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Items: 1 to 50 of 83

1.

Structural Diversity and Bioactivities of Peptaibol Compounds From the Longibrachiatum Clade of the Filamentous Fungal Genus Trichoderma.

Marik T, Tyagi C, Balázs D, Urbán P, Szepesi Á, Bakacsy L, Endre G, Rakk D, Szekeres A, Andersson MA, Salonen H, Druzhinina IS, Vágvölgyi C, Kredics L.

Front Microbiol. 2019 Jun 26;10:1434. doi: 10.3389/fmicb.2019.01434. eCollection 2019.

2.

Evolution and comparative genomics of the most common Trichoderma species.

Kubicek CP, Steindorff AS, Chenthamara K, Manganiello G, Henrissat B, Zhang J, Cai F, Kopchinskiy AG, Kubicek EM, Kuo A, Baroncelli R, Sarrocco S, Noronha EF, Vannacci G, Shen Q, Grigoriev IV, Druzhinina IS.

BMC Genomics. 2019 Jun 12;20(1):485. doi: 10.1186/s12864-019-5680-7.

3.

Guttation capsules containing hydrogen peroxide: an evolutionarily conserved NADPH oxidase gains a role in wars between related fungi.

Zhang J, Miao Y, Rahimi MJ, Zhu H, Steindorff A, Schiessler S, Cai F, Pang G, Chenthamara K, Xu Y, Kubicek CP, Shen Q, Druzhinina IS.

Environ Microbiol. 2019 Aug;21(8):2644-2658. doi: 10.1111/1462-2920.14575. Epub 2019 Apr 22.

PMID:
30815928
4.

Isolation of Mandibular Gland Reservoir Contents from Bornean 'Exploding Ants' (Formicidae) for Volatilome Analysis by GC-MS and MetaboliteDetector.

Hoenigsberger M, Kopchinskiy AG, Parich A, Hiller K, Laciny A, Zettel H, Lim LBL, Salim KA, Druzhinina IS, Schuhmacher R.

J Vis Exp. 2018 Aug 26;(138). doi: 10.3791/57652.

5.

Hyporientalin A, an anti-Candida peptaibol from a marine Trichoderma orientale.

Touati I, Ruiz N, Thomas O, Druzhinina IS, Atanasova L, Tabbene O, Elkahoui S, Benzekri R, Bouslama L, Pouchus YF, Limam F.

World J Microbiol Biotechnol. 2018 Jun 19;34(7):98. doi: 10.1007/s11274-018-2482-z.

PMID:
29922855
6.

The diversity of Trichoderma species from soil in South Africa, with five new additions.

du Plessis IL, Druzhinina IS, Atanasova L, Yarden O, Jacobs K.

Mycologia. 2018 May-Jun;110(3):559-583. doi: 10.1080/00275514.2018.1463059. Epub 2018 Jun 14.

PMID:
29902390
7.

Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships.

Chadha S, Mehetre ST, Bansal R, Kuo A, Aerts A, Grigoriev IV, Druzhinina IS, Mukherjee PK.

Fungal Biol Biotechnol. 2018 Jun 4;5:12. doi: 10.1186/s40694-018-0056-3. eCollection 2018.

8.

Colobopsis explodens sp. n., model species for studies on "exploding ants" (Hymenoptera, Formicidae), with biological notes and first illustrations of males of the Colobopsis cylindrica group.

Laciny A, Zettel H, Kopchinskiy A, Pretzer C, Pal A, Salim KA, Rahimi MJ, Hoenigsberger M, Lim L, Jaitrong W, Druzhinina IS.

Zookeys. 2018 Apr 19;(751):1-40. doi: 10.3897/zookeys.751.22661. eCollection 2018.

9.

Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts.

Druzhinina IS, Chenthamara K, Zhang J, Atanasova L, Yang D, Miao Y, Rahimi MJ, Grujic M, Cai F, Pourmehdi S, Salim KA, Pretzer C, Kopchinskiy AG, Henrissat B, Kuo A, Hundley H, Wang M, Aerts A, Salamov A, Lipzen A, LaButti K, Barry K, Grigoriev IV, Shen Q, Kubicek CP.

PLoS Genet. 2018 Apr 9;14(4):e1007322. doi: 10.1371/journal.pgen.1007322. eCollection 2018 Apr.

10.

