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Items: 25


Spatial parcellations, spectral filtering, and connectivity measures in fMRI: Optimizing for discrimination.

Sala-Llonch R, Smith SM, Woolrich M, Duff EP.

Hum Brain Mapp. 2018 Sep 26. doi: 10.1002/hbm.24381. [Epub ahead of print]


Artificial limb representation in amputees.

van den Heiligenberg FMZ, Orlov T, Macdonald SN, Duff EP, Henderson Slater D, Beckmann CF, Johansen-Berg H, Culham JC, Makin TR.

Brain. 2018 May 1;141(5):1422-1433. doi: 10.1093/brain/awy054.


Disambiguating brain functional connectivity.

Duff EP, Makin T, Cottaar M, Smith SM, Woolrich MW.

Neuroimage. 2018 Jun;173:540-550. doi: 10.1016/j.neuroimage.2018.01.053. Epub 2018 Feb 21.


The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction.

Makropoulos A, Robinson EC, Schuh A, Wright R, Fitzgibbon S, Bozek J, Counsell SJ, Steinweg J, Vecchiato K, Passerat-Palmbach J, Lenz G, Mortari F, Tenev T, Duff EP, Bastiani M, Cordero-Grande L, Hughes E, Tusor N, Tournier JD, Hutter J, Price AN, Teixeira RPAG, Murgasova M, Victor S, Kelly C, Rutherford MA, Smith SM, Edwards AD, Hajnal JV, Jenkinson M, Rueckert D.

Neuroimage. 2018 Jun;173:88-112. doi: 10.1016/j.neuroimage.2018.01.054. Epub 2018 Jan 31.


Disambiguating pharmacological mechanisms from placebo in neuropathic pain using functional neuroimaging.

Wanigasekera V, Wartolowska K, Huggins JP, Duff EP, Vennart W, Whitlock M, Massat N, Pauer L, Rogers P, Hoggart B, Tracey I.

Br J Anaesth. 2018 Feb;120(2):299-307. doi: 10.1016/j.bja.2017.11.064. Epub 2017 Nov 21.


Low-threshold mechanoreceptors play a frequency-dependent dual role in subjective ratings of mechanical allodynia.

Löken LS, Duff EP, Tracey I.

J Neurophysiol. 2017 Dec 1;118(6):3360-3369. doi: 10.1152/jn.00977.2016. Epub 2017 Sep 27.


Nociceptive brain activity as a measure of analgesic efficacy in infants.

Hartley C, Duff EP, Green G, Mellado GS, Worley A, Rogers R, Slater R.

Sci Transl Med. 2017 May 3;9(388). pii: eaah6122. doi: 10.1126/scitranslmed.aah6122.


Biomarkers, designs, and interpretations of resting-state fMRI in translational pharmacological research: A review of state-of-the-Art, challenges, and opportunities for studying brain chemistry.

Khalili-Mahani N, Rombouts SA, van Osch MJ, Duff EP, Carbonell F, Nickerson LD, Becerra L, Dahan A, Evans AC, Soucy JP, Wise R, Zijdenbos AP, van Gerven JM.

Hum Brain Mapp. 2017 Apr;38(4):2276-2325. doi: 10.1002/hbm.23516. Epub 2017 Feb 1. Review.


Hand classification of fMRI ICA noise components.

Griffanti L, Douaud G, Bijsterbosch J, Evangelisti S, Alfaro-Almagro F, Glasser MF, Duff EP, Fitzgibbon S, Westphal R, Carone D, Beckmann CF, Smith SM.

Neuroimage. 2017 Jul 1;154:188-205. doi: 10.1016/j.neuroimage.2016.12.036. Epub 2016 Dec 16.


Optimal echo time for functional MRI of the infant brain identified in response to noxious stimulation.

Goksan S, Hartley C, Hurley SA, Winkler AM, Duff EP, Jenkinson M, Rogers R, Clare S, Slater R.

Magn Reson Med. 2017 Aug;78(2):625-631. doi: 10.1002/mrm.26455. Epub 2016 Sep 21.


The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments.

Gorgolewski KJ, Auer T, Calhoun VD, Craddock RC, Das S, Duff EP, Flandin G, Ghosh SS, Glatard T, Halchenko YO, Handwerker DA, Hanke M, Keator D, Li X, Michael Z, Maumet C, Nichols BN, Nichols TE, Pellman J, Poline JB, Rokem A, Schaefer G, Sochat V, Triplett W, Turner JA, Varoquaux G, Poldrack RA.

Sci Data. 2016 Jun 21;3:160044. doi: 10.1038/sdata.2016.44.


The brain functional connectome is robustly altered by lack of sleep.

Kaufmann T, Elvsåshagen T, Alnæs D, Zak N, Pedersen PØ, Norbom LB, Quraishi SH, Tagliazucchi E, Laufs H, Bjørnerud A, Malt UF, Andreassen OA, Roussos E, Duff EP, Smith SM, Groote IR, Westlye LT.

