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Items: 16

1.

Reply to Delmont and Eren: Strain variants and population structure during the Deepwater Horizon oil spill.

Probst AJ, Hu P, Sun CL, Dubinsky EA, Sieber CMK, Banfield JF, Andersen GL.

Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):E8950-E8952. doi: 10.1073/pnas.1712466114. Epub 2017 Oct 10. No abstract available.

2.

Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders.

Hu P, Dubinsky EA, Probst AJ, Wang J, Sieber CMK, Tom LM, Gardinali PR, Banfield JF, Atlas RM, Andersen GL.

Proc Natl Acad Sci U S A. 2017 Jul 11;114(28):7432-7437. doi: 10.1073/pnas.1703424114. Epub 2017 Jun 26.

3.

Bacterial community structure transformed after thermophilically composting human waste in Haiti.

Piceno YM, Pecora-Black G, Kramer S, Roy M, Reid FC, Dubinsky EA, Andersen GL.

PLoS One. 2017 Jun 1;12(6):e0177626. doi: 10.1371/journal.pone.0177626. eCollection 2017.

4.

Microbial source tracking in impaired watersheds using PhyloChip and machine-learning classification.

Dubinsky EA, Butkus SR, Andersen GL.

Water Res. 2016 Nov 15;105:56-64. doi: 10.1016/j.watres.2016.08.035. Epub 2016 Aug 23.

PMID:
27598696
5.

Biodegradation of dispersed Macondo crude oil by indigenous Gulf of Mexico microbial communities.

Wang J, Sandoval K, Ding Y, Stoeckel D, Minard-Smith A, Andersen G, Dubinsky EA, Atlas R, Gardinali P.

Sci Total Environ. 2016 Jul 1;557-558:453-68. doi: 10.1016/j.scitotenv.2016.03.015. Epub 2016 Mar 24.

PMID:
27017076
6.

Natural bacterial communities serve as quantitative geochemical biosensors.

Smith MB, Rocha AM, Smillie CS, Olesen SW, Paradis C, Wu L, Campbell JH, Fortney JL, Mehlhorn TL, Lowe KA, Earles JE, Phillips J, Techtmann SM, Joyner DC, Elias DA, Bailey KL, Hurt RA Jr, Preheim SP, Sanders MC, Yang J, Mueller MA, Brooks S, Watson DB, Zhang P, He Z, Dubinsky EA, Adams PD, Arkin AP, Fields MW, Zhou J, Alm EJ, Hazen TC.

MBio. 2015 May 12;6(3):e00326-15. doi: 10.1128/mBio.00326-15.

7.

Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico.

Dubinsky EA, Conrad ME, Chakraborty R, Bill M, Borglin SE, Hollibaugh JT, Mason OU, M Piceno Y, Reid FC, Stringfellow WT, Tom LM, Hazen TC, Andersen GL.

Environ Sci Technol. 2013 Oct 1;47(19):10860-7. doi: 10.1021/es401676y. Epub 2013 Sep 19.

PMID:
23937111
8.

Recommendations following a multi-laboratory comparison of microbial source tracking methods.

Stewart JR, Boehm AB, Dubinsky EA, Fong TT, Goodwin KD, Griffith JF, Noble RT, Shanks OC, Vijayavel K, Weisberg SB.

Water Res. 2013 Nov 15;47(18):6829-38. doi: 10.1016/j.watres.2013.04.063. Epub 2013 Jul 10.

PMID:
23891204
9.

Evaluation of molecular community analysis methods for discerning fecal sources and human waste.

Cao Y, Van De Werfhorst LC, Dubinsky EA, Badgley BD, Sadowsky MJ, Andersen GL, Griffith JF, Holden PA.

Water Res. 2013 Nov 15;47(18):6862-72. doi: 10.1016/j.watres.2013.02.061. Epub 2013 Jul 5.

PMID:
23880215
10.

Microbial Response to the MC-252 Oil and Corexit 9500 in the Gulf of Mexico.

Chakraborty R, Borglin SE, Dubinsky EA, Andersen GL, Hazen TC.

Front Microbiol. 2012 Oct 11;3:357. doi: 10.3389/fmicb.2012.00357. eCollection 2012.

11.

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill.

Mason OU, Hazen TC, Borglin S, Chain PS, Dubinsky EA, Fortney JL, Han J, Holman HY, Hultman J, Lamendella R, Mackelprang R, Malfatti S, Tom LM, Tringe SG, Woyke T, Zhou J, Rubin EM, Jansson JK.

ISME J. 2012 Sep;6(9):1715-27. doi: 10.1038/ismej.2012.59. Epub 2012 Jun 21.

12.

Intestinal microbiota as novel biomarkers of prior radiation exposure.

Lam V, Moulder JE, Salzman NH, Dubinsky EA, Andersen GL, Baker JE.

Radiat Res. 2012 May;177(5):573-83. Epub 2012 Mar 23.

PMID:
22439602
13.

Application of phylogenetic microarray analysis to discriminate sources of fecal pollution.

Dubinsky EA, Esmaili L, Hulls JR, Cao Y, Griffith JF, Andersen GL.

Environ Sci Technol. 2012 Apr 17;46(8):4340-7. doi: 10.1021/es2040366. Epub 2012 Apr 4.

PMID:
22360280
14.

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume.

Lu Z, Deng Y, Van Nostrand JD, He Z, Voordeckers J, Zhou A, Lee YJ, Mason OU, Dubinsky EA, Chavarria KL, Tom LM, Fortney JL, Lamendella R, Jansson JK, D'haeseleer P, Hazen TC, Zhou J.

ISME J. 2012 Feb;6(2):451-60. doi: 10.1038/ismej.2011.91. Epub 2011 Aug 4.

15.

Tropical forest soil microbial communities couple iron and carbon biogeochemistry.

Dubinsky EA, Silver WL, Firestone MK.

Ecology. 2010 Sep;91(9):2604-12.

PMID:
20957955
16.

Deep-sea oil plume enriches indigenous oil-degrading bacteria.

Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL, Alusi TR, Lamendella R, Joyner DC, Spier C, Baelum J, Auer M, Zemla ML, Chakraborty R, Sonnenthal EL, D'haeseleer P, Holman HY, Osman S, Lu Z, Van Nostrand JD, Deng Y, Zhou J, Mason OU.

Science. 2010 Oct 8;330(6001):204-8. doi: 10.1126/science.1195979. Epub 2010 Aug 24.

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