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Nanostructured Materials for Food Applications: Spectroscopy, Microscopy and Physical Properties.

Sharma S, Jaiswal S, Duffy B, Jaiswal AK.

Bioengineering (Basel). 2019 Mar 19;6(1). pii: E26. doi: 10.3390/bioengineering6010026. Review.


Pantocin A, a peptide-derived antibiotic involved in biological control by plant-associated Pantoea species.

Smits THM, Duffy B, Blom J, Ishimaru CA, Stockwell VO.

Arch Microbiol. 2019 Aug;201(6):713-722. doi: 10.1007/s00203-019-01647-7. Epub 2019 Mar 13. Review.


Discovery of Small-Molecule Antibiotics against a Unique tRNA-Mediated Regulation of Transcription in Gram-Positive Bacteria.

Frohlich KM, Weintraub SF, Bell JT, Todd GC, Väre VYP, Schneider R, Kloos ZA, Tabe ES, Cantara WA, Stark CJ, Onwuanaibe UJ, Duffy BC, Basanta-Sanchez M, Kitchen DB, McDonough KA, Agris PF.

ChemMedChem. 2019 Apr 3;14(7):758-769. doi: 10.1002/cmdc.201800744. Epub 2019 Mar 1.


Cochlear Implantation in Postlingually Deaf Adults is Time-sensitive Towards Positive Outcome: Prediction using Advanced Machine Learning Techniques.

Kim H, Kang WS, Park HJ, Lee JY, Park JW, Kim Y, Seo JW, Kwak MY, Kang BC, Yang CJ, Duffy BA, Cho YS, Lee SY, Suh MW, Moon IJ, Ahn JH, Cho YS, Oh SH, Chung JW.

Sci Rep. 2018 Dec 20;8(1):18004. doi: 10.1038/s41598-018-36404-1.


Carbon monofilament electrodes for unit recording and functional MRI in same subjects.

Chuapoco MR, Choy M, Schmid F, Duffy BA, Lee HJ, Lee JH.

Neuroimage. 2019 Feb 1;186:806-816. doi: 10.1016/j.neuroimage.2018.10.082. Epub 2018 Nov 2.


Evidence for magmatic carbon bias in 14C dating of the Taupo and other major eruptions.

Holdaway RN, Duffy B, Kennedy B.

Nat Commun. 2018 Oct 5;9(1):4110. doi: 10.1038/s41467-018-06357-0.


Design and Characterization of Novel Covalent Bromodomain and Extra-Terminal Domain (BET) Inhibitors Targeting a Methionine.

Kharenko OA, Patel RG, Brown SD, Calosing C, White A, Lakshminarasimhan D, Suto RK, Duffy BC, Kitchen DB, McLure KG, Hansen HC, van der Horst EH, Young PR.

J Med Chem. 2018 Sep 27;61(18):8202-8211. doi: 10.1021/acs.jmedchem.8b00666. Epub 2018 Sep 13.


Enhanced corrosion resistance and cytocompatibility of biomimetic hyaluronic acid functionalised silane coating on AZ31 Mg alloy for orthopaedic applications.

Agarwal S, Labour MN, Hoey D, Duffy B, Curtin J, Jaiswal S.

J Mater Sci Mater Med. 2018 Aug 28;29(9):144. doi: 10.1007/s10856-018-6150-5.


Diffusion of innovation and longitudinal integrated clerkships: Results of the clerkship directors in internal medicine annual survey.

Mazotti L, Adams J, Peyser B, Chretien K, Duffy B, Hirsh DA.

Med Teach. 2019 Mar;41(3):347-353. doi: 10.1080/0142159X.2018.1472369. Epub 2018 May 25.


Accurate Typing of Human Leukocyte Antigen Class I Genes by Oxford Nanopore Sequencing.

Liu C, Xiao F, Hoisington-Lopez J, Lang K, Quenzel P, Duffy B, Mitra RD.

J Mol Diagn. 2018 Jul;20(4):428-435. doi: 10.1016/j.jmoldx.2018.02.006. Epub 2018 Apr 3.


Enhanced Water Barrier Properties of Surfactant-Free Polymer Films Obtained by MacroRAFT-Mediated Emulsion Polymerization.

Martín-Fabiani I, Lesage de la Haye J, Schulz M, Liu Y, Lee M, Duffy B, D'Agosto F, Lansalot M, Keddie JL.

ACS Appl Mater Interfaces. 2018 Apr 4;10(13):11221-11232. doi: 10.1021/acsami.8b01040. Epub 2018 Mar 21.


Interactive value-based curriculum: a pilot study.

Bowman Peterson JM, Duffy B, Duran A, Gladding SP.

