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Items: 35


On the evolution and physiology of cable bacteria.

Kjeldsen KU, Schreiber L, Thorup CA, Boesen T, Bjerg JT, Yang T, Dueholm MS, Larsen S, Risgaard-Petersen N, Nierychlo M, Schmid M, Bøggild A, van de Vossenberg J, Geelhoed JS, Meysman FJR, Wagner M, Nielsen PH, Nielsen LP, Schramm A.

Proc Natl Acad Sci U S A. 2019 Sep 17;116(38):19116-19125. doi: 10.1073/pnas.1903514116. Epub 2019 Aug 19.


The Proteome of Tetrasphaera elongata is adapted to Changing Conditions in Wastewater Treatment Plants.

Herbst FA, Dueholm MS, Wimmer R, Nielsen PH.

Proteomes. 2019 Apr 25;7(2). pii: E16. doi: 10.3390/proteomes7020016.


Extracellular polymeric substances of biofilms: Suffering from an identity crisis.

Seviour T, Derlon N, Dueholm MS, Flemming HC, Girbal-Neuhauser E, Horn H, Kjelleberg S, van Loosdrecht MCM, Lotti T, Malpei MF, Nerenberg R, Neu TR, Paul E, Yu H, Lin Y.

Water Res. 2019 Mar 15;151:1-7. doi: 10.1016/j.watres.2018.11.020. Epub 2018 Nov 28. Review.


The Sheaths of Methanospirillum Are Made of a New Type of Amyloid Protein.

Christensen LFB, Hansen LM, Finster K, Christiansen G, Nielsen PH, Otzen DE, Dueholm MS.

Front Microbiol. 2018 Nov 13;9:2729. doi: 10.3389/fmicb.2018.02729. eCollection 2018.


Novel prosthecate bacteria from the candidate phylum Acetothermia.

Hao L, McIlroy SJ, Kirkegaard RH, Karst SM, Fernando WEY, Aslan H, Meyer RL, Albertsen M, Nielsen PH, Dueholm MS.

ISME J. 2018 Sep;12(9):2225-2237. doi: 10.1038/s41396-018-0187-9. Epub 2018 Jun 8.


Genomic and in Situ Analyses Reveal the Micropruina spp. as Abundant Fermentative Glycogen Accumulating Organisms in Enhanced Biological Phosphorus Removal Systems.

McIlroy SJ, Onetto CA, McIlroy B, Herbst FA, Dueholm MS, Kirkegaard RH, Fernando E, Karst SM, Nierychlo M, Kristensen JM, Eales KL, Grbin PR, Wimmer R, Nielsen PH.

Front Microbiol. 2018 May 23;9:1004. doi: 10.3389/fmicb.2018.01004. eCollection 2018.


High-Quality Draft Genome Sequence of Sphaerisporangium cinnabarinum ATCC 31213.

Christensen LFB, Otzen D, Dueholm MS.

Genome Announc. 2018 May 24;6(21). pii: e00456-18. doi: 10.1128/genomeA.00456-18.


Ecology and Biogenesis of Functional Amyloids in Pseudomonas.

Rouse SL, Matthews SJ, Dueholm MS.

J Mol Biol. 2018 Oct 12;430(20):3685-3695. doi: 10.1016/j.jmb.2018.05.004. Epub 2018 May 16. Review.


Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias.

Karst SM, Dueholm MS, McIlroy SJ, Kirkegaard RH, Nielsen PH, Albertsen M.

Nat Biotechnol. 2018 Feb;36(2):190-195. doi: 10.1038/nbt.4045. Epub 2018 Jan 1.


The impact of immigration on microbial community composition in full-scale anaerobic digesters.

Kirkegaard RH, McIlroy SJ, Kristensen JM, Nierychlo M, Karst SM, Dueholm MS, Albertsen M, Nielsen PH.

Sci Rep. 2017 Aug 24;7(1):9343. doi: 10.1038/s41598-017-09303-0.


Direct Identification of Functional Amyloid Proteins by Label-Free Quantitative Mass Spectrometry.

Danielsen HN, Hansen SH, Herbst FA, Kjeldal H, Stensballe A, Nielsen PH, Dueholm MS.

Biomolecules. 2017 Aug 4;7(3). pii: E58. doi: 10.3390/biom7030058.


Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge.

McIlroy SJ, Kirkegaard RH, Dueholm MS, Fernando E, Karst SM, Albertsen M, Nielsen PH.

Front Microbiol. 2017 Jun 23;8:1134. doi: 10.3389/fmicb.2017.01134. eCollection 2017.


