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Items: 37

1.

Analyzing the stability of gene expression using a simple reaction-diffusion model in an early Drosophila embryo.

McCarthy GD, Drewell RA, Dresch JM.

Math Biosci. 2019 Oct;316:108239. doi: 10.1016/j.mbs.2019.108239. Epub 2019 Aug 24.

PMID:
31454629
2.

Rapid and efficient purification of Drosophila homeodomain transcription factors for biophysical characterization.

Orlomoski R, Bogle A, Loss J, Simons R, Dresch JM, Drewell RA, Spratt DE.

Protein Expr Purif. 2019 Jun;158:9-14. doi: 10.1016/j.pep.2019.02.001. Epub 2019 Feb 7.

PMID:
30738927
3.

Nucleotide Interdependency in Transcription Factor Binding Sites in the Drosophila Genome.

Dresch JM, Zellers RG, Bork DK, Drewell RA.

Gene Regul Syst Bio. 2016 Jun 12;10:21-33. doi: 10.4137/GRSB.S38462. eCollection 2016.

4.

Spatial distribution of predicted transcription factor binding sites in Drosophila ChIP peaks.

Pettie KP, Dresch JM, Drewell RA.

Mech Dev. 2016 Aug;141:51-61. doi: 10.1016/j.mod.2016.06.001. Epub 2016 Jun 2.

5.

Parent-of-origin effects on genome-wide DNA methylation in the Cape honey bee (Apis mellifera capensis) may be confounded by allele-specific methylation.

Remnant EJ, Ashe A, Young PE, Buchmann G, Beekman M, Allsopp MH, Suter CM, Drewell RA, Oldroyd BP.

BMC Genomics. 2016 Mar 12;17:226. doi: 10.1186/s12864-016-2506-8.

6.

Global sensitivity analysis of a dynamic model for gene expression in Drosophila embryos.

McCarthy GD, Drewell RA, Dresch JM.

PeerJ. 2015 Jun 18;3:e1022. doi: 10.7717/peerj.1022. eCollection 2015.

7.

MARZ: an algorithm to combinatorially analyze gapped n-mer models of transcription factor binding.

Zellers RG, Drewell RA, Dresch JM.

BMC Bioinformatics. 2015 Jan 31;16:30. doi: 10.1186/s12859-014-0446-3.

8.

The dynamic DNA methylation cycle from egg to sperm in the honey bee Apis mellifera.

Drewell RA, Bush EC, Remnant EJ, Wong GT, Beeler SM, Stringham JL, Lim J, Oldroyd BP.

Development. 2014 Jul;141(13):2702-11. doi: 10.1242/dev.110163. Epub 2014 Jun 12.

9.

Deciphering the combinatorial architecture of a Drosophila homeotic gene enhancer.

Drewell RA, Nevarez MJ, Kurata JS, Winkler LN, Li L, Dresch JM.

Mech Dev. 2014 Feb;131:68-77.

10.

Whole-genome DNA methylation profile of the jewel wasp (Nasonia vitripennis).

Beeler SM, Wong GT, Zheng JM, Bush EC, Remnant EJ, Oldroyd BP, Drewell RA.

G3 (Bethesda). 2014 Mar 20;4(3):383-8. doi: 10.1534/g3.113.008953.

11.

A parent-of-origin effect on honeybee worker ovary size.

Oldroyd BP, Allsopp MH, Roth KM, Remnant EJ, Drewell RA, Beekman M.

Proc Biol Sci. 2013 Nov 27;281(1775):20132388. doi: 10.1098/rspb.2013.2388. Print 2014 Jan 22.

12.

Flanking sequence context-dependent transcription factor binding in early Drosophila development.

Stringham JL, Brown AS, Drewell RA, Dresch JM.

BMC Bioinformatics. 2013 Oct 4;14:298. doi: 10.1186/1471-2105-14-298.

13.

Kin conflict in insect societies: a new epigenetic perspective.

Drewell RA, Lo N, Oxley PR, Oldroyd BP.

Trends Ecol Evol. 2012 Jul;27(7):367-73. doi: 10.1016/j.tree.2012.02.005. Epub 2012 Apr 5.

PMID:
22483741
14.

Transcription factor binding site redundancy in embryonic enhancers of the Drosophila bithorax complex.

Drewell RA.

G3 (Bethesda). 2011 Dec;1(7):603-6. doi: 10.1534/g3.111.001404. Epub 2011 Dec 1.

15.

Molecular dissection of cis-regulatory modules at the Drosophila bithorax complex reveals critical transcription factor signature motifs.

Starr MO, Ho MC, Gunther EJ, Tu YK, Shur AS, Goetz SE, Borok MJ, Kang V, Drewell RA.

Dev Biol. 2011 Nov 15;359(2):290-302. doi: 10.1016/j.ydbio.2011.07.028. Epub 2011 Jul 28.

16.

Transcriptional repression by the proximal exonic region at the human TERT gene.

Wong TC, Sokol ES, Schep AN, Punjiya M, Tran DA, Allan D, Drewell RA.

Gene. 2011 Oct 15;486(1-2):65-73. doi: 10.1016/j.gene.2011.07.016. Epub 2011 Jul 20.

PMID:
21787851
17.

Disruption of the abdominal-B promoter tethering element results in a loss of long-range enhancer-directed Hox gene expression in Drosophila.

Ho MC, Schiller BJ, Akbari OS, Bae E, Drewell RA.

PLoS One. 2011 Jan 21;6(1):e16283. doi: 10.1371/journal.pone.0016283. Erratum in: PLoS One. 2011;6(2). doi: 10.1371/annotation/613079ca-aeae-4d29-bc5c-aa7202e6993e.

18.