COMPARATIVE PHYSIOCHEMICAL ANALYSIS OF HYDROPHOBINS PRODUCED IN ESCHERICHIA COLI AND PICHIA PASTORIS.

Przylucka A, Akcapinar GB, Bonazza K, Mello-de-Sousa TM, Mach-Aigner AR, Lobanov V, Grothe H, Kubicek CP, Reimhult E, Druzhinina IS.

Colloids Surf B Biointerfaces. 2017 Nov 1;159:913-923. doi: 10.1016/j.colsurfb.2017.08.058. Epub 2017 Sep 4.

11.

Genetic engineering of Trichoderma reesei cellulases and their production.

Druzhinina IS, Kubicek CP.

Microb Biotechnol. 2017 Nov;10(6):1485-1499. doi: 10.1111/1751-7915.12726. Epub 2017 May 29. Review.

12.

Diversity Profile and Dynamics of Peptaibols Produced by Green Mould Trichoderma Species in Interactions with Their Hosts Agaricus bisporus and Pleurotus ostreatus.

Marik T, Urbán P, Tyagi C, Szekeres A, Leitgeb B, Vágvölgyi M, Manczinger L, Druzhinina IS, Vágvölgyi C, Kredics L.

Chem Biodivers. 2017 Jun;14(6). doi: 10.1002/cbdv.201700033. Epub 2017 May 10.

PMID:
28261948
13.

HFB7 - A novel orphan hydrophobin of the Harzianum and Virens clades of Trichoderma, is involved in response to biotic and abiotic stresses.

Przylucka A, Akcapinar GB, Chenthamara K, Cai F, Grujic M, Karpenko J, Livoi M, Shen Q, Kubicek CP, Druzhinina IS.

Fungal Genet Biol. 2017 May;102:63-76. doi: 10.1016/j.fgb.2017.01.002. Epub 2017 Jan 13.

14.

Comparative Genomic Analysis of Bacillus amyloliquefaciens and Bacillus subtilis Reveals Evolutional Traits for Adaptation to Plant-Associated Habitats.

Zhang N, Yang D, Kendall JR, Borriss R, Druzhinina IS, Kubicek CP, Shen Q, Zhang R.

Front Microbiol. 2016 Dec 20;7:2039. doi: 10.3389/fmicb.2016.02039. eCollection 2016.

15.

Several steps of lateral gene transfer followed by events of 'birth-and-death' evolution shaped a fungal sorbicillinoid biosynthetic gene cluster.

Druzhinina IS, Kubicek EM, Kubicek CP.

BMC Evol Biol. 2016 Dec 7;16(1):269. doi: 10.1186/s12862-016-0834-6.

16.

Two degradation strategies for overcoming the recalcitrance of natural lignocellulosic xylan by polysaccharides-binding GH10 and GH11 xylanases of filamentous fungi.

Miao Y, Li P, Li G, Liu D, Druzhinina IS, Kubicek CP, Shen Q, Zhang R.

Environ Microbiol. 2017 Mar;19(3):1054-1064. doi: 10.1111/1462-2920.13614. Epub 2017 Feb 6.

PMID:
27878934
17.

High genetic diversity of Vibrio cholerae in the European lake Neusiedler See is associated with intensive recombination in the reed habitat and the long-distance transfer of strains.

Pretzer C, Druzhinina IS, Amaro C, Benediktsdóttir E, Hedenström I, Hervio-Heath D, Huhulescu S, Schets FM, Farnleitner AH, Kirschner AK.

Environ Microbiol. 2017 Jan;19(1):328-344. doi: 10.1111/1462-2920.13612. Epub 2017 Jan 18.

18.

Microbially Mediated Plant Salt Tolerance and Microbiome-based Solutions for Saline Agriculture.

Qin Y, Druzhinina IS, Pan X, Yuan Z.

Biotechnol Adv. 2016 Nov 15;34(7):1245-1259. doi: 10.1016/j.biotechadv.2016.08.005. Epub 2016 Aug 30. Review.

PMID:
27587331
19.

Specialized Microbiome of a Halophyte and its Role in Helping Non-Host Plants to Withstand Salinity.

Yuan Z, Druzhinina IS, Labbé J, Redman R, Qin Y, Rodriguez R, Zhang C, Tuskan GA, Lin F.

Sci Rep. 2016 Aug 30;6:32467. doi: 10.1038/srep32467.

20.

