Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 169

1.

BioJava 5: A community driven open-source bioinformatics library.

Lafita A, Bliven S, Prlić A, Guzenko D, Rose PW, Bradley A, Pavan P, Myers-Turnbull D, Valasatava Y, Heuer M, Larson M, Burley SK, Duarte JM.

PLoS Comput Biol. 2019 Feb 8;15(2):e1006791. doi: 10.1371/journal.pcbi.1006791. eCollection 2019 Feb.

2.

An Acoustic Examination of Pitch Variation in Soprano Singing.

de Souza GVS, Duarte JMT, Viegas F, Simões-Zenari M, Nemr K.

J Voice. 2019 Feb 2. pii: S0892-1997(18)30416-8. doi: 10.1016/j.jvoice.2018.12.007. [Epub ahead of print]

PMID:
30717888
3.

Impact of Caffeine Consumption on Type 2 Diabetes-Induced Spatial Memory Impairment and Neurochemical Alterations in the Hippocampus.

Duarte JMN, Skoug C, Silva HB, Carvalho RA, Gruetter R, Cunha RA.

Front Neurosci. 2019 Jan 9;12:1015. doi: 10.3389/fnins.2018.01015. eCollection 2018.

4.

Neurochemical Modifications in the Hippocampus, Cortex and Hypothalamus of Mice Exposed to Long-Term High-Fat Diet.

Lizarbe B, Soares AF, Larsson S, Duarte JMN.

Front Neurosci. 2019 Jan 8;12:985. doi: 10.3389/fnins.2018.00985. eCollection 2018.

5.

A JAK1 Selective Kinase Inhibitor and Tofacitinib Affect Macrophage Activation and Function.

De Vries LCS, Duarte JM, De Krijger M, Welting O, Van Hamersveld PHP, Van Leeuwen-Hilbers FWM, Moerland PD, Jongejan A, D'Haens GR, De Jonge WJ, Wildenberg ME.

Inflamm Bowel Dis. 2019 Mar 14;25(4):647-660. doi: 10.1093/ibd/izy364.

PMID:
30668755
6.

Use of Selenium-enriched olive leaves in the feed of growing rabbits: Effect on oxidative status, mineral profile and Selenium speciation of Longissimus dorsi meat.

Mattioli S, Dal Bosco A, Duarte JMM, D'Amato R, Castellini C, Beone GM, Fontanella MC, Beghelli D, Regni L, Businelli D, Trabalza-Marinucci M, Proietti P.

J Trace Elem Med Biol. 2019 Jan;51:98-105. doi: 10.1016/j.jtemb.2018.10.004. Epub 2018 Oct 6.

PMID:
30466946
7.

Region-specific control of microglia by adenosine A2A receptors: uncoupling anxiety and associated cognitive deficits in female rats.

Duarte JM, Gaspar R, Caetano L, Patrício P, Soares-Cunha C, Mateus-Pinheiro A, Alves ND, Santos AR, Ferreira SG, Sardinha V, Oliveira JF, Fontes-Ribeiro C, Sousa N, Cunha RA, Ambrósio AF, Pinto L, Rodrigues AJ, Gomes CA.

Glia. 2019 Jan;67(1):182-192. doi: 10.1002/glia.23476. Epub 2018 Nov 21.

PMID:
30461068
8.

Health communication by virtual environments: an experience report.

Libardi MBO, Duarte JMO, Lima JAF, Monteiro SNC, Vaz TS, Torri Z.

Rev Gaucha Enferm. 2018 Oct 22;39:e20170229. doi: 10.1590/1983-1447.2018.20170229. English, Portuguese.

9.

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy.

Burley SK, Berman HM, Bhikadiya C, Bi C, Chen L, Di Costanzo L, Christie C, Dalenberg K, Duarte JM, Dutta S, Feng Z, Ghosh S, Goodsell DS, Green RK, Guranovic V, Guzenko D, Hudson BP, Kalro T, Liang Y, Lowe R, Namkoong H, Peisach E, Periskova I, Prlic A, Randle C, Rose A, Rose P, Sala R, Sekharan M, Shao C, Tan L, Tao YP, Valasatava Y, Voigt M, Westbrook J, Woo J, Yang H, Young J, Zhuravleva M, Zardecki C.

