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Items: 1 to 50 of 62

1.

The critical period for darkness-induced recovery of the vision of the amblyopic eye following early monocular deprivation.

Mitchell DE, Crowder NA, Duffy KR.

J Vis. 2019 Jun 3;19(6):25. doi: 10.1167/19.6.25.

PMID:
31251809
2.

Fast Recovery of the Amblyopic Eye Acuity of Kittens following Brief Exposure to Total Darkness Depends on the Fellow Eye.

Mitchell DE, Aronitz E, Bobbie-Ansah P, Crowder N, Duffy KR.

Neural Plast. 2019 Apr 24;2019:7624837. doi: 10.1155/2019/7624837. eCollection 2019.

3.

Sample path properties of the average generation of a Bellman-Harris process.

Meli G, Weber TS, Duffy KR.

J Math Biol. 2019 Jul;79(2):673-704. doi: 10.1007/s00285-019-01373-0. Epub 2019 May 8.

PMID:
31069504
4.

The concept of margins of stability can be used to better understand a change in obstacle crossing strategy with an increase in age.

Hak L, Hettinga FJ, Duffy KR, Jackson J, Sandercock GRH, Taylor MJD.

J Biomech. 2019 Feb 14;84:147-152. doi: 10.1016/j.jbiomech.2018.12.037. Epub 2018 Dec 31.

PMID:
30642664
5.

Stochastically Timed Competition Between Division and Differentiation Fates Regulates the Transition From B Lymphoblast to Plasma Cell.

Zhou JHS, Markham JF, Duffy KR, Hodgkin PD.

Front Immunol. 2018 Sep 10;9:2053. doi: 10.3389/fimmu.2018.02053. eCollection 2018.

6.

Multiplexed Division Tracking Dyes for Proliferation-Based Clonal Lineage Tracing.

Horton MB, Prevedello G, Marchingo JM, Zhou JHS, Duffy KR, Heinzel S, Hodgkin PD.

J Immunol. 2018 Aug 1;201(3):1097-1103. doi: 10.4049/jimmunol.1800481. Epub 2018 Jun 18.

7.

Short periods of darkness fail to restore visual or neural plasticity in adult cats.

Holman KD, Duffy KR, Mitchell DE.

Vis Neurosci. 2018 Jan;35:E002. doi: 10.1017/S0952523817000335.

PMID:
29905119
8.

Mapping of neuron soma size as an effective approach to delineate differences between neural populations.

Lingley AJ, Bowdridge JC, Farivar R, Duffy KR.

J Neurosci Methods. 2018 Jul 1;304:126-135. doi: 10.1016/j.jneumeth.2018.04.018. Epub 2018 Apr 30.

PMID:
29715481
9.

Proliferation dynamics of acute myeloid leukaemia and haematopoietic progenitors competing for bone marrow space.

Akinduro O, Weber TS, Ang H, Haltalli MLR, Ruivo N, Duarte D, Rashidi NM, Hawkins ED, Duffy KR, Lo Celso C.

Nat Commun. 2018 Feb 6;9(1):519. doi: 10.1038/s41467-017-02376-5.

10.

A large-scale dataset of single and mixed-source short tandem repeat profiles to inform human identification strategies: PROVEDIt.

Alfonse LE, Garrett AD, Lun DS, Duffy KR, Grgicak CM.

Forensic Sci Int Genet. 2018 Jan;32:62-70. doi: 10.1016/j.fsigen.2017.10.006. Epub 2017 Oct 24.

PMID:
29091906
11.

Recovery from the anatomical effects of long-term monocular deprivation in cat lateral geniculate nucleus.

Duffy KR, Fong MF, Mitchell DE, Bear MF.

J Comp Neurol. 2018 Feb 1;526(2):310-323. doi: 10.1002/cne.24336. Epub 2017 Oct 27.

PMID:
29023717
12.

Production of high-fidelity electropherograms results in improved and consistent DNA interpretation: Standardizing the forensic validation process.

Peters KC, Swaminathan H, Sheehan J, Duffy KR, Lun DS, Grgicak CM.

Forensic Sci Int Genet. 2017 Nov;31:160-170. doi: 10.1016/j.fsigen.2017.09.005. Epub 2017 Sep 8.

PMID:
28950155
13.

Exploring STR signal in the single- and multicopy number regimes: Deductions from an in silico model of the entire DNA laboratory process.

Duffy KR, Gurram N, Peters KC, Wellner G, Grgicak CM.

Electrophoresis. 2017 Mar;38(6):855-868. doi: 10.1002/elps.201600385. Epub 2017 Jan 17.

PMID:
27981603
14.

T-cell stimuli independently sum to regulate an inherited clonal division fate.

Marchingo JM, Prevedello G, Kan A, Heinzel S, Hodgkin PD, Duffy KR.

Nat Commun. 2016 Nov 21;7:13540. doi: 10.1038/ncomms13540.

15.

Rapid recovery from the effects of early monocular deprivation is enabled by temporary inactivation of the retinas.