Neuroimage. 2016 Feb 15;127:324-332. doi: 10.1016/j.neuroimage.2015.12.028. Epub 2015 Dec 19.


Disintegration of Sensorimotor Brain Networks in Schizophrenia.

Kaufmann T, Skåtun KC, Alnæs D, Doan NT, Duff EP, Tønnesen S, Roussos E, Ueland T, Aminoff SR, Lagerberg TV, Agartz I, Melle IS, Smith SM, Andreassen OA, Westlye LT.

Schizophr Bull. 2015 Nov;41(6):1326-35. doi: 10.1093/schbul/sbv060. Epub 2015 May 4.


The relative phases of basal ganglia activities dynamically shape effective connectivity in Parkinson's disease.

Cagnan H, Duff EP, Brown P.

Brain. 2015 Jun;138(Pt 6):1667-78. doi: 10.1093/brain/awv093. Epub 2015 Apr 16.


Network-level reorganisation of functional connectivity following arm amputation.

Makin TR, Filippini N, Duff EP, Henderson Slater D, Tracey I, Johansen-Berg H.

Neuroimage. 2015 Jul 1;114:217-25. doi: 10.1016/j.neuroimage.2015.02.067. Epub 2015 Mar 14.


Learning to identify CNS drug action and efficacy using multistudy fMRI data.

Duff EP, Vennart W, Wise RG, Howard MA, Harris RE, Lee M, Wartolowska K, Wanigasekera V, Wilson FJ, Whitlock M, Tracey I, Woolrich MW, Smith SM.

Sci Transl Med. 2015 Feb 11;7(274):274ra16. doi: 10.1126/scitranslmed.3008438.


Attentional load modulates large-scale functional brain connectivity beyond the core attention networks.

Alnæs D, Kaufmann T, Richard G, Duff EP, Sneve MH, Endestad T, Nordvik JE, Andreassen OA, Smith SM, Westlye LT.

Neuroimage. 2015 Apr 1;109:260-72. doi: 10.1016/j.neuroimage.2015.01.026. Epub 2015 Jan 13.


A common brain network links development, aging, and vulnerability to disease.

Douaud G, Groves AR, Tamnes CK, Westlye LT, Duff EP, Engvig A, Walhovd KB, James A, Gass A, Monsch AU, Matthews PM, Fjell AM, Smith SM, Johansen-Berg H.

Proc Natl Acad Sci U S A. 2014 Dec 9;111(49):17648-53. doi: 10.1073/pnas.1410378111. Epub 2014 Nov 24.


First steps in using machine learning on fMRI data to predict intrusive memories of traumatic film footage.

Clark IA, Niehaus KE, Duff EP, Di Simplicio MC, Clifford GD, Smith SM, Mackay CE, Woolrich MW, Holmes EA.

Behav Res Ther. 2014 Nov;62:37-46. doi: 10.1016/j.brat.2014.07.010. Epub 2014 Aug 4.


Task-driven ICA feature generation for accurate and interpretable prediction using fMRI.

Duff EP, Trachtenberg AJ, Mackay CE, Howard MA, Wilson F, Smith SM, Woolrich MW.

Neuroimage. 2012 Mar;60(1):189-203. doi: 10.1016/j.neuroimage.2011.12.053. Epub 2011 Dec 29.


The effects of APOE on brain activity do not simply reflect the risk of Alzheimer's disease.

Trachtenberg AJ, Filippini N, Cheeseman J, Duff EP, Neville MJ, Ebmeier KP, Karpe F, Mackay CE.

Neurobiol Aging. 2012 Mar;33(3):618.e1-618.e13. doi: 10.1016/j.neurobiolaging.2010.11.011. Epub 2011 Jan 12.


Long-term motor training induced changes in regional cerebral blood flow in both task and resting states.

Xiong J, Ma L, Wang B, Narayana S, Duff EP, Egan GF, Fox PT.

Neuroimage. 2009 Mar 1;45(1):75-82. doi: 10.1016/j.neuroimage.2008.11.016. Epub 2008 Dec 3.


The power of spectral density analysis for mapping endogenous BOLD signal fluctuations.

Duff EP, Johnston LA, Xiong J, Fox PT, Mareels I, Egan GF.

Hum Brain Mapp. 2008 Jul;29(7):778-90. doi: 10.1002/hbm.20601.


REX: response exploration for neuroimaging datasets.

Duff EP, Cunnington R, Egan GF.

Neuroinformatics. 2007 Winter;5(4):223-34. Epub 2007 Nov 6.


Pain sensitivity and fMRI pain-related brain activity in Alzheimer's disease.

Cole LJ, Farrell MJ, Duff EP, Barber JB, Egan GF, Gibson SJ.

Brain. 2006 Nov;129(Pt 11):2957-65. Epub 2006 Sep 2.


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