Clin Teach. 2019 Feb;16(1):64-70. doi: 10.1111/tct.12771. Epub 2018 Mar 6.


Advection and Taylor-Aris dispersion in rivulet flow.

Al Mukahal FHH, Duffy BR, Wilson SK.

Proc Math Phys Eng Sci. 2017 Nov;473(2207):20170524. doi: 10.1098/rspa.2017.0524. Epub 2017 Nov 15.


The Prevention and Recognition of Ulnar Nerve and Brachial Plexus Injuries.

Duffy BJ, Tubog TD.

J Perianesth Nurs. 2017 Dec;32(6):636-649. doi: 10.1016/j.jopan.2016.06.005. Epub 2017 Apr 14. Review.


Accelerated humoral renal allograft rejection due to HLA-C14 mediated allosensitization to HLA-Bw6.

Persaud SP, Duffy B, Phelan DL, Mohanakumar T, Delos Santos R, Gaut JP, Liu C.

Hum Immunol. 2017 Nov;78(11-12):692-698. doi: 10.1016/j.humimm.2017.09.004. Epub 2017 Oct 9.


Criterion-Based Assessment in a Norm-Based World: How Can We Move Past Grades?

Pereira AG, Woods M, Olson APJ, van den Hoogenhof S, Duffy BL, Englander R.

Acad Med. 2018 Apr;93(4):560-564. doi: 10.1097/ACM.0000000000001939.


Phylogenomic, Pan-genomic, Pathogenomic and Evolutionary Genomic Insights into the Agronomically Relevant Enterobacteria Pantoea ananatis and Pantoea stewartii.

De Maayer P, Aliyu H, Vikram S, Blom J, Duffy B, Cowan DA, Smits THM, Venter SN, Coutinho TA.

Front Microbiol. 2017 Sep 14;8:1755. doi: 10.3389/fmicb.2017.01755. eCollection 2017.


Role of the type VI secretion systems during disease interactions of Erwinia amylovora with its plant host.

Kamber T, Pothier JF, Pelludat C, Rezzonico F, Duffy B, Smits THM.

BMC Genomics. 2017 Aug 17;18(1):628. doi: 10.1186/s12864-017-4010-1.


Development and evaluation of a bioinformatics approach for designing molecular assays for viral detection.

Schneeberger PHH, Pothier JF, Bühlmann A, Duffy B, Beuret C, Utzinger J, Frey JE.

PLoS One. 2017 May 25;12(5):e0178195. doi: 10.1371/journal.pone.0178195. eCollection 2017.


Engineering of Bacteriophages Y2::dpoL1-C and Y2::luxAB for Efficient Control and Rapid Detection of the Fire Blight Pathogen, Erwinia amylovora.

Born Y, Fieseler L, Thöny V, Leimer N, Duffy B, Loessner MJ.

Appl Environ Microbiol. 2017 May 31;83(12). pii: e00341-17. doi: 10.1128/AEM.00341-17. Print 2017 Jun 15.


Rapid detection of donor cell free DNA in lung transplant recipients with rejections using donor-recipient HLA mismatch.

Zou J, Duffy B, Slade M, Young AL, Steward N, Hachem R, Mohanakumar T.

Hum Immunol. 2017 Apr;78(4):342-349. doi: 10.1016/j.humimm.2017.03.002. Epub 2017 Mar 4.


Phylogenomic resolution of the bacterial genus Pantoea and its relationship with Erwinia and Tatumella.

Palmer M, Steenkamp ET, Coetzee MPA, Chan WY, van Zyl E, De Maayer P, Coutinho TA, Blom J, Smits THM, Duffy B, Venter SN.

Antonie Van Leeuwenhoek. 2017 Oct;110(10):1287-1309. doi: 10.1007/s10482-017-0852-4. Epub 2017 Mar 2.


Incomplete Infection of Secondarily Infected Potato Plants - an Environment Dependent Underestimated Mechanism in Plant Virology.

Bertschinger L, Bühler L, Dupuis B, Duffy B, Gessler C, Forbes GA, Keller ER, Scheidegger UC, Struik PC.

Front Plant Sci. 2017 Feb 3;8:74. doi: 10.3389/fpls.2017.00074. eCollection 2017.


Describing Failure in a Clinical Clerkship: Implications for Identification, Assessment and Remediation for Struggling Learners.

Nixon LJ, Gladding SP, Duffy BL.

J Gen Intern Med. 2017 Apr;32(4):379. doi: 10.1007/s11606-016-3978-6. No abstract available.


MyPOD: an EMR-Based Tool that Facilitates Quality Improvement and Maintenance of Certification.