Fong MF, Mitchell DE, Duffy KR, Bear MF.

Proc Natl Acad Sci U S A. 2016 Dec 6;113(49):14139-14144. Epub 2016 Nov 17.

16.

Altered thalamocortical development in the SAP102 knockout model of intellectual disability.

Crocker-Buque A, Currie SP, Luz LL, Grant SG, Duffy KR, Kind PC, Daw MI.

Hum Mol Genet. 2016 Sep 15;25(18):4052-4061. doi: 10.1093/hmg/ddw244. Epub 2016 Jul 27.

17.

Retracing the in vivo haematopoietic tree using single-cell methods.

Perié L, Duffy KR.

FEBS Lett. 2016 Nov;590(22):4068-4083. doi: 10.1002/1873-3468.12299. Epub 2016 Jul 26. Review.

18.

Site-specific recombinatorics: in situ cellular barcoding with the Cre Lox system.

Weber TS, Dukes M, Miles DC, Glaser SP, Naik SH, Duffy KR.

BMC Syst Biol. 2016 Jun 30;10(1):43. doi: 10.1186/s12918-016-0290-3.

19.

Susceptibility to monocular deprivation following immersion in darkness either late into or beyond the critical period.

Duffy KR, Lingley AJ, Holman KD, Mitchell DE.

J Comp Neurol. 2016 Sep 1;524(13):2643-53. doi: 10.1002/cne.23985. Epub 2016 Mar 6.

PMID:
26878686
20.

Inferring average generation via division-linked labeling.

Weber TS, Perié L, Duffy KR.

J Math Biol. 2016 Aug;73(2):491-523. doi: 10.1007/s00285-015-0963-3. Epub 2016 Jan 5.

PMID:
26733310
21.

The Branching Point in Erythro-Myeloid Differentiation.

Perié L, Duffy KR, Kok L, de Boer RJ, Schumacher TN.

Cell. 2015 Dec 17;163(7):1655-62. doi: 10.1016/j.cell.2015.11.059.

22.

Recovery of visual functions in amblyopic animals following brief exposure to total darkness.

Mitchell DE, MacNeill K, Crowder NA, Holman K, Duffy KR.

J Physiol. 2016 Jan 1;594(1):149-67. doi: 10.1113/JP270981. Epub 2015 Nov 15.

23.

Postnatal accumulation of intermediate filaments in the cat and human primary visual cortex.

Song S, Mitchell DE, Crowder NA, Duffy KR.

J Comp Neurol. 2015 Oct 1;523(14):2111-26. doi: 10.1002/cne.23781. Epub 2015 May 12.

PMID:
25823892
24.

Ten days of darkness causes temporary blindness during an early critical period in felines.

Mitchell DE, Crowder NA, Holman K, Smithen M, Duffy KR.

Proc Biol Sci. 2015 Mar 22;282(1803):20142756. doi: 10.1098/rspb.2014.2756.

25.

Binocular eyelid closure promotes anatomical but not behavioral recovery from monocular deprivation.

Duffy KR, Bukhamseen DH, Smithen MJ, Mitchell DE.

Vision Res. 2015 Sep;114:151-60. doi: 10.1016/j.visres.2014.12.012. Epub 2014 Dec 20.

26.

T cell signaling. Antigen affinity, costimulation, and cytokine inputs sum linearly to amplify T cell expansion.

Marchingo JM, Kan A, Sutherland RM, Duffy KR, Wellard CJ, Belz GT, Lew AM, Dowling MR, Heinzel S, Hodgkin PD.

Science. 2014 Nov 28;346(6213):1123-7. doi: 10.1126/science.1260044.

27.

Why the immune system takes its chances with randomness.

Hodgkin PD, Dowling MR, Duffy KR.

Nat Rev Immunol. 2014 Oct;14(10):711. doi: 10.1038/nri3734-c1. Epub 2014 Sep 12. No abstract available.

PMID:
25212742
28.

The case from animal studies for balanced binocular treatment strategies for human amblyopia.

Mitchell DE, Duffy KR.

Ophthalmic Physiol Opt. 2014 Mar;34(2):129-45. doi: 10.1111/opo.12122. Review.

PMID:
24588531
29.

Determining lineage pathways from cellular barcoding experiments.

Perié L, Hodgkin PD, Naik SH, Schumacher TN, de Boer RJ, Duffy KR.

Cell Rep. 2014 Feb 27;6(4):617-24. doi: 10.1016/j.celrep.2014.01.016. Epub 2014 Feb 6.

30.

Shrinkage of X cells in the lateral geniculate nucleus after monocular deprivation revealed by FoxP2 labeling.

Duffy KR, Holman KD, Mitchell DE.

Vis Neurosci. 2014 May;31(3):253-61. doi: 10.1017/S0952523813000643. Epub 2014 Jan 30.

PMID:
24480423
31.

Darkness alters maturation of visual cortex and promotes fast recovery from monocular deprivation.

Duffy KR, Mitchell DE.

Curr Biol. 2013 Mar 4;23(5):382-6. doi: 10.1016/j.cub.2013.01.017. Epub 2013 Feb 14.

