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Items: 46

1.

ELIGULUM-A Regulates Lateral Branch and Leaf Development in Barley.

Okagaki RJ, Haaning A, Bilgic H, Heinen S, Druka A, Bayer M, Waugh R, Muehlbauer GJ.

Plant Physiol. 2018 Apr;176(4):2750-2760. doi: 10.1104/pp.17.01459. Epub 2018 Feb 12.

2.

Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility.

Bull H, Casao MC, Zwirek M, Flavell AJ, Thomas WTB, Guo W, Zhang R, Rapazote-Flores P, Kyriakidis S, Russell J, Druka A, McKim SM, Waugh R.

Nat Commun. 2017 Oct 16;8(1):936. doi: 10.1038/s41467-017-00940-7.

3.

HvDep1 Is a Positive Regulator of Culm Elongation and Grain Size in Barley and Impacts Yield in an Environment-Dependent Manner.

Wendt T, Holme I, Dockter C, Preuß A, Thomas W, Druka A, Waugh R, Hansson M, Braumann I.

PLoS One. 2016 Dec 22;11(12):e0168924. doi: 10.1371/journal.pone.0168924. eCollection 2016.

4.

A Homolog of Blade-On-Petiole 1 and 2 (BOP1/2) Controls Internode Length and Homeotic Changes of the Barley Inflorescence.

Jost M, Taketa S, Mascher M, Himmelbach A, Yuo T, Shahinnia F, Rutten T, Druka A, Schmutzer T, Steuernagel B, Beier S, Taudien S, Scholz U, Morgante M, Waugh R, Stein N.

Plant Physiol. 2016 Jun;171(2):1113-27. doi: 10.1104/pp.16.00124. Epub 2016 Apr 14.

5.

The INDETERMINATE DOMAIN Protein BROAD LEAF1 Limits Barley Leaf Width by Restricting Lateral Proliferation.

Jöst M, Hensel G, Kappel C, Druka A, Sicard A, Hohmann U, Beier S, Himmelbach A, Waugh R, Kumlehn J, Stein N, Lenhard M.

Curr Biol. 2016 Apr 4;26(7):903-9. doi: 10.1016/j.cub.2016.01.047. Epub 2016 Mar 17.

6.

The barley Uniculme4 gene encodes a BLADE-ON-PETIOLE-like protein that controls tillering and leaf patterning.

Tavakol E, Okagaki R, Verderio G, Shariati J V, Hussien A, Bilgic H, Scanlon MJ, Todt NR, Close TJ, Druka A, Waugh R, Steuernagel B, Ariyadasa R, Himmelbach A, Stein N, Muehlbauer GJ, Rossini L.

Plant Physiol. 2015 May;168(1):164-74. doi: 10.1104/pp.114.252882. Epub 2015 Mar 27.

7.

Induced variations in brassinosteroid genes define barley height and sturdiness, and expand the green revolution genetic toolkit.

Dockter C, Gruszka D, Braumann I, Druka A, Druka I, Franckowiak J, Gough SP, Janeczko A, Kurowska M, Lundqvist J, Lundqvist U, Marzec M, Matyszczak I, Müller AH, Oklestkova J, Schulz B, Zakhrabekova S, Hansson M.

Plant Physiol. 2014 Dec;166(4):1912-27. doi: 10.1104/pp.114.250738. Epub 2014 Oct 20.

8.

An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley.

Liu H, Bayer M, Druka A, Russell JR, Hackett CA, Poland J, Ramsay L, Hedley PE, Waugh R.

BMC Genomics. 2014 Feb 6;15:104. doi: 10.1186/1471-2164-15-104.

9.

Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence.

Houston K, McKim SM, Comadran J, Bonar N, Druka I, Uzrek N, Cirillo E, Guzy-Wrobelska J, Collins NC, Halpin C, Hansson M, Dockter C, Druka A, Waugh R.

Proc Natl Acad Sci U S A. 2013 Oct 8;110(41):16675-80. doi: 10.1073/pnas.1311681110. Epub 2013 Sep 24.

10.

The rpg4-mediated resistance to wheat stem rust (Puccinia graminis) in barley (Hordeum vulgare) requires Rpg5, a second NBS-LRR gene, and an actin depolymerization factor.

Wang X, Richards J, Gross T, Druka A, Kleinhofs A, Steffenson B, Acevedo M, Brueggeman R.