Nucleic Acids Res. 2019 Jan 8;47(D1):D464-D474. doi: 10.1093/nar/gky1004.

10.

High-fat diet consumption alters energy metabolism in the mouse hypothalamus.

Lizarbe B, Cherix A, Duarte JMN, Cardinaux JR, Gruetter R.

Int J Obes (Lond). 2018 Oct 9. doi: 10.1038/s41366-018-0224-9. [Epub ahead of print]

PMID:
30301962
11.

[Eagle syndrome: elongation of the styloid apophysis].

Zanfardini A, Duarte JM.

Medicina (B Aires). 2018;78(5):381. Spanish. No abstract available.

12.

Synthetic circuits reveal how mechanisms of gene regulatory networks constrain evolution.

Schaerli Y, Jiménez A, Duarte JM, Mihajlovic L, Renggli J, Isalan M, Sharpe J, Wagner A.

Mol Syst Biol. 2018 Sep 10;14(9):e8102. doi: 10.15252/msb.20178102.

13.

[Chronic inflammatory demyelinating polyneuropathy in a diabetic patient with syphilis].

Duarte JM, Rodríguez Cairoli F, Saguier Padilla I, Ramos SG, Barcia RE, Arévalo CE.

Medicina (B Aires). 2018;78(4):286-289. Spanish.

14.

Investigation of protein quaternary structure via stoichiometry and symmetry information.

Korkmaz S, Duarte JM, Prlić A, Goksuluk D, Zararsiz G, Saracbasi O, Burley SK, Rose PW.

PLoS One. 2018 Jun 4;13(6):e0197176. doi: 10.1371/journal.pone.0197176. eCollection 2018. Erratum in: PLoS One. 2018 Jul 27;13(7):e0201403.

15.

NGL viewer: web-based molecular graphics for large complexes.

Rose AS, Bradley AR, Valasatava Y, Duarte JM, Prlic A, Rose PW.

Bioinformatics. 2018 Nov 1;34(21):3755-3758. doi: 10.1093/bioinformatics/bty419.

PMID:
29850778
16.

Automated evaluation of quaternary structures from protein crystals.

Bliven S, Lafita A, Parker A, Capitani G, Duarte JM.

PLoS Comput Biol. 2018 Apr 30;14(4):e1006104. doi: 10.1371/journal.pcbi.1006104. eCollection 2018 Apr.

17.

[Association between diabetic ketoacidosis and acromegaly].

Ocampo P, Duarte JM, Barcia R, Arévalo C.

Medicina (B Aires). 2018;78(2):131-133. Spanish.

18.

Intrapopulation Chromosomal Polymorphism in Mazama gouazoubira (Cetartiodactyla; Cervidae): The Emergence of a New Species?

Valeri MP, Tomazella IM, Duarte JMB.

Cytogenet Genome Res. 2018;154(3):147-152. doi: 10.1159/000488377. Epub 2018 Apr 14.

PMID:
29656282
19.

Magnetic Resonance Spectroscopy in Schizophrenia: Evidence for Glutamatergic Dysfunction and Impaired Energy Metabolism.

Duarte JMN, Xin L.

Neurochem Res. 2019 Jan;44(1):102-116. doi: 10.1007/s11064-018-2521-z. Epub 2018 Apr 3. Review.

20.

Urofecal steroid profiles of captive Blue-fronted parrots (Amazona aestiva) with different reproductive outcomes.

Pereira RJG, Christofoletti MD, Blank MH, Duarte JMB.

Gen Comp Endocrinol. 2018 May 1;260:1-8. doi: 10.1016/j.ygcen.2018.02.006. Epub 2018 Feb 7.

PMID:
29427631
21.

Feasibility of in vivo measurement of glucose metabolism in the mouse hypothalamus by 1 H-[13 C] MRS at 14.1T.

Lizarbe B, Lei H, Duarte JMN, Lanz B, Cherix A, Gruetter R.

Magn Reson Med. 2018 Sep;80(3):874-884. doi: 10.1002/mrm.27129. Epub 2018 Feb 9.

PMID:
29427382
22.

ATLANTIC MAMMAL TRAITS: a data set of morphological traits of mammals in the Atlantic Forest of South America.