32.

Intracellular competition for fates in the immune system.

Duffy KR, Hodgkin PD.

Trends Cell Biol. 2012 Sep;22(9):457-64. doi: 10.1016/j.tcb.2012.05.004. Epub 2012 Jun 21. Review.

PMID:
22727035
33.

Recovery of neurofilament following early monocular deprivation.

O'Leary TP, Kutcher MR, Mitchell DE, Duffy KR.

Front Syst Neurosci. 2012 Apr 9;6:22. doi: 10.3389/fnsys.2012.00022. eCollection 2012.

34.

Activation-induced B cell fates are selected by intracellular stochastic competition.

Duffy KR, Wellard CJ, Markham JF, Zhou JH, Holmberg R, Hawkins ED, Hasbold J, Dowling MR, Hodgkin PD.

Science. 2012 Jan 20;335(6066):338-41. doi: 10.1126/science.1213230. Epub 2012 Jan 5.

35.

An in situ method for the examination of calcium-dependent proteolysis.

Duffy KR, Duffy MS.

J Neurosci Methods. 2011 Oct 15;201(2):333-9. doi: 10.1016/j.jneumeth.2011.08.017. Epub 2011 Aug 18.

PMID:
21871923
36.

Investigation of cytoskeleton proteins in neurons of the cat lateral geniculate nucleus.

Duffy KR, Crowder NA, LeDue EE.

J Comp Neurol. 2012 Jan 1;520(1):186-99. doi: 10.1002/cne.22727.

PMID:
21800310
37.

Preference for binocular concordant visual input in early postnatal development remains despite prior monocular deprivation.

Mitchell DE, Kennie J, Duffy KR.

Vision Res. 2011 Jun 21;51(12):1351-9. doi: 10.1016/j.visres.2011.04.011. Epub 2011 Apr 22.

38.

A minimum of two distinct heritable factors are required to explain correlation structures in proliferating lymphocytes.

Markham JF, Wellard CJ, Hawkins ED, Duffy KR, Hodgkin PD.

J R Soc Interface. 2010 Jul 6;7(48):1049-59. doi: 10.1098/rsif.2009.0488. Epub 2010 Jan 6.

39.

Monocular deprivation provokes alteration of the neuronal cytoskeleton in developing cat lateral geniculate nucleus.

Duffy KR, Slusar JE.

Vis Neurosci. 2009 May-Jun;26(3):319-28. doi: 10.1017/S0952523809090130. Epub 2009 Jun 11.

PMID:
19519963
40.

On the impact of correlation between collaterally consanguineous cells on lymphocyte population dynamics.

Duffy KR, Subramanian VG.

J Math Biol. 2009 Aug;59(2):255-85. doi: 10.1007/s00285-008-0231-x. Epub 2008 Oct 28.

PMID:
18956191
41.

Prolongation of cardiac allograft survival by rapamycin and the invariant natural killer T cell glycolipid agonist OCH.

Haeryfar SM, Lan Z, Leon-Ponte M, Duffy KR, Ge W, Liu W, Mele T, Garcia B, Wang H.

Transplantation. 2008 Aug 15;86(3):460-8. doi: 10.1097/TP.0b013e3181806b72.

PMID:
18698251
42.

Determining the expected variability of immune responses using the cyton model.

Subramanian VG, Duffy KR, Turner ML, Hodgkin PD.

J Math Biol. 2008 Jun;56(6):861-92. Epub 2007 Nov 3.

PMID:
17982747
43.

Cytoskeleton alteration correlates with gross structural plasticity in the cat lateral geniculate nucleus.

Kutcher MR, Duffy KR.

Vis Neurosci. 2007 Nov-Dec;24(6):775-85. Epub 2007 Oct 4.

PMID:
17915043
44.
45.

Cytochrome oxidase and neurofilament reactivity in monocularly deprived human primary visual cortex.

Duffy KR, Murphy KM, Frosch MP, Livingstone MS.

Cereb Cortex. 2007 Jun;17(6):1283-91. Epub 2006 Jul 10.

46.

Experience-dependent changes in NMDAR1 expression in the visual cortex of an animal model for amblyopia.

Murphy KM, Duffy KR, Jones DG.

Vis Neurosci. 2004 Jul-Aug;21(4):653-70.

PMID:
15579228
47.

Loss of neurofilament labeling in the primary visual cortex of monocularly deprived monkeys.

Duffy KR, Livingstone MS.

Cereb Cortex. 2005 Aug;15(8):1146-54. Epub 2004 Nov 24.

48.

End-stopping and the aperture problem: two-dimensional motion signals in macaque V1.

Pack CC, Livingstone MS, Duffy KR, Born RT.

Neuron. 2003 Aug 14;39(4):671-80.

50.

Development of cytochrome oxidase blobs in visual cortex of normal and visually deprived cats.

Murphy KM, Duffy KR, Jones DG, Mitchell DE.

Cereb Cortex. 2001 Feb;11(2):122-35.

PMID:
11208667

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