Mol Plant Microbe Interact. 2013 Apr;26(4):407-18. doi: 10.1094/MPMI-06-12-0146-R.

11.

Analysis of the barley bract suppression gene Trd1.

Houston K, Druka A, Bonar N, Macaulay M, Lundqvist U, Franckowiak J, Morgante M, Stein N, Waugh R.

Theor Appl Genet. 2012 Jun;125(1):33-45. doi: 10.1007/s00122-012-1814-x. Epub 2012 Mar 7.

PMID:
22395962
12.

Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range extension in cultivated barley.

Zakhrabekova S, Gough SP, Braumann I, Müller AH, Lundqvist J, Ahmann K, Dockter C, Matyszczak I, Kurowska M, Druka A, Waugh R, Graner A, Stein N, Steuernagel B, Lundqvist U, Hansson M.

Proc Natl Acad Sci U S A. 2012 Mar 13;109(11):4326-31. doi: 10.1073/pnas.1113009109. Epub 2012 Feb 27.

13.

High resolution mapping of Dense spike-ar (dsp.ar) to the genetic centromere of barley chromosome 7H.

Shahinnia F, Druka A, Franckowiak J, Morgante M, Waugh R, Stein N.

Theor Appl Genet. 2012 Feb;124(2):373-84. doi: 10.1007/s00122-011-1712-7. Epub 2011 Sep 30.

PMID:
21959909
14.

INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1.

Ramsay L, Comadran J, Druka A, Marshall DF, Thomas WT, Macaulay M, MacKenzie K, Simpson C, Fuller J, Bonar N, Hayes PM, Lundqvist U, Franckowiak JD, Close TJ, Muehlbauer GJ, Waugh R.

Nat Genet. 2011 Feb;43(2):169-72. doi: 10.1038/ng.745. Epub 2011 Jan 9.

PMID:
21217754
15.

Genetic dissection of barley morphology and development.

Druka A, Franckowiak J, Lundqvist U, Bonar N, Alexander J, Houston K, Radovic S, Shahinnia F, Vendramin V, Morgante M, Stein N, Waugh R.

Plant Physiol. 2011 Feb;155(2):617-27. doi: 10.1104/pp.110.166249. Epub 2010 Nov 18.

16.

Differential gene expression in nearly isogenic lines with QTL for partial resistance to Puccinia hordei in barley.

Chen X, Niks RE, Hedley PE, Morris J, Druka A, Marcel TC, Vels A, Waugh R.

BMC Genomics. 2010 Nov 11;11:629. doi: 10.1186/1471-2164-11-629.

17.

Exploiting induced variation to dissect quantitative traits in barley.

Druka A, Franckowiak J, Lundqvist U, Bonar N, Alexander J, Guzy-Wrobelska J, Ramsay L, Druka I, Grant I, Macaulay M, Vendramin V, Shahinnia F, Radovic S, Houston K, Harrap D, Cardle L, Marshall D, Morgante M, Stein N, Waugh R.

Biochem Soc Trans. 2010 Apr;38(2):683-8. doi: 10.1042/BST0380683. Review.

PMID:
20298243
18.

An eQTL analysis of partial resistance to Puccinia hordei in barley.

Chen X, Hackett CA, Niks RE, Hedley PE, Booth C, Druka A, Marcel TC, Vels A, Bayer M, Milne I, Morris J, Ramsay L, Marshall D, Cardle L, Waugh R.

PLoS One. 2010 Jan 6;5(1):e8598. doi: 10.1371/journal.pone.0008598.

19.

[The transcriptome analysis of barley (Hordeum vulgare L.) using the Affymetrix Barley1 GeneChip].

Potokina EK, Druka A, Luo Z, Waugh R, Kearsey MJ.

Genetika. 2009 Nov;45(11):1493-505. Russian.

PMID:
20058796
20.

Expression quantitative trait loci analysis in plants.

Druka A, Potokina E, Luo Z, Jiang N, Chen X, Kearsey M, Waugh R.

Plant Biotechnol J. 2010 Jan;8(1):10-27. doi: 10.1111/j.1467-7652.2009.00460.x. Review.

21.

Development and implementation of high-throughput SNP genotyping in barley.

Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S, Bozdag S, Roose ML, Moscou MJ, Chao S, Varshney RK, Szucs P, Sato K, Hayes PM, Matthews DE, Kleinhofs A, Muehlbauer GJ, DeYoung J, Marshall DF, Madishetty K, Fenton RD, Condamine P, Graner A, Waugh R.

