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Items: 23

1.

Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly.

Wang O, Chin R, Cheng X, Wu MKY, Mao Q, Tang J, Sun Y, Anderson E, Lam HK, Chen D, Zhou Y, Wang L, Fan F, Zou Y, Xie Y, Zhang RY, Drmanac S, Nguyen D, Xu C, Villarosa C, Gablenz S, Barua N, Nguyen S, Tian W, Liu JS, Wang J, Liu X, Qi X, Chen A, Wang H, Dong Y, Zhang W, Alexeev A, Yang H, Wang J, Kristiansen K, Xu X, Drmanac R, Peters BA.

Genome Res. 2019 May;29(5):798-808. doi: 10.1101/gr.245126.118. Epub 2019 Apr 2.

2.

Reliable multiplex sequencing with rare index mis-assignment on DNB-based NGS platform.

Li Q, Zhao X, Zhang W, Wang L, Wang J, Xu D, Mei Z, Liu Q, Du S, Li Z, Liang X, Wang X, Wei H, Liu P, Zou J, Shen H, Chen A, Drmanac S, Liu JS, Li L, Jiang H, Zhang Y, Wang J, Yang H, Xu X, Drmanac R, Jiang Y.

BMC Genomics. 2019 Mar 13;20(1):215. doi: 10.1186/s12864-019-5569-5.

3.

Clinical and genetic analysis of a rare syndrome associated with neoteny.

Walker RF, Ciotlos S, Mao Q, Chin R, Drmanac S, Barua N, Agarwal MR, Zhang RY, Li Z, Wu MKY, Sun K, Lee K, Nguyen S, Liu JS, Carnevali P, Drmanac R, Peters BA.

Genet Med. 2018 Apr;20(5):495-502. doi: 10.1038/gim.2017.140. Epub 2017 Sep 21.

PMID:
29758565
4.

Isolation and whole genome sequencing of fetal cells from maternal blood towards the ultimate non-invasive prenatal testing.

Chen F, Liu P, Gu Y, Zhu Z, Nanisetti A, Lan Z, Huang Z, Liu JS, Kang X, Deng Y, Luo L, Jiang D, Qiu Y, Pan J, Xia J, Xiong K, Liu C, Xie L, Shi Q, Li J, Zhang X, Wang W, Drmanac S, Bolund L, Jiang H, Drmanac R, Xu X.

Prenat Diagn. 2017 Dec;37(13):1311-1321. doi: 10.1002/pd.5186.

PMID:
29144536
5.

Quantitative Whole Genome Sequencing of Circulating Tumor Cells Enables Personalized Combination Therapy of Metastatic Cancer.

Gulbahce N, Magbanua MJM, Chin R, Agarwal MR, Luo X, Liu J, Hayden DM, Mao Q, Ciotlos S, Li Z, Chen Y, Chen X, Li Y, Zhang RY, Lee K, Tearle R, Park E, Drmanac S, Rugo HS, Park JW, Drmanac R, Peters BA.

Cancer Res. 2017 Aug 15;77(16):4530-4541. doi: 10.1158/0008-5472.CAN-17-0688.

6.

cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs.

Fehlmann T, Reinheimer S, Geng C, Su X, Drmanac S, Alexeev A, Zhang C, Backes C, Ludwig N, Hart M, An D, Zhu Z, Xu C, Chen A, Ni M, Liu J, Li Y, Poulter M, Li Y, Stähler C, Drmanac R, Xu X, Meese E, Keller A.

Clin Epigenetics. 2016 Nov 21;8:123. eCollection 2016.

7.

De novo assembly of a haplotype-resolved human genome.

Cao H, Wu H, Luo R, Huang S, Sun Y, Tong X, Xie Y, Liu B, Yang H, Zheng H, Li J, Li B, Wang Y, Yang F, Sun P, Liu S, Gao P, Huang H, Sun J, Chen D, He G, Huang W, Huang Z, Li Y, Tellier LC, Liu X, Feng Q, Xu X, Zhang X, Bolund L, Krogh A, Kristiansen K, Drmanac R, Drmanac S, Nielsen R, Li S, Wang J, Yang H, Li Y, Wong GK, Wang J.

Nat Biotechnol. 2015 Jun;33(6):617-22. doi: 10.1038/nbt.3200. Epub 2015 May 25.

PMID:
26006006
8.

Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays.

Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, Carnevali P, Nazarenko I, Nilsen GB, Yeung G, Dahl F, Fernandez A, Staker B, Pant KP, Baccash J, Borcherding AP, Brownley A, Cedeno R, Chen L, Chernikoff D, Cheung A, Chirita R, Curson B, Ebert JC, Hacker CR, Hartlage R, Hauser B, Huang S, Jiang Y, Karpinchyk V, Koenig M, Kong C, Landers T, Le C, Liu J, McBride CE, Morenzoni M, Morey RE, Mutch K, Perazich H, Perry K, Peters BA, Peterson J, Pethiyagoda CL, Pothuraju K, Richter C, Rosenbaum AM, Roy S, Shafto J, Sharanhovich U, Shannon KW, Sheppy CG, Sun M, Thakuria JV, Tran A, Vu D, Zaranek AW, Wu X, Drmanac S, Oliphant AR, Banyai WC, Martin B, Ballinger DG, Church GM, Reid CA.