Epigallocatechin Gallate Remodels Overexpressed Functional Amyloids in Pseudomonas aeruginosa and Increases Biofilm Susceptibility to Antibiotic Treatment.

Stenvang M, Dueholm MS, Vad BS, Seviour T, Zeng G, Geifman-Shochat S, Søndergaard MT, Christiansen G, Meyer RL, Kjelleberg S, Nielsen PH, Otzen DE.

J Biol Chem. 2016 Dec 16;291(51):26540-26553. Epub 2016 Oct 26.


Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters.

Kirkegaard RH, Dueholm MS, McIlroy SJ, Nierychlo M, Karst SM, Albertsen M, Nielsen PH.

ISME J. 2016 Oct;10(10):2352-64. doi: 10.1038/ismej.2016.43. Epub 2016 Apr 8.


Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge.

McIlroy SJ, Karst SM, Nierychlo M, Dueholm MS, Albertsen M, Kirkegaard RH, Seviour RJ, Nielsen PH.

ISME J. 2016 Sep;10(9):2223-34. doi: 10.1038/ismej.2016.14. Epub 2016 Feb 23.


The fungal community changes over time in developing wheat heads.

Hertz M, Jensen IR, Jensen LØ, Thomsen SN, Winde J, Dueholm MS, Sørensen LH, Wollenberg RD, Sørensen HO, Sondergaard TE, Sørensen JL.

Int J Food Microbiol. 2016 Apr 2;222:30-9. doi: 10.1016/j.ijfoodmicro.2016.01.018. Epub 2016 Jan 28.


Detection of Pathogenic Biofilms with Bacterial Amyloid Targeting Fluorescent Probe, CDy11.

Kim JY, Sahu S, Yau YH, Wang X, Shochat SG, Nielsen PH, Dueholm MS, Otzen DE, Lee J, Delos Santos MM, Yam JK, Kang NY, Park SJ, Kwon H, Seviour T, Yang L, Givskov M, Chang YT.

J Am Chem Soc. 2016 Jan 13;138(1):402-7. doi: 10.1021/jacs.5b11357. Epub 2016 Jan 4.


Functional bacterial amyloid increases Pseudomonas biofilm hydrophobicity and stiffness.

Zeng G, Vad BS, Dueholm MS, Christiansen G, Nilsson M, Tolker-Nielsen T, Nielsen PH, Meyer RL, Otzen DE.

Front Microbiol. 2015 Oct 7;6:1099. doi: 10.3389/fmicb.2015.01099. eCollection 2015.


Label-free quantification reveals major proteomic changes in Pseudomonas putida F1 during the exponential growth phase.

Herbst FA, Danielsen HN, Wimmer R, Nielsen PH, Dueholm MS.

Proteomics. 2015 Sep;15(18):3244-52. doi: 10.1002/pmic.201400482. Epub 2015 Aug 13.


The Tubular Sheaths Encasing Methanosaeta thermophila Filaments Are Functional Amyloids.

Dueholm MS, Larsen P, Finster K, Stenvang MR, Christiansen G, Vad BS, Bøggild A, Otzen DE, Nielsen PH.

J Biol Chem. 2015 Aug 14;290(33):20590-600. doi: 10.1074/jbc.M115.654780. Epub 2015 Jun 24.


Complete Genome Sequence of the Bacterium Aalborg_AAW-1, Representing a Novel Family within the Candidate Phylum SR1.

Dueholm MS, Albertsen M, Stokholm-Bjerregaard M, McIlroy SJ, Karst SM, Nielsen PH.

Genome Announc. 2015 Jun 11;3(3). pii: e00624-15. doi: 10.1128/genomeA.00624-15.


Survival and activity of individual bioaugmentation strains.

Dueholm MS, Marques IG, Karst SM, D'Imperio S, Tale VP, Lewis D, Nielsen PH, Nielsen JL.

Bioresour Technol. 2015 Jun;186:192-199. doi: 10.1016/j.biortech.2015.02.111. Epub 2015 Mar 14.


Functional amyloids keep quorum-sensing molecules in check.

Seviour T, Hansen SH, Yang L, Yau YH, Wang VB, Stenvang MR, Christiansen G, Marsili E, Givskov M, Chen Y, Otzen DE, Nielsen PH, Geifman-Shochat S, Kjelleberg S, Dueholm MS.

J Biol Chem. 2015 Mar 6;290(10):6457-69. doi: 10.1074/jbc.M114.613810. Epub 2015 Jan 13.


