemen I, Verstappen K, de Greeff A, Smith H, Duim B.

Pathogens. 2016 Jun 30;5(3). pii: E46. doi: 10.3390/pathogens5030046.


Comparative Genomics of Campylobacter fetus from Reptiles and Mammals Reveals Divergent Evolution in Host-Associated Lineages.

Gilbert MJ, Miller WG, Yee E, Zomer AL, van der Graaf-van Bloois L, Fitzgerald C, Forbes KJ, Méric G, Sheppard SK, Wagenaar JA, Duim B.

Genome Biol Evol. 2016 Jul 2;8(6):2006-19. doi: 10.1093/gbe/evw146.


Quantifying potential sources of surface water contamination with Campylobacter jejuni and Campylobacter coli.

Mughini-Gras L, Penny C, Ragimbeau C, Schets FM, Blaak H, Duim B, Wagenaar JA, de Boer A, Cauchie HM, Mossong J, van Pelt W.

Water Res. 2016 Sep 15;101:36-45. doi: 10.1016/j.watres.2016.05.069. Epub 2016 May 24.


Campylobacter fetus Subspecies Contain Conserved Type IV Secretion Systems on Multiple Genomic Islands and Plasmids.

Graaf-van Bloois Lv, Miller WG, Yee E, Gorkiewicz G, Forbes KJ, Zomer AL, Wagenaar JA, Duim B.

PLoS One. 2016 Apr 6;11(4):e0152832. doi: 10.1371/journal.pone.0152832. eCollection 2016.


Changes in the Population of Methicillin-Resistant Staphylococcus pseudintermedius and Dissemination of Antimicrobial-Resistant Phenotypes in the Netherlands.

Duim B, Verstappen KM, Broens EM, Laarhoven LM, van Duijkeren E, Hordijk J, de Heus P, Spaninks M, Timmerman AJ, Wagenaar JA.

J Clin Microbiol. 2016 Feb;54(2):283-8. doi: 10.1128/JCM.01288-15. Epub 2015 Nov 18.


Longitudinal study of extended-spectrum-β-lactamase- and AmpC-producing Enterobacteriaceae in household dogs.

Baede VO, Wagenaar JA, Broens EM, Duim B, Dohmen W, Nijsse R, Timmerman AJ, Hordijk J.

Antimicrob Agents Chemother. 2015;59(6):3117-24. doi: 10.1128/AAC.04576-14. Epub 2015 Mar 16.


Campylobacter iguaniorum sp. nov., isolated from reptiles.

Gilbert MJ, Kik M, Miller WG, Duim B, Wagenaar JA.

Int J Syst Evol Microbiol. 2015 Mar;65(Pt 3):975-82. doi: 10.1099/ijs.0.000048. Epub 2015 Jan 8.


Transmission through air as a possible route of exposure for MRSA.

Bos ME, Verstappen KM, van Cleef BA, Dohmen W, Dorado-García A, Graveland H, Duim B, Wagenaar JA, Kluytmans JA, Heederik DJ.

J Expo Sci Environ Epidemiol. 2016 May-Jun;26(3):263-9. doi: 10.1038/jes.2014.85. Epub 2014 Dec 17.


Experimental nasal colonization of piglets with methicillin-susceptible and methicillin-resistant Staphylococcus aureus.

Verstappen KM, Duim B, van Nes A, Snijders S, van Wamel WJB, Wagenaar JA.

Vet Microbiol. 2014 Dec 5;174(3-4):483-488. doi: 10.1016/j.vetmic.2014.09.019. Epub 2014 Oct 5.


Staphylococcus aureus ST398 gene expression profiling during ex vivo colonization of porcine nasal epithelium.

Tulinski P, Duim B, Wittink FR, Jonker MJ, Breit TM, van Putten JP, Wagenaar JA, Fluit AC.

BMC Genomics. 2014 Oct 20;15:915. doi: 10.1186/1471-2164-15-915.