Berman L, Duffy B, Randall Brenn B, Vinocur C.

J Med Syst. 2017 Mar;41(3):39. doi: 10.1007/s10916-017-0686-7. Epub 2017 Jan 19.


Comparison of fMRI analysis methods for heterogeneous BOLD responses in block design studies.

Liu J, Duffy BA, Bernal-Casas D, Fang Z, Lee JH.

Neuroimage. 2017 Feb 15;147:390-408. doi: 10.1016/j.neuroimage.2016.12.045. Epub 2016 Dec 16.


Dynamic response of a thin sessile drop of conductive liquid to an abruptly applied or removed electric field.

Corson LT, Mottram NJ, Duffy BR, Wilson SK, Tsakonas C, Brown CV.

Phys Rev E. 2016 Oct;94(4-1):043112. Epub 2016 Oct 24.


Biodegradable magnesium alloys for orthopaedic applications: A review on corrosion, biocompatibility and surface modifications.

Agarwal S, Curtin J, Duffy B, Jaiswal S.

Mater Sci Eng C Mater Biol Appl. 2016 Nov 1;68:948-963. doi: 10.1016/j.msec.2016.06.020. Epub 2016 Jun 10. Review.


Optogenetic study of networks in epilepsy.

Choy M, Duffy BA, Lee JH.

J Neurosci Res. 2017 Dec;95(12):2325-2335. doi: 10.1002/jnr.23767. Epub 2016 Jul 14. Review.


Activation of Direct and Indirect Pathway Medium Spiny Neurons Drives Distinct Brain-wide Responses.

Lee HJ, Weitz AJ, Bernal-Casas D, Duffy BA, Choy M, Kravitz AV, Kreitzer AC, Lee JH.

Neuron. 2016 Jul 20;91(2):412-24. doi: 10.1016/j.neuron.2016.06.010. Epub 2016 Jun 30.


Describing Failure in a Clinical Clerkship: Implications for Identification, Assessment and Remediation for Struggling Learners.

Nixon LJ, Gladding SP, Duffy BL.

J Gen Intern Med. 2016 Oct;31(10):1172-9. doi: 10.1007/s11606-016-3758-3. Epub 2016 Jun 6.


Fluid-dynamical model for antisurfactants.

Conn JJ, Duffy BR, Pritchard D, Wilson SK, Halling PJ, Sefiane K.

Phys Rev E. 2016 Apr;93:043121. doi: 10.1103/PhysRevE.93.043121. Epub 2016 Apr 19.


Laparoscopic Excision of Congenital Hepatic Cysts in the Pediatric Population: A Case Series and Literature Review.

Linden AF, Pulcrano ME, Duffy BJ, Lange PA, Tsung DY, Hartman GE, Kane T, Chahine AA.

J Laparoendosc Adv Surg Tech A. 2016 Jun;26(6):493-7. doi: 10.1089/lap.2016.0115. Epub 2016 May 5. Review.


Protection of Erwinia amylovora bacteriophage Y2 from UV-induced damage by natural compounds.

Born Y, Bosshard L, Duffy B, Loessner MJ, Fieseler L.

Bacteriophage. 2015 Jul 24;5(4):e1074330. eCollection 2015 Oct-Dec.


Insect pathogenicity in plant-beneficial pseudomonads: phylogenetic distribution and comparative genomics.

Flury P, Aellen N, Ruffner B, Péchy-Tarr M, Fataar S, Metla Z, Dominguez-Ferreras A, Bloemberg G, Frey J, Goesmann A, Raaijmakers JM, Duffy B, Höfte M, Blom J, Smits TH, Keel C, Maurhofer M.

ISME J. 2016 Oct;10(10):2527-42. doi: 10.1038/ismej.2016.5. Epub 2016 Feb 19.


Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defense responses to Erwinia amylovora pathogen infection.

Kamber T, Buchmann JP, Pothier JF, Smits TH, Wicker T, Duffy B.

Sci Rep. 2016 Feb 17;6:21600. doi: 10.1038/srep21600.


Parental Perspectives of Communication at the End of Life at a Pediatric Oncology Institution.

Snaman JM, Torres C, Duffy B, Levine DR, Gibson DV, Baker JN.

J Palliat Med. 2016 Mar;19(3):326-32. doi: 10.1089/jpm.2015.0253. Epub 2016 Feb 10.


Maternal T-Cell Engraftment Interferes With Human Leukocyte Antigen Typing in Severe Combined Immunodeficiency.

Liu C, Duffy B, Bednarski JJ, Calhoun C, Lay L, Rundblad B, Payton JE, Mohanakumar T.

Am J Clin Pathol. 2016 Feb;145(2):251-7. doi: 10.1093/ajcp/aqv079. Epub 2016 Feb 1.