Major proteomic changes associated with amyloid-induced biofilm formation in Pseudomonas aeruginosa PAO1.

Herbst FA, Søndergaard MT, Kjeldal H, Stensballe A, Nielsen PH, Dueholm MS.

J Proteome Res. 2015 Jan 2;14(1):72-81. doi: 10.1021/pr500938x. Epub 2014 Oct 31.


Complete Genome Sequence of Pseudomonas sp. UK4, a Model Organism for Studies of Functional Amyloids in Pseudomonas.

Dueholm MS, Danielsen HN, Nielsen PH.

Genome Announc. 2014 Sep 11;2(5). pii: e00898-14. doi: 10.1128/genomeA.00898-14.


Complete Genome Sequence of Actinobaculum schaalii Strain CCUG 27420.

Kristiansen R, Dueholm MS, Bank S, Nielsen PH, Karst SM, Cattoir V, Lienhard R, Grisold AJ, Olsen AB, Reinhard M, Søby KM, Christensen JJ, Prag J, Thomsen TR.

Genome Announc. 2014 Sep 4;2(5). pii: e00880-14. doi: 10.1128/genomeA.00880-14.


Complete Genome of Rhodococcus pyridinivorans SB3094, a Methyl-Ethyl-Ketone-Degrading Bacterium Used for Bioaugmentation.

Dueholm MS, Albertsen M, D'Imperio S, Tale VP, Lewis D, Nielsen PH, Nielsen JL.

Genome Announc. 2014 May 29;2(3). pii: e00525-14. doi: 10.1128/genomeA.00525-14.


Complete Genome Sequences of Pseudomonas monteilii SB3078 and SB3101, Two Benzene-, Toluene-, and Ethylbenzene-Degrading Bacteria Used for Bioaugmentation.

Dueholm MS, Albertsen M, D'Imperio S, Tale VP, Lewis D, Nielsen PH, Nielsen JL.

Genome Announc. 2014 May 29;2(3). pii: e00524-14. doi: 10.1128/genomeA.00524-14.


Evolutionary insight into the functional amyloids of the pseudomonads.

Dueholm MS, Otzen D, Nielsen PH.

PLoS One. 2013 Oct 7;8(10):e76630. doi: 10.1371/journal.pone.0076630. eCollection 2013.


Expression of Fap amyloids in Pseudomonas aeruginosa, P. fluorescens, and P. putida results in aggregation and increased biofilm formation.

Dueholm MS, Søndergaard MT, Nilsson M, Christiansen G, Stensballe A, Overgaard MT, Givskov M, Tolker-Nielsen T, Otzen DE, Nielsen PH.

Microbiologyopen. 2013 Jun;2(3):365-82. doi: 10.1002/mbo3.81. Epub 2013 Mar 18.


Curli functional amyloid systems are phylogenetically widespread and display large diversity in operon and protein structure.

Dueholm MS, Albertsen M, Otzen D, Nielsen PH.

PLoS One. 2012;7(12):e51274. doi: 10.1371/journal.pone.0051274. Epub 2012 Dec 12.


Fibrillation of the major curli subunit CsgA under a wide range of conditions implies a robust design of aggregation.

Dueholm MS, Nielsen SB, Hein KL, Nissen P, Chapman M, Christiansen G, Nielsen PH, Otzen DE.

Biochemistry. 2011 Oct 4;50(39):8281-90. doi: 10.1021/bi200967c. Epub 2011 Sep 12.


Functional amyloid in Pseudomonas.

Dueholm MS, Petersen SV, Sønderkær M, Larsen P, Christiansen G, Hein KL, Enghild JJ, Nielsen JL, Nielsen KL, Nielsen PH, Otzen DE.

Mol Microbiol. 2010 Aug;77(4):1009-20. doi: 10.1111/j.1365-2958.2010.07269.x. Epub 2010 Jun 21.


Widespread abundance of functional bacterial amyloid in mycolata and other gram-positive bacteria.

Jordal PB, Dueholm MS, Larsen P, Petersen SV, Enghild JJ, Christiansen G, Højrup P, Nielsen PH, Otzen DE.

Appl Environ Microbiol. 2009 Jun;75(12):4101-10. doi: 10.1128/AEM.02107-08. Epub 2009 Apr 24.


Amyloid adhesins are abundant in natural biofilms.

Larsen P, Nielsen JL, Dueholm MS, Wetzel R, Otzen D, Nielsen PH.

Environ Microbiol. 2007 Dec;9(12):3077-90.


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