BMC Genomics. 2009 Dec 4;10:582. doi: 10.1186/1471-2164-10-582.

22.

Comparative transcriptomics in the Triticeae.

Schreiber AW, Sutton T, Caldo RA, Kalashyan E, Lovell B, Mayo G, Muehlbauer GJ, Druka A, Waugh R, Wise RP, Langridge P, Baumann U.

BMC Genomics. 2009 Jun 29;10:285. doi: 10.1186/1471-2164-10-285.

23.

Transcript profiling and expression level mapping.

Potokina E, Druka A, Kearsey MJ.

Methods Mol Biol. 2009;513:81-92. doi: 10.1007/978-1-59745-427-8_5.

PMID:
19347647
24.

Robust detection and genotyping of single feature polymorphisms from gene expression data.

Wang M, Hu X, Li G, Leach LJ, Potokina E, Druka A, Waugh R, Kearsey MJ, Luo Z.

PLoS Comput Biol. 2009 Mar;5(3):e1000317. doi: 10.1371/journal.pcbi.1000317. Epub 2009 Mar 13.

25.

Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork.

Druka A, Druka I, Centeno AG, Li H, Sun Z, Thomas WT, Bonar N, Steffenson BJ, Ullrich SE, Kleinhofs A, Wise RP, Close TJ, Potokina E, Luo Z, Wagner C, Schweizer GF, Marshall DF, Kearsey MJ, Williams RW, Waugh R.

BMC Genet. 2008 Nov 18;9:73. doi: 10.1186/1471-2156-9-73.

26.

The stem rust resistance gene Rpg5 encodes a protein with nucleotide-binding-site, leucine-rich, and protein kinase domains.

Brueggeman R, Druka A, Nirmala J, Cavileer T, Drader T, Rostoks N, Mirlohi A, Bennypaul H, Gill U, Kudrna D, Whitelaw C, Kilian A, Han F, Sun Y, Gill K, Steffenson B, Kleinhofs A.

Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):14970-5. doi: 10.1073/pnas.0807270105. Epub 2008 Sep 23.

27.

Tissue-dependent limited pleiotropy affects gene expression in barley.

Potokina E, Druka A, Luo Z, Moscou M, Wise R, Waugh R, Kearsey M.

Plant J. 2008 Oct;56(2):287-296. doi: 10.1111/j.1365-313X.2008.03601.x. Epub 2008 Jul 4.

28.

The 172-kb genomic DNA region of the O. rufipogon yld1.1 locus: comparative sequence analysis with O. sativa ssp. japonica and O. sativa ssp. indica.

Song BK, Hein I, Druka A, Waugh R, Marshall D, Nadarajah K, Yap SJ, Ratnam W.

Funct Integr Genomics. 2009 Feb;9(1):97-108. doi: 10.1007/s10142-008-0091-x. Epub 2008 Jul 17.

PMID:
18633654
29.

Methods for evaluating gene expression from Affymetrix microarray datasets.

Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.

BMC Bioinformatics. 2008 Jun 17;9:284. doi: 10.1186/1471-2105-9-284.

30.

Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley.

Druka A, Potokina E, Luo Z, Bonar N, Druka I, Zhang L, Marshall DF, Steffenson BJ, Close TJ, Wise RP, Kleinhofs A, Williams RW, Kearsey MJ, Waugh R.

Theor Appl Genet. 2008 Jul;117(2):261-72. doi: 10.1007/s00122-008-0771-x. Epub 2008 Apr 30.

PMID:
18542913
31.

Gene expression quantitative trait locus analysis of 16 000 barley genes reveals a complex pattern of genome-wide transcriptional regulation.

Potokina E, Druka A, Luo Z, Wise R, Waugh R, Kearsey M.

Plant J. 2008 Jan;53(1):90-101. Epub 2007 Oct 17.

32.

SFP genotyping from affymetrix arrays is robust but largely detects cis-acting expression regulators.

Luo ZW, Potokina E, Druka A, Wise R, Waugh R, Kearsey MJ.

Genetics. 2007 Jun;176(2):789-800. Epub 2007 Apr 3.

33.

An atlas of gene expression from seed to seed through barley development.

