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Items: 1 to 50 of 209

1.

Characterization of paralogous uncx transcription factor encoding genes in zebrafish.

Nittoli V, Fortunato AE, Fasano G, Coppola U, Gentile A, Maiella S, Langellotto F, Porreca I, De Paolo R, Marino R, Fiengo M, Donizetti A, Aniello F, Kondo T, Ristoratore F, Canzoniero LMT, Duboule D, Wilson SW, Sordino P.

Gene X. 2019 Jun;2:100011. doi: 10.1016/j.gene.2019.100011.

PMID:
31193955
2.

Tail Bud Progenitor Activity Relies on a Network Comprising Gdf11, Lin28, and Hox13 Genes.

Aires R, de Lemos L, Nóvoa A, Jurberg AD, Mascrez B, Duboule D, Mallo M.

Dev Cell. 2019 Feb 11;48(3):383-395.e8. doi: 10.1016/j.devcel.2018.12.004. Epub 2019 Jan 17.

PMID:
30661984
3.

Similarities and differences in the regulation of HoxD genes during chick and mouse limb development.

Yakushiji-Kaminatsui N, Lopez-Delisle L, Bolt CC, Andrey G, Beccari L, Duboule D.

PLoS Biol. 2018 Nov 26;16(11):e3000004. doi: 10.1371/journal.pbio.3000004. eCollection 2018 Nov.

4.

Multi-axial self-organization properties of mouse embryonic stem cells into gastruloids.

Beccari L, Moris N, Girgin M, Turner DA, Baillie-Johnson P, Cossy AC, Lutolf MP, Duboule D, Arias AM.

Nature. 2018 Oct;562(7726):272-276. doi: 10.1038/s41586-018-0578-0. Epub 2018 Oct 3.

PMID:
30283134
5.

Heterogeneous combinatorial expression of Hoxd genes in single cells during limb development.

Fabre PJ, Leleu M, Mascrez B, Lo Giudice Q, Cobb J, Duboule D.

BMC Biol. 2018 Sep 18;16(1):101. doi: 10.1186/s12915-018-0570-z.

6.

Rescue of an aggressive female sexual courtship in mice by CRISPR/Cas9 secondary mutation in vivo.

Zakany J, Duboule D.

BMC Res Notes. 2018 Mar 27;11(1):193. doi: 10.1186/s13104-018-3307-8.

7.

Response to Peron et al.

Kragesteen BK, Duboule D, Mundlos S, Spielmann M.

Genet Med. 2018 Nov;20(11):1481-1482. doi: 10.1038/gim.2018.20. No abstract available.

PMID:
29493576
8.

The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes.

Rodríguez-Carballo E, Lopez-Delisle L, Zhan Y, Fabre PJ, Beccari L, El-Idrissi I, Huynh THN, Ozadam H, Dekker J, Duboule D.

Genes Dev. 2017 Nov 15;31(22):2264-2281. doi: 10.1101/gad.307769.117. Epub 2017 Dec 22.

9.

Noncoding copy-number variations are associated with congenital limb malformation.

Flöttmann R, Kragesteen BK, Geuer S, Socha M, Allou L, Sowińska-Seidler A, Bosquillon de Jarcy L, Wagner J, Jamsheer A, Oehl-Jaschkowitz B, Wittler L, de Silva D, Kurth I, Maya I, Santos-Simarro F, Hülsemann W, Klopocki E, Mountford R, Fryer A, Borck G, Horn D, Lapunzina P, Wilson M, Mascrez B, Duboule D, Mundlos S, Spielmann M.

Genet Med. 2018 Jun;20(6):599-607. doi: 10.1038/gim.2017.154. Epub 2017 Oct 12.

PMID:
29236091
10.

Control of growth and gut maturation by HoxD genes and the associated lncRNA Haglr.

Zakany J, Darbellay F, Mascrez B, Necsulea A, Duboule D.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):E9290-E9299. doi: 10.1073/pnas.1712511114. Epub 2017 Oct 17.

11.

Embryonic timing, axial stem cells, chromatin dynamics, and the Hox clock.