Erwinia gerundensis sp. nov., a cosmopolitan epiphyte originally isolated from pome fruit trees.

Rezzonico F, Smits THM, Born Y, Blom J, Frey JE, Goesmann A, Cleenwerck I, de Vos P, Bonaterra A, Duffy B, Montesinos E.

Int J Syst Evol Microbiol. 2016 Mar;66(3):1583-1592. doi: 10.1099/ijsem.0.000920. Epub 2016 Jan 26.


Formation of DPM ethers using O-diphenylmethyl trichloroacetimidate under thermal conditions.

Howard KT, Duffy BC, Linaburg MR, Chisholm JD.

Org Biomol Chem. 2016 Feb 7;14(5):1623-8. doi: 10.1039/c5ob02455b.


Draft Genome Sequence of the Commercial Biocontrol Strain Pantoea agglomerans P10c.

Smits TH, Rezzonico F, Blom J, Goesmann A, Abelli A, Kron Morelli R, Vanneste JL, Duffy B.

Genome Announc. 2015 Dec 10;3(6). pii: e01448-15. doi: 10.1128/genomeA.01448-15.


Metagenomic diagnostics for the simultaneous detection of multiple pathogens in human stool specimens from Côte d'Ivoire: a proof-of-concept study.

Schneeberger PHH, Becker SL, Pothier JF, Duffy B, N'Goran EK, Beuret C, Frey JE, Utzinger J.

Infect Genet Evol. 2016 Jun;40:389-397. doi: 10.1016/j.meegid.2015.08.044. Epub 2015 Sep 25.


Glyph-Based Video Visualization for Semen Analysis.

Duffy B, Thiyagalingam J, Walton S, Smith DJ, Trefethen A, Kirkman-Brown JC, Gaffney EA, Min Chen.

IEEE Trans Vis Comput Graph. 2015 Aug;21(8):980-93. doi: 10.1109/TVCG.2013.265.


Bimodal Imaging of Inflammation with SPECT/CT and MRI Using Iodine-125 Labeled VCAM-1 Targeting Microparticle Conjugates.

Patel N, Duffy BA, Badar A, Lythgoe MF, Årstad E.

Bioconjug Chem. 2015 Aug 19;26(8):1542-9. doi: 10.1021/acs.bioconjchem.5b00380. Epub 2015 Aug 11.


MRI compatible optrodes for simultaneous LFP and optogenetic fMRI investigation of seizure-like afterdischarges.

Duffy BA, Choy M, Chuapoco MR, Madsen M, Lee JH.

Neuroimage. 2015 Dec;123:173-84. doi: 10.1016/j.neuroimage.2015.07.038. Epub 2015 Jul 21.


Integrative conjugative elements of the ICEPan family play a potential role in Pantoea ananatis ecological diversification and antibiosis.

De Maayer P, Chan WY, Martin DA, Blom J, Venter SN, Duffy B, Cowan DA, Smits TH, Coutinho TA.

Front Microbiol. 2015 Jun 8;6:576. doi: 10.3389/fmicb.2015.00576. eCollection 2015.


Complete Genome Sequence of the Cyanogenic Phosphate-Solubilizing Pseudomonas sp. Strain CCOS 191, a Close Relative of Pseudomonas mosselii.

Smits TH, Pothier JF, Ruinelli M, Blom J, Frasson D, Koechli C, Fabbri C, Brandl H, Duffy B, Sievers M.

Genome Announc. 2015 Jun 11;3(3). pii: e00616-15. doi: 10.1128/genomeA.00616-15.


Discovery of a new chemical series of BRD4(1) inhibitors using protein-ligand docking and structure-guided design.

Duffy BC, Liu S, Martin GS, Wang R, Hsia MM, Zhao H, Guo C, Ellis M, Quinn JF, Kharenko OA, Norek K, Gesner EM, Young PR, McLure KG, Wagner GS, Lakshminarasimhan D, White A, Suto RK, Hansen HC, Kitchen DB.

Bioorg Med Chem Lett. 2015 Jul 15;25(14):2818-23. doi: 10.1016/j.bmcl.2015.04.107. Epub 2015 May 11.


Teaching high-value care: a novel morning report.

Bowman J, Duran A, Duffy B, Gladding S, Baum K.

Clin Teach. 2015 Jun;12(3):165-70. doi: 10.1111/tct.12270.


Older people going online: its value and before-after evaluation of volunteer support.

Jones RB, Ashurst EJ, Atkey J, Duffy B.

J Med Internet Res. 2015 May 18;17(5):e122. doi: 10.2196/jmir.3943.

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