Druka A, Muehlbauer G, Druka I, Caldo R, Baumann U, Rostoks N, Schreiber A, Wise R, Close T, Kleinhofs A, Graner A, Schulman A, Langridge P, Sato K, Hayes P, McNicol J, Marshall D, Waugh R.

Funct Integr Genomics. 2006 Jul;6(3):202-11. Epub 2006 Mar 18.

PMID:
16547597
34.

Evidence that the recessive bymovirus resistance locus rym4 in barley corresponds to the eukaryotic translation initiation factor 4E gene.

Kanyuka K, Druka A, Caldwell DG, Tymon A, McCallum N, Waugh R, Adams MJ.

Mol Plant Pathol. 2005 Jul 1;6(4):449-58. doi: 10.1111/j.1364-3703.2005.00294.x.

PMID:
20565670
35.

A barley gene family homologous to the maize rust resistance gene Rp1-D.

Rostoks N, Zale M, Soule J, Brueggeman R, Druka A, Kudrna D, Steffenson B, Kleinhofs A.

Theor Appl Genet. 2002 Jun;104(8):1298-1306. Epub 2002 May 8.

PMID:
12582584
36.

Chalcone isomerase gene from rice (Oryza sativa) and barley (Hordeum vulgare): physical, genetic and mutation mapping.

Druka A, Kudrna D, Rostoks N, Brueggeman R, von Wettstein D, Kleinhofs A.

Gene. 2003 Jan 2;302(1-2):171-8.

PMID:
12527208
37.

The barley stem rust-resistance gene Rpg1 is a novel disease-resistance gene with homology to receptor kinases.

Brueggeman R, Rostoks N, Kudrna D, Kilian A, Han F, Chen J, Druka A, Steffenson B, Kleinhofs A.

Proc Natl Acad Sci U S A. 2002 Jul 9;99(14):9328-33. Epub 2002 Jun 20.

38.

Genomic sequencing reveals gene content, genomic organization, and recombination relationships in barley.

Rostoks N, Park YJ, Ramakrishna W, Ma J, Druka A, Shiloff BA, SanMiguel PJ, Jiang Z, Brueggeman R, Sandhu D, Gill K, Bennetzen JL, Kleinhofs A.

Funct Integr Genomics. 2002 May;2(1-2):51-9. Epub 2002 Apr 25.

PMID:
12021850
39.

LINEs and gypsy-like retrotransposons in Hordeum species.

Vershinin AV, Druka A, Alkhimova AG, Kleinhofs A, Heslop-Harrison JS.

Plant Mol Biol. 2002 May;49(1):1-14.

PMID:
12008894
40.

Physical and genetic mapping of barley (Hordeum vulgare) germin-like cDNAs.

Druka A, Kudrna D, Kannangara CG, von Wettstein D, Kleinhofs A.

Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):850-5. Epub 2002 Jan 15.

41.

Physical mapping of the barley stem rust resistance gene rpg4.

Druka A, Kudrna D, Han F, Kilian A, Steffenson B, Frisch D, Tomkins J, Wing R, Kleinhofs A.

Mol Gen Genet. 2000 Oct;264(3):283-90.

PMID:
11085268
42.

Genetic variation of rice tungro bacilliform virus in the Philippines.

Villegas LC, Druka A, Bajet NB, Hull R.

Virus Genes. 1997;15(3):195-201.

PMID:
9482585
43.
44.

Detection of rice tungro bacilliform virus gene products in vivo.

Hay J, Grieco F, Druka A, Pinner M, Lee SC, Hull R.

Virology. 1994 Dec;205(2):430-7.

PMID:
7526539
45.

[Determination of potato spindle tumor viroid and chrysanthenum stund viroid using biotinylated olideoxyribonucleotides].

Meldraĭs Ia, Lebedeva IV, Druka AIa, Ivanovskaia MG, Shabarova ZA, Gurinovich TI, Birznieks KA, Keks VG, Zeĭdaka AA.

Mol Biol (Mosk). 1992 May-Jun;26(3):540-5. Russian.

PMID:
1406609
46.

[Cloning of Chrysanthium stund virion cDNA in pUC19 plasmid and the use of cloned cDNA for detecting the virion].

Meldraĭs IaA, Line IE, Ivanova MN, Vinkele RA, Druka AIa, Gurinovich TI.

Mol Biol (Mosk). 1991 Sep-Oct;25(5):1301-7. Russian.

PMID:
1753957

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