Deschamps J, Duboule D.

Genes Dev. 2017 Jul 15;31(14):1406-1416. doi: 10.1101/gad.303123.117. Review.

12.

Large scale genomic reorganization of topological domains at the HoxD locus.

Fabre PJ, Leleu M, Mormann BH, Lopez-Delisle L, Noordermeer D, Beccari L, Duboule D.

Genome Biol. 2017 Aug 7;18(1):149. doi: 10.1186/s13059-017-1278-z.

13.

Integration of Shh and Fgf signaling in controlling Hox gene expression in cultured limb cells.

Rodrigues AR, Yakushiji-Kaminatsui N, Atsuta Y, Andrey G, Schorderet P, Duboule D, Tabin CJ.

Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):3139-3144. doi: 10.1073/pnas.1620767114. Epub 2017 Mar 7.

14.

Hotair Is Dispensible for Mouse Development.

Amândio AR, Necsulea A, Joye E, Mascrez B, Duboule D.

PLoS Genet. 2016 Dec 15;12(12):e1006232. doi: 10.1371/journal.pgen.1006232. eCollection 2016 Dec.

15.

Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape.

Schep R, Necsulea A, Rodríguez-Carballo E, Guerreiro I, Andrey G, Nguyen Huynh TH, Marcet V, Zákány J, Duboule D, Beccari L.

Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729. Epub 2016 Nov 15.

16.

Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan.

Guerreiro I, Gitto S, Novoa A, Codourey J, Nguyen Huynh TH, Gonzalez F, Milinkovitch MC, Mallo M, Duboule D.

Elife. 2016 Aug 1;5. pii: e16087. doi: 10.7554/eLife.16087.

17.

A role for HOX13 proteins in the regulatory switch between TADs at the HoxD locus.

Beccari L, Yakushiji-Kaminatsui N, Woltering JM, Necsulea A, Lonfat N, Rodríguez-Carballo E, Mascrez B, Yamamoto S, Kuroiwa A, Duboule D.

Genes Dev. 2016 May 15;30(10):1172-86. doi: 10.1101/gad.281055.116. Epub 2016 May 19.

18.

Topological Domains, Metagenes, and the Emergence of Pleiotropic Regulations at Hox Loci.

Darbellay F, Duboule D.

Curr Top Dev Biol. 2016;116:299-314. doi: 10.1016/bs.ctdb.2015.11.022. Epub 2016 Jan 27. Review.

PMID:
26970625
19.

Visualizing the HoxD Gene Cluster at the Nanoscale Level.

Fabre PJ, Benke A, Manley S, Duboule D.

Cold Spring Harb Symp Quant Biol. 2015;80:9-16. doi: 10.1101/sqb.2015.80.027177. Epub 2016 Jan 14. Review.

PMID:
26767994
20.

Nanoscale spatial organization of the HoxD gene cluster in distinct transcriptional states.

Fabre PJ, Benke A, Joye E, Nguyen Huynh TH, Manley S, Duboule D.

Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):13964-9. doi: 10.1073/pnas.1517972112. Epub 2015 Oct 26.

21.

Tetrapod axial evolution and developmental constraints; Empirical underpinning by a mouse model.

Woltering JM, Duboule D.

Mech Dev. 2015 Nov;138 Pt 2:64-72. doi: 10.1016/j.mod.2015.07.006. Epub 2015 Jul 31.

22.

Structure, function and evolution of topologically associating domains (TADs) at HOX loci.

Lonfat N, Duboule D.

FEBS Lett. 2015 Oct 7;589(20 Pt A):2869-76. doi: 10.1016/j.febslet.2015.04.024. Epub 2015 Apr 23. Review.

23.

Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain.

Vieux-Rochas M, Fabre PJ, Leleu M, Duboule D, Noordermeer D.

Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4672-7. doi: 10.1073/pnas.1504783112. Epub 2015 Mar 30.

24.

Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci.

Lonfat N, Montavon T, Darbellay F, Gitto S, Duboule D.