Characterization of an ultra-conserved putative cis-regulatory module at the mammalian telomerase reverse transcriptase gene.

Tran DA, Wong TC, Schep AN, Drewell RA.

DNA Cell Biol. 2010 Sep;29(9):499-508. doi: 10.1089/dna.2009.0994.

PMID:
20438356
19.

Dissecting the regulatory switches of development: lessons from enhancer evolution in Drosophila.

Borok MJ, Tran DA, Ho MC, Drewell RA.

Development. 2010 Jan;137(1):5-13. doi: 10.1242/dev.036160. Review.

20.

Functional evolution of cis-regulatory modules at a homeotic gene in Drosophila.

Ho MC, Johnsen H, Goetz SE, Schiller BJ, Bae E, Tran DA, Shur AS, Allen JM, Rau C, Bender W, Fisher WW, Celniker SE, Drewell RA.

PLoS Genet. 2009 Nov;5(11):e1000709. doi: 10.1371/journal.pgen.1000709. Epub 2009 Nov 6.

21.

Non-genic transcription at the Drosophila bithorax complex functional activity of the dark matter of the genome.

Ho MC, Schiller BJ, Goetz SE, Drewell RA.

Int J Dev Biol. 2009;53(4):459-68. doi: 10.1387/ijdb.082647mh. Review.

22.

Between transcription and translation: Re-defining RNA and regulation.

Ho MC, Goetz SE, Schiller BJ, Allen JM, Drewell RA.

Fly (Austin). 2008 May-Jun;2(3):152-5. Epub 2008 May 26.

PMID:
18820456
23.

The abdominal-B promoter tethering element mediates promoter-enhancer specificity at the Drosophila bithorax complex.

Akbari OS, Schiller BJ, Goetz SE, Ho MC, Bae E, Drewell RA.

Fly (Austin). 2007 Nov-Dec;1(6):337-9.

24.

A novel promoter-tethering element regulates enhancer-driven gene expression at the bithorax complex in the Drosophila embryo.

Akbari OS, Bae E, Johnsen H, Villaluz A, Wong D, Drewell RA.

Development. 2008 Jan;135(1):123-31. Epub 2007 Nov 28.

25.

Chromatin looping mediates boundary element promoter interactions.

Celniker SE, Drewell RA.

Bioessays. 2007 Jan;29(1):7-10. Review.

PMID:
17187351
26.

The human and mouse H19 imprinting control regions harbor an evolutionarily conserved silencer element that functions on transgenes in Drosophila.

Arney KL, Bae E, Olsen C, Drewell RA.

Dev Genes Evol. 2006 Dec;216(12):811-9. Epub 2006 Oct 3.

PMID:
17016732
27.

The 3' portion of the mouse H19 Imprinting-Control Region is required for proper tissue-specific expression of the Igf2 gene.

Hagège H, Nasser R, Weber M, Milligan L, Aptel N, Jacquet C, Drewell RA, Dandolo L, Surani MA, Cathala G, Forné T.

Cytogenet Genome Res. 2006;113(1-4):230-7.

PMID:
16575185
28.

Unraveling cis-regulatory mechanisms at the abdominal-A and Abdominal-B genes in the Drosophila bithorax complex.

Akbari OS, Bousum A, Bae E, Drewell RA.

Dev Biol. 2006 May 15;293(2):294-304. Epub 2006 Mar 20. Review.

29.

Characterization of the intergenic RNA profile at abdominal-A and Abdominal-B in the Drosophila bithorax complex.

Bae E, Calhoun VC, Levine M, Lewis EB, Drewell RA.

Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16847-52. Epub 2002 Dec 12.

30.

Transcription defines the embryonic domains of cis-regulatory activity at the Drosophila bithorax complex.

Drewell RA, Bae E, Burr J, Lewis EB.

Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16853-8. Epub 2002 Dec 11.

31.

Novel conserved elements upstream of the H19 gene are transcribed and act as mesodermal enhancers.

Drewell RA, Arney KL, Arima T, Barton SC, Brenton JD, Surani MA.

Development. 2002 Mar;129(5):1205-13.

32.

Methylation-dependent silencing at the H19 imprinting control region by MeCP2.

Drewell RA, Goddard CJ, Thomas JO, Surani MA.

Nucleic Acids Res. 2002 Mar 1;30(5):1139-44.

33.

A conserved imprinting control region at the HYMAI/ZAC domain is implicated in transient neonatal diabetes mellitus.

Arima T, Drewell RA, Arney KL, Inoue J, Makita Y, Hata A, Oshimura M, Wake N, Surani MA.

Hum Mol Genet. 2001 Jul 1;10(14):1475-83.

PMID:
11448939
34.

Epigenetic reprogramming of the genome--from the germ line to the embryo and back again.

Arney KL, Erhardt S, Drewell RA, Surani MA.

Int J Dev Biol. 2001;45(3):533-40. Review.

35.

A novel imprinted gene, HYMAI, is located within an imprinted domain on human chromosome 6 containing ZAC.

Arima T, Drewell RA, Oshimura M, Wake N, Surani MA.

Genomics. 2000 Aug 1;67(3):248-55.

PMID:
10936046
36.

Deletion of a silencer element disrupts H19 imprinting independently of a DNA methylation epigenetic switch.

Drewell RA, Brenton JD, Ainscough JF, Barton SC, Hilton KJ, Arney KL, Dandolo L, Surani MA.

Development. 2000 Aug;127(16):3419-28.

37.

A silencer element identified in Drosophila is required for imprinting of H19 reporter transgenes in mice.

Brenton JD, Drewell RA, Viville S, Hilton KJ, Barton SC, Ainscough JF, Surani MA.

Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):9242-7.

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