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Items: 18

1.

Schizont transcriptome variation among clinical isolates and laboratory-adapted clones of the malaria parasite Plasmodium falciparum.

Tarr SJ, Díaz-Ingelmo O, Stewart LB, Hocking SE, Murray L, Duffy CW, Otto TD, Chappell L, Rayner JC, Awandare GA, Conway DJ.

BMC Genomics. 2018 Dec 10;19(1):894. doi: 10.1186/s12864-018-5257-x.

2.

Multi-population genomic analysis of malaria parasites indicates local selection and differentiation at the gdv1 locus regulating sexual development.

Duffy CW, Amambua-Ngwa A, Ahouidi AD, Diakite M, Awandare GA, Ba H, Tarr SJ, Murray L, Stewart LB, D'Alessandro U, Otto TD, Kwiatkowski DP, Conway DJ.

Sci Rep. 2018 Oct 25;8(1):15763. doi: 10.1038/s41598-018-34078-3.

3.

Long read assemblies of geographically dispersed Plasmodium falciparum isolates reveal highly structured subtelomeres.

Otto TD, Böhme U, Sanders M, Reid A, Bruske EI, Duffy CW, Bull PC, Pearson RD, Abdi A, Dimonte S, Stewart LB, Campino S, Kekre M, Hamilton WL, Claessens A, Volkman SK, Ndiaye D, Amambua-Ngwa A, Diakite M, Fairhurst RM, Conway DJ, Franck M, Newbold CI, Berriman M.

Wellcome Open Res. 2018 May 3;3:52. doi: 10.12688/wellcomeopenres.14571.1. eCollection 2018.

4.

Checks and balances? DNA replication and the cell cycle in Plasmodium.

Matthews H, Duffy CW, Merrick CJ.

Parasit Vectors. 2018 Mar 27;11(1):216. doi: 10.1186/s13071-018-2800-1. Review.

5.

Genome-wide mosaicism in divergence between zoonotic malaria parasite subpopulations with separate sympatric transmission cycles.

Divis PCS, Duffy CW, Kadir KA, Singh B, Conway DJ.

Mol Ecol. 2018 Feb;27(4):860-870. doi: 10.1111/mec.14477. Epub 2018 Feb 13.

6.

Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution.

Duffy CW, Ba H, Assefa S, Ahouidi AD, Deh YB, Tandia A, Kirsebom FCM, Kwiatkowski DP, Conway DJ.

Mol Ecol. 2017 Jun;26(11):2880-2894. doi: 10.1111/mec.14066. Epub 2017 Mar 15.

7.

[Evaluation of malaria rapid diagnostic test Optimal-IT® pLDH along the Plasmodium falciparum distribution limit in Mauritania].

Ba H, Ahouidi AD, Duffy CW, Deh YB, Diedhiou C, Tandia A, Diallo MY, Assefa S, Lô BB, Elkory MB, Conway DJ.

Bull Soc Pathol Exot. 2017 Feb;110(1):31-37. doi: 10.1007/s13149-017-0541-y. Epub 2016 Dec 29. French.

8.

Microsatellite genotyping and genome-wide single nucleotide polymorphism-based indices of Plasmodium falciparum diversity within clinical infections.

Murray L, Mobegi VA, Duffy CW, Assefa SA, Kwiatkowski DP, Laman E, Loua KM, Conway DJ.

Malar J. 2016 May 12;15(1):275. doi: 10.1186/s12936-016-1324-4.

9.

Widespread distribution of Plasmodium vivax malaria in Mauritania on the interface of the Maghreb and West Africa.

Ba H, Duffy CW, Ahouidi AD, Deh YB, Diallo MY, Tandia A, Conway DJ.

Malar J. 2016 Feb 9;15:80. doi: 10.1186/s12936-016-1118-8.

10.

Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi.

Assefa S, Lim C, Preston MD, Duffy CW, Nair MB, Adroub SA, Kadir KA, Goldberg JM, Neafsey DE, Divis P, Clark TG, Duraisingh MT, Conway DJ, Pain A, Singh B.

Proc Natl Acad Sci U S A. 2015 Oct 20;112(42):13027-32. doi: 10.1073/pnas.1509534112. Epub 2015 Oct 5.

11.

Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity.

Duffy CW, Assefa SA, Abugri J, Amoako N, Owusu-Agyei S, Anyorigiya T, MacInnis B, Kwiatkowski DP, Conway DJ, Awandare GA.

BMC Genomics. 2015 Jul 16;16:527. doi: 10.1186/s12864-015-1746-3.

12.

Admixture in Humans of Two Divergent Plasmodium knowlesi Populations Associated with Different Macaque Host Species.

Divis PC, Singh B, Anderios F, Hisam S, Matusop A, Kocken CH, Assefa SA, Duffy CW, Conway DJ.

PLoS Pathog. 2015 May 28;11(5):e1004888. doi: 10.1371/journal.ppat.1004888. eCollection 2015 May.

13.

Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity.

Mobegi VA, Duffy CW, Amambua-Ngwa A, Loua KM, Laman E, Nwakanma DC, MacInnis B, Aspeling-Jones H, Murray L, Clark TG, Kwiatkowski DP, Conway DJ.

Mol Biol Evol. 2014 Jun;31(6):1490-9. doi: 10.1093/molbev/msu106. Epub 2014 Mar 18.

14.

Changes in malaria parasite drug resistance in an endemic population over a 25-year period with resulting genomic evidence of selection.

Nwakanma DC, Duffy CW, Amambua-Ngwa A, Oriero EC, Bojang KA, Pinder M, Drakeley CJ, Sutherland CJ, Milligan PJ, Macinnis B, Kwiatkowski DP, Clark TG, Greenwood BM, Conway DJ.

J Infect Dis. 2014 Apr 1;209(7):1126-35. doi: 10.1093/infdis/jit618. Epub 2013 Nov 21.

15.

Population genetics of Trypanosoma brucei rhodesiense: clonality and diversity within and between foci.

Duffy CW, MacLean L, Sweeney L, Cooper A, Turner CM, Tait A, Sternberg J, Morrison LJ, MacLeod A.

PLoS Negl Trop Dis. 2013 Nov 14;7(11):e2526. doi: 10.1371/journal.pntd.0002526. eCollection 2013 Nov.

16.

Human and animal Trypanosomes in Côte d'Ivoire form a single breeding population.

Capewell P, Cooper A, Duffy CW, Tait A, Turner CM, Gibson W, Mehlitz D, Macleod A.

PLoS One. 2013 Jul 2;8(7):e67852. doi: 10.1371/journal.pone.0067852. Print 2013.

17.

Trypanosome genetics: populations, phenotypes and diversity.

Tait A, Morrison LJ, Duffy CW, Cooper A, Turner CM, Macleod A.

Vet Parasitol. 2011 Sep 8;181(1):61-8. doi: 10.1016/j.vetpar.2011.04.024. Epub 2011 Apr 19.

PMID:
21570772
18.

Trypanosoma vivax displays a clonal population structure.

Duffy CW, Morrison LJ, Black A, Pinchbeck GL, Christley RM, Schoenefeld A, Tait A, Turner CM, MacLeod A.

Int J Parasitol. 2009 Nov;39(13):1475-83. doi: 10.1016/j.ijpara.2009.05.012. Epub 2009 Jun 8.

PMID:
19520081

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