Science. 2014 Nov 21;346(6212):1004-6. doi: 10.1126/science.1257493.

25.

The genetics of murine Hox loci: TAMERE, STRING, and PANTHERE to engineer chromosome variants.

Tschopp P, Duboule D.

Methods Mol Biol. 2014;1196:89-102. doi: 10.1007/978-1-4939-1242-1_6.

PMID:
25151159
26.

Considerations when investigating lncRNA function in vivo.

Bassett AR, Akhtar A, Barlow DP, Bird AP, Brockdorff N, Duboule D, Ephrussi A, Ferguson-Smith AC, Gingeras TR, Haerty W, Higgs DR, Miska EA, Ponting CP.

Elife. 2014 Aug 14;3:e03058. doi: 10.7554/eLife.03058. Review.

27.

Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs.

Lopez-Rios J, Duchesne A, Speziale D, Andrey G, Peterson KA, Germann P, Unal E, Liu J, Floriot S, Barbey S, Gallard Y, Müller-Gerbl M, Courtney AD, Klopp C, Rodriguez S, Ivanek R, Beisel C, Wicking C, Iber D, Robert B, McMahon AP, Duboule D, Zeller R.

Nature. 2014 Jul 3;511(7507):46-51. doi: 10.1038/nature13289. Epub 2014 Jun 18.

PMID:
24990743
28.

Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci.

Noordermeer D, Leleu M, Schorderet P, Joye E, Chabaud F, Duboule D.

Elife. 2014 Apr 29;3:e02557. doi: 10.7554/eLife.02557.

29.

Evolving Hox activity profiles govern diversity in locomotor systems.

Jung H, Mazzoni EO, Soshnikova N, Hanley O, Venkatesh B, Duboule D, Dasen JS.

Dev Cell. 2014 Apr 28;29(2):171-87. doi: 10.1016/j.devcel.2014.03.008. Epub 2014 Apr 17.

30.

SnapShot: Hox gene regulation.

Andrey G, Duboule D.

Cell. 2014 Feb 13;156(4):856-856.e1. doi: 10.1016/j.cell.2014.01.060. No abstract available.

31.

Conservation and divergence of regulatory strategies at Hox Loci and the origin of tetrapod digits.

Woltering JM, Noordermeer D, Leleu M, Duboule D.

PLoS Biol. 2014 Jan;12(1):e1001773. doi: 10.1371/journal.pbio.1001773. Epub 2014 Jan 21.

32.

Snakes: hatching of a model system for Evo-Devo?

Guerreiro I, Duboule D.

Int J Dev Biol. 2014;58(10-12):727-32. doi: 10.1387/ijdb.150026dd.

33.

The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system.

Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wüster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pla D, Sanz L, Hyder AS, Ribeiro JM, Arntzen JW, van den Thillart GE, Boetzer M, Pirovano W, Dirks RP, Spaink HP, Duboule D, McGlinn E, Kini RM, Richardson MK.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20651-6. doi: 10.1073/pnas.1314702110. Epub 2013 Dec 2.

34.

A genetic approach to the recruitment of PRC2 at the HoxD locus.

Schorderet P, Lonfat N, Darbellay F, Tschopp P, Gitto S, Soshnikova N, Duboule D.

PLoS Genet. 2013 Nov;9(11):e1003951. doi: 10.1371/journal.pgen.1003951. Epub 2013 Nov 7.

35.

Topology of mammalian developmental enhancers and their regulatory landscapes.

de Laat W, Duboule D.

Nature. 2013 Oct 24;502(7472):499-506. doi: 10.1038/nature12753. Review.

PMID:
24153303
36.

Multiple enhancers regulate Hoxd genes and the Hotdog LncRNA during cecum budding.

Delpretti S, Montavon T, Leleu M, Joye E, Tzika A, Milinkovitch M, Duboule D.

Cell Rep. 2013 Oct 17;5(1):137-50. doi: 10.1016/j.celrep.2013.09.002. Epub 2013 Sep 26.

37.

Chromatin looping and organization at developmentally regulated gene loci.