Inconsistency of phenotypic and genomic characteristics of Campylobacter fetus subspecies requires reevaluation of current diagnostics.

van der Graaf-van Bloois L, Miller WG, Yee E, Rijnsburger M, Wagenaar JA, Duim B.

J Clin Microbiol. 2014 Dec;52(12):4183-8. doi: 10.1128/JCM.01837-14. Epub 2014 Sep 17.


Complete Genome Sequence of Campylobacter iguaniorum Strain 1485ET, Isolated from a Bearded Dragon (Pogona vitticeps).

Gilbert MJ, Miller WG, Yee E, Kik M, Wagenaar JA, Duim B.

Genome Announc. 2014 Aug 21;2(4). pii: e00844-14. doi: 10.1128/genomeA.00844-14.


Occurrence, diversity, and host association of intestinal Campylobacter, Arcobacter, and Helicobacter in reptiles.

Gilbert MJ, Kik M, Timmerman AJ, Severs TT, Kusters JG, Duim B, Wagenaar JA.

PLoS One. 2014 Jul 2;9(7):e101599. doi: 10.1371/journal.pone.0101599. eCollection 2014.


Campylobacter fetus subsp. testudinum subsp. nov., isolated from humans and reptiles.

Fitzgerald C, Tu ZC, Patrick M, Stiles T, Lawson AJ, Santovenia M, Gilbert MJ, van Bergen M, Joyce K, Pruckler J, Stroika S, Duim B, Miller WG, Loparev V, Sinnige JC, Fields PI, Tauxe RV, Blaser MJ, Wagenaar JA.

Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):2944-8. doi: 10.1099/ijs.0.057778-0. Epub 2014 Jun 4.


First Closed Genome Sequence of Campylobacter fetus subsp. venerealis bv. intermedius.

van der Graaf-van Bloois L, Miller WG, Yee E, Bono JL, Rijnsburger M, Campero C, Wagenaar JA, Duim B.

Genome Announc. 2014 Feb 6;2(1). pii: e01246-13. doi: 10.1128/genomeA.01246-13.


Dynamics of methicillin-resistant Staphylococcus aureus and methicillin-susceptible Staphylococcus aureus carriage in pig farmers: a prospective cohort study.

van Cleef BA, van Benthem BH, Verkade EJ, van Rijen M, Kluytmans-van den Bergh MF, Schouls LM, Duim B, Wagenaar JA, Graveland H, Bos ME, Heederik D, Kluytmans JA.

Clin Microbiol Infect. 2014 Oct;20(10):O764-71. doi: 10.1111/1469-0691.12582. Epub 2014 May 15.


Complete Genome Sequence of Campylobacter fetus subsp. testudinum Strain 03-427T.

Gilbert MJ, Miller WG, Yee E, Blaser MJ, Wagenaar JA, Duim B.

Genome Announc. 2013 Dec 12;1(6). pii: e01002-13. doi: 10.1128/genomeA.01002-13.


High prevalence of fecal carriage of extended spectrum β-lactamase/AmpC-producing Enterobacteriaceae in cats and dogs.

Hordijk J, Schoormans A, Kwakernaak M, Duim B, Broens E, Dierikx C, Mevius D, Wagenaar JA.

Front Microbiol. 2013 Aug 16;4:242. doi: 10.3389/fmicb.2013.00242. eCollection 2013.


Propidium monoazide does not fully inhibit the detection of dead Campylobacter on broiler chicken carcasses by qPCR.

Pacholewicz E, Swart A, Lipman LJ, Wagenaar JA, Havelaar AH, Duim B.

J Microbiol Methods. 2013 Oct;95(1):32-8. doi: 10.1016/j.mimet.2013.06.003. Epub 2013 Jun 25.


Evaluation of molecular assays for identification Campylobacter fetus species and subspecies and development of a C. fetus specific real-time PCR assay.

van der Graaf-van Bloois L, van Bergen MA, van der Wal FJ, de Boer AG, Duim B, Schmidt T, Wagenaar JA.