Science. 2010 Jan 1;327(5961):78-81. doi: 10.1126/science.1181498. Epub 2009 Nov 5.

9.

Combinatorial sequencing-by-hybridization: analysis of the NF1 gene.

Schirinzi A, Drmanac S, Dallapiccola B, Huang S, Scott K, De Luca A, Swanson D, Drmanac R, Surrey S, Fortina P.

Genet Test. 2006 Spring;10(1):8-17.

PMID:
16544997
10.

Multiplexed SNP genotyping using nanobarcode particle technology.

Sha MY, Walton ID, Norton SM, Taylor M, Yamanaka M, Natan MJ, Xu C, Drmanac S, Huang S, Borcherding A, Drmanac R, Penn SG.

Anal Bioanal Chem. 2006 Feb;384(3):658-66. Epub 2006 Jan 19.

PMID:
16421712
11.

Identification of APC gene mutations in colorectal cancer using universal microarray-based combinatorial sequencing-by-hybridization.

Cowie S, Drmanac S, Swanson D, Delgrosso K, Huang S, du Sart D, Drmanac R, Surrey S, Fortina P.

Hum Mutat. 2004 Sep;24(3):261-71.

PMID:
15300853
12.

Selective DNA amplification from complex genomes using universal double-sided adapters.

Callow MJ, Drmanac S, Drmanac R.

Nucleic Acids Res. 2004 Jan 28;32(2):e21.

13.

Sequencing by hybridization (SBH): advantages, achievements, and opportunities.

Drmanac R, Drmanac S, Chui G, Diaz R, Hou A, Jin H, Jin P, Kwon S, Lacy S, Moeur B, Shafto J, Swanson D, Ukrainczyk T, Xu C, Little D.

Adv Biochem Eng Biotechnol. 2002;77:75-101. Review.

PMID:
12227738
14.

Elevated baseline triglyceride levels modulate effects of HMGCoA reductase inhibitors on plasma lipoproteins.

Drmanac S, Heilbron DC, Pullinger CR, Jafari M, Gietzen D, Ukrainczyk T, Cho MH, Frost PH, Siradze K, Drmanac RT, Kane JP, Malloy MJ.

J Cardiovasc Pharmacol Ther. 2001 Jan;6(1):47-56.

PMID:
11452336
15.

Sequencing by hybridization arrays.

Drmanac R, Drmanac S.

Methods Mol Biol. 2001;170:39-51. Review. No abstract available.

PMID:
11357688
16.

DNA sequencing by hybridization with arrays of samples or probes.

Drmanac R, Drmanac S, Baier J, Chui G, Coleman D, Diaz R, Gietzen D, Hou A, Jin H, Ukrainczyk T, Xu C.

Methods Mol Biol. 2001;170:173-9. No abstract available.

PMID:
11357681
17.

cDNA screening by array hybridization.

Drmanac R, Drmanac S.

Methods Enzymol. 1999;303:165-78. No abstract available.

PMID:
10349645
18.

Accurate sequencing by hybridization for DNA diagnostics and individual genomics.

Drmanac S, Kita D, Labat I, Hauser B, Schmidt C, Burczak JD, Drmanac R.

Nat Biotechnol. 1998 Jan;16(1):54-8.

PMID:
9447594
19.

Gene-representing cDNA clusters defined by hybridization of 57,419 clones from infant brain libraries with short oligonucleotide probes.

Drmanac S, Stavropoulos NA, Labat I, Vonau J, Hauser B, Soares MB, Drmanac R.

Genomics. 1996 Oct 1;37(1):29-40.

PMID:
8921367
20.
21.

DNA sequence determination by hybridization: a strategy for efficient large-scale sequencing.

Drmanac R, Drmanac S, Strezoska Z, Paunesku T, Labat I, Zeremski M, Snoddy J, Funkhouser WK, Koop B, Hood L, et al.

Science. 1993 Jun 11;260(5114):1649-52. Erratum in: Science 1994 Feb 4;163(5147):596.

PMID:
8503011
22.

Sequencing by hybridization: towards an automated sequencing of one million M13 clones arrayed on membranes.

Drmanac R, Drmanac S, Labat I, Crkvenjakov R, Vicentic A, Gemmell A.

Electrophoresis. 1992 Aug;13(8):566-73.

PMID:
1451694
23.

Reliable hybridization of oligonucleotides as short as six nucleotides.

Drmanac R, Strezoska Z, Labat I, Drmanac S, Crkvenjakov R.

DNA Cell Biol. 1990 Sep;9(7):527-34.

PMID:
2222813

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