Familiar Stranger: Ecological Genomics of the Model Saprotroph and Industrial Enzyme Producer Trichoderma reesei Breaks the Stereotypes.

Druzhinina IS, Kubicek CP.

Adv Appl Microbiol. 2016;95:69-147. doi: 10.1016/bs.aambs.2016.02.001. Epub 2016 Mar 21. Review.

PMID:
27261782
21.

A complete annotation of the chromosomes of the cellulase producer Trichoderma reesei provides insights in gene clusters, their expression and reveals genes required for fitness.

Druzhinina IS, Kopchinskiy AG, Kubicek EM, Kubicek CP.

Biotechnol Biofuels. 2016 Mar 29;9:75. doi: 10.1186/s13068-016-0488-z. eCollection 2016.

22.

Small genome of the fungus Escovopsis weberi, a specialized disease agent of ant agriculture.

de Man TJ, Stajich JE, Kubicek CP, Teiling C, Chenthamara K, Atanasova L, Druzhinina IS, Levenkova N, Birnbaum SS, Barribeau SM, Bozick BA, Suen G, Currie CR, Gerardo NM.

Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3567-72. doi: 10.1073/pnas.1518501113. Epub 2016 Mar 14.

23.

Genome Sequence and Annotation of Trichoderma parareesei, the Ancestor of the Cellulase Producer Trichoderma reesei.

Yang D, Pomraning K, Kopchinskiy A, Karimi Aghcheh R, Atanasova L, Chenthamara K, Baker SE, Zhang R, Shen Q, Freitag M, Kubicek CP, Druzhinina IS.

Genome Announc. 2015 Aug 13;3(4). pii: e00885-15. doi: 10.1128/genomeA.00885-15.

24.

The neutral metallopeptidase NMP1 of Trichoderma guizhouense is required for mycotrophy and self-defence.

Zhang J, Bayram Akcapinar G, Atanasova L, Rahimi MJ, Przylucka A, Yang D, Kubicek CP, Zhang R, Shen Q, Druzhinina IS.

Environ Microbiol. 2016 Feb;18(2):580-97. doi: 10.1111/1462-2920.12966. Epub 2015 Aug 17.

PMID:
26118314
25.

Enhanced cutinase-catalyzed hydrolysis of polyethylene terephthalate by covalent fusion to hydrophobins.

Ribitsch D, Herrero Acero E, Przylucka A, Zitzenbacher S, Marold A, Gamerith C, Tscheließnig R, Jungbauer A, Rennhofer H, Lichtenegger H, Amenitsch H, Bonazza K, Kubicek CP, Druzhinina IS, Guebitz GM.

Appl Environ Microbiol. 2015 Jun;81(11):3586-92. doi: 10.1128/AEM.04111-14. Epub 2015 Mar 20.

26.

The fungal cerato-platanin protein EPL1 forms highly ordered layers at hydrophobic/hydrophilic interfaces.

Bonazza K, Gaderer R, Neudl S, Przylucka A, Allmaier G, Druzhinina IS, Grothe H, Friedbacher G, Seidl-Seiboth V.

Soft Matter. 2015 Mar 7;11(9):1723-32. doi: 10.1039/c4sm02389g.

PMID:
25599344
27.

Analysis of the Phlebiopsis gigantea genome, transcriptome and secretome provides insight into its pioneer colonization strategies of wood.

Hori C, Ishida T, Igarashi K, Samejima M, Suzuki H, Master E, Ferreira P, Ruiz-Dueñas FJ, Held B, Canessa P, Larrondo LF, Schmoll M, Druzhinina IS, Kubicek CP, Gaskell JA, Kersten P, St John F, Glasner J, Sabat G, Splinter BonDurant S, Syed K, Yadav J, Mgbeahuruike AC, Kovalchuk A, Asiegbu FO, Lackner G, Hoffmeister D, Rencoret J, Gutiérrez A, Sun H, Lindquist E, Barry K, Riley R, Grigoriev IV, Henrissat B, Kües U, Berka RM, Martínez AT, Covert SF, Blanchette RA, Cullen D.

PLoS Genet. 2014 Dec 4;10(12):e1004759. doi: 10.1371/journal.pgen.1004759. eCollection 2014 Dec.

28.

The VELVET A orthologue VEL1 of Trichoderma reesei regulates fungal development and is essential for cellulase gene expression.

Karimi Aghcheh R, Németh Z, Atanasova L, Fekete E, Paholcsek M, Sándor E, Aquino B, Druzhinina IS, Karaffa L, Kubicek CP.