Gonçalves F, Bovendorp RS, Beca G, Bello C, Costa-Pereira R, Muylaert RL, Rodarte RR, Villar N, Souza R, Graipel ME, Cherem JJ, Faria D, Baumgarten J, Alvarez MR, Vieira EM, Cáceres N, Pardini R, Leite YLR, Costa LP, Mello MAR, Fischer E, Passos FC, Varzinczak LH, Prevedello JA, Cruz-Neto AP, Carvalho F, Percequillo AR, Paviolo A, Nava A, Duarte JMB, de la Sancha NU, Bernard E, Morato RG, Ribeiro JF, Becker RG, Paise G, Tomasi PS, Vélez-Garcia F, Melo GL, Sponchiado J, Cerezer F, Barros MAS, de Souza AQS, Dos Santos CC, Giné GAF, Kerches-Rogeri P, Weber MM, Ambar G, Cabrera-Martinez LV, Eriksson A, Silveira M, Santos CF, Alves L, Barbier E, Rezende GC, Garbino GST, Rios ÉO, Silva A, Nascimento ATA, de Carvalho RS, Feijó A, Arrabal J, Agostini I, Lamattina D, Costa S, Vanderhoeven E, de Melo FR, de Oliveira Laroque P, Jerusalinsky L, Valença-Montenegro MM, Martins AB, Ludwig G, de Azevedo RB, Anzóategui A, da Silva MX, Figuerêdo Duarte Moraes M, Vogliotti A, Gatti A, Püttker T, Barros CS, Martins TK, Keuroghlian A, Eaton DP, Neves CL, Nardi MS, Braga C, Gonçalves PR, Srbek-Araujo AC, Mendes P, de Oliveira JA, Soares FAM, Rocha PA, Crawshaw P Jr, Ribeiro MC, Galetti M.

Ecology. 2018 Feb;99(2):498. doi: 10.1002/ecy.2106.

PMID:
29399824
23.

Monitoring ovarian cycles, pregnancy and post-partum in captive marsh deer (Blastocerus dichotomus) by measuring fecal steroids.

Polegato BF, Zanetti EDS, Duarte JMB.

Conserv Physiol. 2018 Jan 25;6(1):cox073. doi: 10.1093/conphys/cox073. eCollection 2018.

24.

Progressively Enlarging Cerebellar Hematoma Concurrent with T-DM1 Treatment.

Vilela MD, Longstreth WT Jr, Pedrosa HAS, Gil GOB, Duarte JM, Filho MAD.

World Neurosurg. 2018 Mar;111:109-114. doi: 10.1016/j.wneu.2017.12.072. Epub 2017 Dec 20.

PMID:
29274446
25.

Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.

Glusman G, Rose PW, Prlić A, Dougherty J, Duarte JM, Hoffman AS, Barton GJ, Bendixen E, Bergquist T, Bock C, Brunk E, Buljan M, Burley SK, Cai B, Carter H, Gao J, Godzik A, Heuer M, Hicks M, Hrabe T, Karchin R, Leman JK, Lane L, Masica DL, Mooney SD, Moult J, Omenn GS, Pearl F, Pejaver V, Reynolds SM, Rokem A, Schwede T, Song S, Tilgner H, Valasatava Y, Zhang Y, Deutsch EW.

Genome Med. 2017 Dec 18;9(1):113. doi: 10.1186/s13073-017-0509-y. Review.

26.

Astrocytic and neuronal oxidative metabolism are coupled to the rate of glutamate-glutamine cycle in the tree shrew visual cortex.

Sonnay S, Poirot J, Just N, Clerc AC, Gruetter R, Rainer G, Duarte JMN.

Glia. 2018 Mar;66(3):477-491. doi: 10.1002/glia.23259. Epub 2017 Nov 9.

PMID:
29120073
27.

Assessment of protein assembly prediction in CASP12.

Lafita A, Bliven S, Kryshtafovych A, Bertoni M, Monastyrskyy B, Duarte JM, Schwede T, Capitani G.

Proteins. 2018 Mar;86 Suppl 1:247-256. doi: 10.1002/prot.25408. Epub 2017 Nov 8.

28.

RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education.

Burley SK, Berman HM, Christie C, Duarte JM, Feng Z, Westbrook J, Young J, Zardecki C.