J Microbiol Methods. 2013 Oct;95(1):93-7. doi: 10.1016/j.mimet.2013.06.005. Epub 2013 Jun 26.


An ex vivo porcine nasal mucosa explants model to study MRSA colonization.

Tulinski P, Fluit AC, van Putten JP, de Bruin A, Glorieux S, Wagenaar JA, Duim B.

PLoS One. 2013;8(1):e53783. doi: 10.1371/journal.pone.0053783. Epub 2013 Jan 11.


Multilocus sequence typing for characterization of Staphylococcus pseudintermedius.

Solyman SM, Black CC, Duim B, Perreten V, van Duijkeren E, Wagenaar JA, Eberlein LC, Sadeghi LN, Videla R, Bemis DA, Kania SA.

J Clin Microbiol. 2013 Jan;51(1):306-10. doi: 10.1128/JCM.02421-12. Epub 2012 Oct 31.


Real-time PCR to distinguish livestock-associated (ST398) from non-livestock-associated (methicillin-resistant) Staphylococcus aureus.

van Meurs ML, Schellekens JJ, de Neeling AJ, Duim B, Schneeberger PM, Hermans MH.

Infection. 2013 Apr;41(2):339-46. doi: 10.1007/s15010-012-0319-5. Epub 2012 Sep 1.


Differences in the population structure of invasive Streptococcus suis strains isolated from pigs and from humans in The Netherlands.

Schultsz C, Jansen E, Keijzers W, Rothkamp A, Duim B, Wagenaar JA, van der Ende A.

PLoS One. 2012;7(5):e33854. doi: 10.1371/journal.pone.0033854. Epub 2012 May 1.


Livestock-associated MRSA ST398 carriage in pig slaughterhouse workers related to quantitative environmental exposure.

Gilbert MJ, Bos ME, Duim B, Urlings BA, Heres L, Wagenaar JA, Heederik DJ.

Occup Environ Med. 2012 Jul;69(7):472-8. doi: 10.1136/oemed-2011-100069. Epub 2012 Apr 27.


[Methicillin resistant Staphylococcus pseudointermedius: recent insights for small animal practices].

de Heus P, Laarhoven LM, Duim B, Bos ME, Broens EM, Wagenaar JA.

Tijdschr Diergeneeskd. 2012 Mar 1;137(3):178-81. Dutch. No abstract available.


Detection of Actinobacillus pleuropneumoniae in pigs by real-time quantitative PCR for the apxIVA gene.

Tobias TJ, Bouma A, Klinkenberg D, Daemen AJ, Stegeman JA, Wagenaar JA, Duim B.

Vet J. 2012 Aug;193(2):557-60. doi: 10.1016/j.tvjl.2012.02.004. Epub 2012 Mar 23.


In vitro antimicrobial activity of miconazole and polymyxin B against canine meticillin-resistant Staphylococcus aureus and meticillin-resistant Staphylococcus pseudintermedius isolates.

Boyen F, Verstappen KM, De Bock M, Duim B, Weese JS, Schwarz S, Haesebrouck F, Wagenaar JA.

Vet Dermatol. 2012 Aug;23(4):381-5, e70. doi: 10.1111/j.1365-3164.2012.01040.x. Epub 2012 Mar 12.


Longitudinal study on methicillin-resistant Staphylococcus pseudintermedius in households.

Laarhoven LM, de Heus P, van Luijn J, Duim B, Wagenaar JA, van Duijkeren E.

PLoS One. 2011;6(11):e27788. doi: 10.1371/journal.pone.0027788. Epub 2011 Nov 23.


Methicillin-resistant coagulase-negative staphylococci on pig farms as a reservoir of heterogeneous staphylococcal cassette chromosome mec elements.

Tulinski P, Fluit AC, Wagenaar JA, Mevius D, van de Vijver L, Duim B.

Appl Environ Microbiol. 2012 Jan;78(2):299-304. doi: 10.1128/AEM.05594-11. Epub 2011 Nov 11.

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