PLoS One. 2014 Nov 11;9(11):e112799. doi: 10.1371/journal.pone.0112799. eCollection 2014.

29.

The polyketide synthase gene pks4 of Trichoderma reesei provides pigmentation and stress resistance.

Atanasova L, Knox BP, Kubicek CP, Druzhinina IS, Baker SE.

Eukaryot Cell. 2013 Nov;12(11):1499-508. doi: 10.1128/EC.00103-13. Epub 2013 Sep 13.

30.

The putative protein methyltransferase LAE1 of Trichoderma atroviride is a key regulator of asexual development and mycoparasitism.

Karimi Aghcheh R, Druzhinina IS, Kubicek CP.

PLoS One. 2013 Jun 24;8(6):e67144. doi: 10.1371/journal.pone.0067144. Print 2013.

31.

Two novel class II hydrophobins from Trichoderma spp. stimulate enzymatic hydrolysis of poly(ethylene terephthalate) when expressed as fusion proteins.

Espino-Rammer L, Ribitsch D, Przylucka A, Marold A, Greimel KJ, Herrero Acero E, Guebitz GM, Kubicek CP, Druzhinina IS.

Appl Environ Microbiol. 2013 Jul;79(14):4230-8. doi: 10.1128/AEM.01132-13. Epub 2013 May 3.

32.

Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism.

Atanasova L, Le Crom S, Gruber S, Coulpier F, Seidl-Seiboth V, Kubicek CP, Druzhinina IS.

BMC Genomics. 2013 Feb 22;14:121. doi: 10.1186/1471-2164-14-121.

33.

The intracellular galactoglycome in Trichoderma reesei during growth on lactose.

Karaffa L, Coulier L, Fekete E, Overkamp KM, Druzhinina IS, Mikus M, Seiboth B, Novák L, Punt PJ, Kubicek CP.

Appl Microbiol Biotechnol. 2013 Jun;97(12):5447-56. doi: 10.1007/s00253-012-4667-y. Epub 2013 Jan 9.

PMID:
23299458
34.

Isotope-assisted screening for iron-containing metabolites reveals a high degree of diversity among known and unknown siderophores produced by Trichoderma spp.

Lehner SM, Atanasova L, Neumann NK, Krska R, Lemmens M, Druzhinina IS, Schuhmacher R.

Appl Environ Microbiol. 2013 Jan;79(1):18-31. doi: 10.1128/AEM.02339-12. Epub 2012 Oct 12.

35.

The Longibrachiatum Clade of Trichoderma: a revision with new species.

Samuels GJ, Ismaiel A, Mulaw TB, Szakacs G, Druzhinina IS, Kubicek CP, Jaklitsch WM.

Fungal Divers. 2012 Jul 1;55(1):77-108.

36.

Novel traits of Trichoderma predicted through the analysis of its secretome.

Druzhinina IS, Shelest E, Kubicek CP.

FEMS Microbiol Lett. 2012 Dec;337(1):1-9. doi: 10.1111/j.1574-6968.2012.02665.x. Epub 2012 Sep 18. Review.

37.

The production of multiple small peptaibol families by single 14-module Peptide synthetases in Trichoderma/Hypocrea.

Degenkolb T, Karimi Aghcheh R, Dieckmann R, Neuhof T, Baker SE, Druzhinina IS, Kubicek CP, Brückner H, von Döhren H.

Chem Biodivers. 2012 Mar;9(3):499-535. doi: 10.1002/cbdv.201100212.

PMID:
22422521
38.

Molecular phylogeny and species delimitation in the section Longibrachiatum of Trichoderma.

Druzhinina IS, Komoń-Zelazowska M, Ismaiel A, Jaklitsch W, Mullaw T, Samuels GJ, Kubicek CP.

Fungal Genet Biol. 2012 May;49(5):358-68. doi: 10.1016/j.fgb.2012.02.004. Epub 2012 Mar 1.

39.

Functional analysis of non-ribosomal peptide synthetases (NRPSs) in Trichoderma virens reveals a polyketide synthase (PKS)/NRPS hybrid enzyme involved in the induced systemic resistance response in maize.

Mukherjee PK, Buensanteai N, Moran-Diez ME, Druzhinina IS, Kenerley CM.