Protein Sci. 2018 Jan;27(1):316-330. doi: 10.1002/pro.3331. Epub 2017 Nov 11. Review.

29.

Increased hepatic fatty acid polyunsaturation precedes ectopic lipid deposition in the liver in adaptation to high-fat diets in mice.

Soares AF, Duarte JMN, Gruetter R.

MAGMA. 2018 Apr;31(2):341-354. doi: 10.1007/s10334-017-0654-8. Epub 2017 Oct 12.

PMID:
29027041
30.

Genetic diversity of the pampas deer (Ozotoceros bezoarticus) population in the Brazilian Pantanal assessed by combining fresh fecal DNA analysis and a set of heterologous microsatellite loci.

Mantellatto AMB, Caparroz R, Christofoletti MD, Piovezan U, Duarte JMB.

Genet Mol Biol. 2017 Oct-Dec;40(4):774-780. doi: 10.1590/1678-4685-GMB-2016-0323. Epub 2017 Oct 2.

31.

Alterations of Brain Energy Metabolism in Type 2 Diabetic Goto-Kakizaki Rats Measured In Vivo by 13C Magnetic Resonance Spectroscopy.

Girault FM, Sonnay S, Gruetter R, Duarte JMN.

Neurotox Res. 2017 Oct 2. doi: 10.1007/s12640-017-9821-y. [Epub ahead of print]

PMID:
28971314
32.

The Effects of Cryopreservation on Different Passages of Fibroblast Cell Culture in Brown Brocket Deer (Mazama gouazoubira).

Magalhães LC, Bhat MH, Freitas JLS, Melo LM, Teixeira DIA, Pinto LCA, Câmara LMC, Duarte JMB, Freitas VJF.

Biopreserv Biobank. 2017 Oct;15(5):463-468. doi: 10.1089/bio.2017.0060. Epub 2017 Sep 18.

PMID:
28922611
33.

Bacterial Microcolonies in Gel Beads for High-Throughput Screening of Libraries in Synthetic Biology.

Duarte JM, Barbier I, Schaerli Y.

ACS Synth Biol. 2017 Nov 17;6(11):1988-1995. doi: 10.1021/acssynbio.7b00111. Epub 2017 Aug 21.

PMID:
28803463
34.

Social isolation stress and chronic glutathione deficiency have a common effect on the glutamine-to-glutamate ratio and myo-inositol concentration in the mouse frontal cortex.

Corcoba A, Gruetter R, Do KQ, Duarte JMN.

J Neurochem. 2017 Sep;142(5):767-775. doi: 10.1111/jnc.14116. Epub 2017 Jul 28.

35.

How Energy Metabolism Supports Cerebral Function: Insights from 13C Magnetic Resonance Studies In vivo.

Sonnay S, Gruetter R, Duarte JMN.

Front Neurosci. 2017 May 26;11:288. doi: 10.3389/fnins.2017.00288. eCollection 2017. Review.

36.

Identifying Mazama gouazoubira (Artiodactyla; Cervidae) chromosomes involved in rearrangements induced by doxorubicin.

Tomazella IM, Abril VV, Duarte JMB.

Genet Mol Biol. 2017 Apr-Jun;40(2):460-467. doi: 10.1590/1678-4685-GMB-2016-0275. Epub 2017 Jun 5.

37.

MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures.

Bradley AR, Rose AS, Pavelka A, Valasatava Y, Duarte JM, Prlić A, Rose PW.

PLoS Comput Biol. 2017 Jun 2;13(6):e1005575. doi: 10.1371/journal.pcbi.1005575. eCollection 2017 Jun.

38.

Intraspecific chromosome polymorphisms can lead to reproductive isolation and speciation: an example in red brocket deer (Mazama americana).

Salviano MB, Cursino MS, Zanetti EDS, Abril VV, Duarte JMB.

Biol Reprod. 2017 Jun 1;96(6):1279-1287. doi: 10.1093/biolre/iox041.

PMID:
28486644
39.

Commentary.

Duarte JM.

J Neurosci Rural Pract. 2017 Apr-Jun;8(2):299-300. doi: 10.4103/jnrp.jnrp_35_17. No abstract available.

40.

Towards an efficient compression of 3D coordinates of macromolecular structures.