Noordermeer D, Duboule D.

Wiley Interdiscip Rev Dev Biol. 2013 Sep-Oct;2(5):615-30. doi: 10.1002/wdev.103. Epub 2013 Jan 3. Review.

PMID:
24014450
38.

Combined function of HoxA and HoxB clusters in neural crest cells.

Vieux-Rochas M, Mascrez B, Krumlauf R, Duboule D.

Dev Biol. 2013 Oct 1;382(1):293-301. doi: 10.1016/j.ydbio.2013.06.027. Epub 2013 Jul 11.

39.

Transgene- and locus-dependent imprinting reveals allele-specific chromosome conformations.

Lonfat N, Montavon T, Jebb D, Tschopp P, Nguyen Huynh TH, Zakany J, Duboule D.

Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):11946-51. doi: 10.1073/pnas.1310704110. Epub 2013 Jul 1.

40.

A switch between topological domains underlies HoxD genes collinearity in mouse limbs.

Andrey G, Montavon T, Mascrez B, Gonzalez F, Noordermeer D, Leleu M, Trono D, Spitz F, Duboule D.

Science. 2013 Jun 7;340(6137):1234167. doi: 10.1126/science.1234167.

41.

Role of a polymorphism in a Hox/Pax-responsive enhancer in the evolution of the vertebrate spine.

Guerreiro I, Nunes A, Woltering JM, Casaca A, Nóvoa A, Vinagre T, Hunter ME, Duboule D, Mallo M.

Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):10682-6. doi: 10.1073/pnas.1300592110. Epub 2013 May 14.

42.

Chromatin organization and global regulation of Hox gene clusters.

Montavon T, Duboule D.

Philos Trans R Soc Lond B Biol Sci. 2013 May 6;368(1620):20120367. doi: 10.1098/rstb.2012.0367. Print 2013. Review.

43.

Chromatin architectures and Hox gene collinearity.

Noordermeer D, Duboule D.

Curr Top Dev Biol. 2013;104:113-48. doi: 10.1016/B978-0-12-416027-9.00004-8. Review.

PMID:
23587240
44.

Duplications of hox gene clusters and the emergence of vertebrates.

Soshnikova N, Dewaele R, Janvier P, Krumlauf R, Duboule D.

Dev Biol. 2013 Jun 15;378(2):194-9. doi: 10.1016/j.ydbio.2013.03.004. Epub 2013 Mar 15.

45.

Impact of copy number variations (CNVs) on long-range gene regulation at the HoxD locus.

Montavon T, Thevenet L, Duboule D.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20204-11. doi: 10.1073/pnas.1217659109. Epub 2012 Nov 7.

46.

A genetic basis for altered sexual behavior in mutant female mice.

Zakany J, Duboule D.

Curr Biol. 2012 Sep 25;22(18):1676-80. doi: 10.1016/j.cub.2012.06.067. Epub 2012 Aug 2.

47.

Landscapes and archipelagos: spatial organization of gene regulation in vertebrates.

Montavon T, Duboule D.

Trends Cell Biol. 2012 Jul;22(7):347-54. doi: 10.1016/j.tcb.2012.04.003. Epub 2012 May 2. Review.

PMID:
22560708
48.

A function for all posterior Hoxd genes during digit development?

Delpretti S, Zakany J, Duboule D.

Dev Dyn. 2012 Apr;241(4):792-802. doi: 10.1002/dvdy.23756. Epub 2012 Feb 28.

49.

Bimodal control of Hoxd gene transcription in the spinal cord defines two regulatory subclusters.

Tschopp P, Christen AJ, Duboule D.

Development. 2012 Mar;139(5):929-39. doi: 10.1242/dev.076794. Epub 2012 Jan 25.

50.

A regulatory archipelago controls Hox genes transcription in digits.

Montavon T, Soshnikova N, Mascrez B, Joye E, Thevenet L, Splinter E, de Laat W, Spitz F, Duboule D.

Cell. 2011 Nov 23;147(5):1132-45. doi: 10.1016/j.cell.2011.10.023.

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