Microbiology. 2012 Jan;158(Pt 1):155-65. doi: 10.1099/mic.0.052159-0. Epub 2011 Nov 10.

PMID:
22075027
40.

Taxon-specific metagenomics of Trichoderma reveals a narrow community of opportunistic species that regulate each other's development.

Friedl MA, Druzhinina IS.

Microbiology. 2012 Jan;158(Pt 1):69-83. doi: 10.1099/mic.0.052555-0. Epub 2011 Nov 10.

41.

Trichoderma: the genomics of opportunistic success.

Druzhinina IS, Seidl-Seiboth V, Herrera-Estrella A, Horwitz BA, Kenerley CM, Monte E, Mukherjee PK, Zeilinger S, Grigoriev IV, Kubicek CP.

Nat Rev Microbiol. 2011 Sep 16;9(10):749-59. doi: 10.1038/nrmicro2637. Review. Erratum in: Nat Rev Microbiol. 2011;9(12):896.

PMID:
21921934
42.

Marine isolates of Trichoderma spp. as potential halotolerant agents of biological control for arid-zone agriculture.

Gal-Hemed I, Atanasova L, Komon-Zelazowska M, Druzhinina IS, Viterbo A, Yarden O.

Appl Environ Microbiol. 2011 Aug;77(15):5100-9. doi: 10.1128/AEM.00541-11. Epub 2011 Jun 10.

43.

The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation.

Portnoy T, Margeot A, Linke R, Atanasova L, Fekete E, Sándor E, Hartl L, Karaffa L, Druzhinina IS, Seiboth B, Le Crom S, Kubicek CP.

BMC Genomics. 2011 May 27;12:269. doi: 10.1186/1471-2164-12-269.

44.

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.

Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes-Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Döhren H, Ebbole DJ, Esquivel-Naranjo EU, Fekete E, Flipphi M, Glaser F, Gómez-Rodríguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernández-Oñate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lübeck M, Lübeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti-Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo-Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV.

Genome Biol. 2011;12(4):R40. doi: 10.1186/gb-2011-12-4-r40. Epub 2011 Apr 18.

45.

Muscodor fengyangensis sp. nov. from southeast China: morphology, physiology and production of volatile compounds.

Zhang CL, Wang GP, Mao LJ, Komon-Zelazowska M, Yuan ZL, Lin FC, Druzhinina IS, Kubicek CP.

Fungal Biol. 2010 Oct;114(10):797-808. doi: 10.1016/j.funbio.2010.07.006. Epub 2010 Jul 29.

PMID:
20943189
46.

Clonal species Trichoderma parareesei sp. nov. likely resembles the ancestor of the cellulase producer Hypocrea jecorina/T. reesei.

Atanasova L, Jaklitsch WM, Komoń-Zelazowska M, Kubicek CP, Druzhinina IS.

Appl Environ Microbiol. 2010 Nov;76(21):7259-67. doi: 10.1128/AEM.01184-10. Epub 2010 Sep 3.

47.

The Trichoderma harzianum demon: complex speciation history resulting in coexistence of hypothetical biological species, recent agamospecies and numerous relict lineages.

Druzhinina IS, Kubicek CP, Komoń-Zelazowska M, Mulaw TB, Bissett J.

BMC Evol Biol. 2010 Apr 1;10:94. doi: 10.1186/1471-2148-10-94.

48.

Review: Global nutrient profiling by Phenotype MicroArrays: a tool complementing genomic and proteomic studies in conidial fungi.

Atanasova L, Druzhinina IS.

J Zhejiang Univ Sci B. 2010 Mar;11(3):151-68. doi: 10.1631/jzus.B1000007. Review.

49.

Evolution and ecophysiology of the industrial producer Hypocrea jecorina (Anamorph Trichoderma reesei) and a new sympatric agamospecies related to it.

Druzhinina IS, Komoń-Zelazowska M, Atanasova L, Seidl V, Kubicek CP.

PLoS One. 2010 Feb 12;5(2):e9191. doi: 10.1371/journal.pone.0009191.

50.

Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing.

Le Crom S, Schackwitz W, Pennacchio L, Magnuson JK, Culley DE, Collett JR, Martin J, Druzhinina IS, Mathis H, Monot F, Seiboth B, Cherry B, Rey M, Berka R, Kubicek CP, Baker SE, Margeot A.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16151-6. doi: 10.1073/pnas.0905848106. Epub 2009 Sep 2.

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