Valasatava Y, Bradley AR, Rose AS, Duarte JM, Prlić A, Rose PW.

PLoS One. 2017 Mar 31;12(3):e0174846. doi: 10.1371/journal.pone.0174846. eCollection 2017.

41.

The Dyslexia-susceptibility Protein KIAA0319 Inhibits Axon Growth Through Smad2 Signaling.

Franquinho F, Nogueira-Rodrigues J, Duarte JM, Esteves SS, Carter-Su C, Monaco AP, Molnár Z, Velayos-Baeza A, Brites P, Sousa MM.

Cereb Cortex. 2017 Mar 1;27(3):1732-1747. doi: 10.1093/cercor/bhx023.

42.

Energy metabolism in the rat cortex under thiopental anaesthesia measured In Vivo by 13 C MRS.

Sonnay S, Duarte JMN, Just N, Gruetter R.

J Neurosci Res. 2017 Nov;95(11):2297-2306. doi: 10.1002/jnr.24032. Epub 2017 Mar 19.

PMID:
28316083
43.

Are Brazilian cervids at risk of prion diseases?

Falcão CB, Lima IL, Duarte JM, de Oliveira JR, Torres RA, Wanderley AM, Gomes da Cunha JE, Garcia JE.

Prion. 2017 Jan 2;11(1):65-70. doi: 10.1080/19336896.2016.1274000. Epub 2017 Feb 8. Erratum in: Prion. 2017 Nov 2;11(6):471.

44.

Lactate and glutamate dynamics during prolonged stimulation of the rat barrel cortex suggest adaptation of cerebral glucose and oxygen metabolism.

Sonnay S, Duarte JMN, Just N.

Neuroscience. 2017 Mar 27;346:337-348. doi: 10.1016/j.neuroscience.2017.01.034. Epub 2017 Jan 30.

PMID:
28153690
45.

Glycogen Supercompensation in the Rat Brain After Acute Hypoglycemia is Independent of Glucose Levels During Recovery.

Duarte JMN, Morgenthaler FD, Gruetter R.

Neurochem Res. 2017 Jun;42(6):1629-1635. doi: 10.1007/s11064-017-2178-z. Epub 2017 Jan 12.

PMID:
28083850
46.

Using sperm morphometry and multivariate analysis to differentiate species of gray Mazama.

Cursino MS, Duarte JM.

R Soc Open Sci. 2016 Nov 9;3(11):160345. doi: 10.1098/rsos.160345. eCollection 2016 Nov.

47.

The RCSB protein data bank: integrative view of protein, gene and 3D structural information.

Rose PW, Prlić A, Altunkaya A, Bi C, Bradley AR, Christie CH, Costanzo LD, Duarte JM, Dutta S, Feng Z, Green RK, Goodsell DS, Hudson B, Kalro T, Lowe R, Peisach E, Randle C, Rose AS, Shao C, Tao YP, Valasatava Y, Voigt M, Westbrook JD, Woo J, Yang H, Young JY, Zardecki C, Berman HM, Burley SK.

Nucleic Acids Res. 2017 Jan 4;45(D1):D271-D281. doi: 10.1093/nar/gkw1000. Epub 2016 Oct 27.

48.

Brain metabolic alterations in mice subjected to postnatal traumatic stress and in their offspring.

Gapp K, Corcoba A, van Steenwyk G, Mansuy IM, Duarte JM.

J Cereb Blood Flow Metab. 2017 Jul;37(7):2423-2432. doi: 10.1177/0271678X16667525. Epub 2016 Jan 1.

49.

[The impairment of A-delta fibers in median nerve compression at the wrist, using the cutaneous silent period].

Duarte JM, D'Onofrio HM, Rolón JI, Bertotti AC.

Medicina (B Aires). 2016;76(4):219-22. Spanish.

50.

Ovarian cycle of southern brown howler monkey (Alouatta guariba clamitans) through fecal progestin measurement.

Silvestre T, Zanetti ES, Duarte JMB, Barriento FG, Hirano ZMB, Souza JC Jr, Passos FC.

Primates. 2017 Jan;58(1):131-139. doi: 10.1007/s10329-016-0561-z. Epub 2016 Aug 19.

PMID:
27541307

Supplemental Content

Loading ...
Support Center