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The global diversity of Haemonchus contortus is shaped by human intervention and climate.

Sallé G, Doyle SR, Cortet J, Cabaret J, Berriman M, Holroyd N, Cotton JA.

Nat Commun. 2019 Oct 22;10(1):4811. doi: 10.1038/s41467-019-12695-4.


Evaluation of DNA Extraction Methods on Individual Helminth Egg and Larval Stages for Whole-Genome Sequencing.

Doyle SR, Sankaranarayanan G, Allan F, Berger D, Jimenez Castro PD, Collins JB, Crellen T, Duque-Correa MA, Ellis P, Jaleta TG, Laing R, Maitland K, McCarthy C, Moundai T, Softley B, Thiele E, Ouakou PT, Tushabe JV, Webster JP, Weiss AJ, Lok J, Devaney E, Kaplan RM, Cotton JA, Berriman M, Holroyd N.

Front Genet. 2019 Sep 20;10:826. doi: 10.3389/fgene.2019.00826. eCollection 2019.


Screening the Saccharomyces cerevisiae Nonessential Gene Deletion Library Reveals Diverse Mechanisms of Action for Antifungal Plant Defensins.

Parisi K, Doyle SR, Lee E, Lowe RGT, van der Weerden NL, Anderson MA, Bleackley MR.

Antimicrob Agents Chemother. 2019 Oct 22;63(11). pii: e01097-19. doi: 10.1128/AAC.01097-19. Print 2019 Nov.


Vida PURA: results from a pilot randomized trial of a culturally adapted screening and brief intervention to reduce unhealthy alcohol use among Latino day laborers.

Ornelas IJ, Doyle SR, Torres VN, Serrano SE, Duran B, Donovan DM.

Transl Behav Med. 2019 Nov 25;9(6):1233-1243. doi: 10.1093/tbm/ibz071.


Refugia and anthelmintic resistance: Concepts and challenges.

Hodgkinson JE, Kaplan RM, Kenyon F, Morgan ER, Park AW, Paterson S, Babayan SA, Beesley NJ, Britton C, Chaudhry U, Doyle SR, Ezenwa VO, Fenton A, Howell SB, Laing R, Mable BK, Matthews L, McIntyre J, Milne CE, Morrison TA, Prentice JC, Sargison ND, Williams DJL, Wolstenholme AJ, Devaney E.

Int J Parasitol Drugs Drug Resist. 2019 Aug;10:51-57. doi: 10.1016/j.ijpddr.2019.05.001. Epub 2019 May 17. Review.


Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus.

Doyle SR, Illingworth CJR, Laing R, Bartley DJ, Redman E, Martinelli A, Holroyd N, Morrison AA, Rezansoff A, Tracey A, Devaney E, Berriman M, Sargison N, Cotton JA, Gilleard JS.

BMC Genomics. 2019 Mar 15;20(1):218. doi: 10.1186/s12864-019-5592-6.


Genome-wide Approaches to Investigate Anthelmintic Resistance.

Doyle SR, Cotton JA.

Trends Parasitol. 2019 Apr;35(4):289-301. doi: 10.1016/ Epub 2019 Feb 4. Review.


Power laws and critical fragmentation in global forests.

Saravia LA, Doyle SR, Bond-Lamberty B.

Sci Rep. 2018 Dec 10;8(1):17766. doi: 10.1038/s41598-018-36120-w.


Effects of macroalgae loss in an Antarctic marine food web: applying extinction thresholds to food web studies.

Cordone G, Marina TI, Salinas V, Doyle SR, Saravia LA, Momo FR.

PeerJ. 2018 Sep 12;6:e5531. doi: 10.7717/peerj.5531. eCollection 2018.


Biology and genome of a newly discovered sibling species of Caenorhabditis elegans.

Kanzaki N, Tsai IJ, Tanaka R, Hunt VL, Liu D, Tsuyama K, Maeda Y, Namai S, Kumagai R, Tracey A, Holroyd N, Doyle SR, Woodruff GC, Murase K, Kitazume H, Chai C, Akagi A, Panda O, Ke HM, Schroeder FC, Wang J, Berriman M, Sternberg PW, Sugimoto A, Kikuchi T.

Nat Commun. 2018 Aug 10;9(1):3216. doi: 10.1038/s41467-018-05712-5.


Architecture of marine food webs: To be or not be a 'small-world'.

Marina TI, Saravia LA, Cordone G, Salinas V, Doyle SR, Momo FR.

PLoS One. 2018 May 29;13(5):e0198217. doi: 10.1371/journal.pone.0198217. eCollection 2018.


Effects of glyphosate formulations on the population dynamics of two freshwater cladoceran species.

Reno U, Doyle SR, Momo FR, Regaldo L, Gagneten AM.

Ecotoxicology. 2018 Sep;27(7):784-793. doi: 10.1007/s10646-017-1891-3. Epub 2018 Feb 5.


A Genome Resequencing-Based Genetic Map Reveals the Recombination Landscape of an Outbred Parasitic Nematode in the Presence of Polyploidy and Polyandry.

Doyle SR, Laing R, Bartley DJ, Britton C, Chaudhry U, Gilleard JS, Holroyd N, Mable BK, Maitland K, Morrison AA, Tait A, Tracey A, Berriman M, Devaney E, Cotton JA, Sargison ND.

Genome Biol Evol. 2018 Feb 1;10(2):396-409. doi: 10.1093/gbe/evx269.


Age differences in outcomes among patients in the "Stimulant Abuser Groups to Engage in 12-Step" (STAGE-12) intervention.

Garrett SB, Doyle SR, Peavy KM, Wells EA, Owens MD, Shores-Wilson K, DiCenzo J, Donovan DM.

J Subst Abuse Treat. 2018 Jan;84:21-29. doi: 10.1016/j.jsat.2017.10.012. Epub 2017 Oct 28.


Genome-wide analysis of ivermectin response by Onchocerca volvulus reveals that genetic drift and soft selective sweeps contribute to loss of drug sensitivity.

Doyle SR, Bourguinat C, Nana-Djeunga HC, Kengne-Ouafo JA, Pion SDS, Bopda J, Kamgno J, Wanji S, Che H, Kuesel AC, Walker M, Basáñez MG, Boakye DA, Osei-Atweneboana MY, Boussinesq M, Prichard RK, Grant WN.

PLoS Negl Trop Dis. 2017 Jul 26;11(7):e0005816. doi: 10.1371/journal.pntd.0005816. eCollection 2017 Jul.


PLAG1 deficiency impairs spermatogenesis and sperm motility in mice.

Juma AR, Grommen SVH, O'Bryan MK, O'Connor AE, Merriner DJ, Hall NE, Doyle SR, Damdimopoulou PE, Barriga D, Hart AH, Van de Ven WJM, De Groef B.

Sci Rep. 2017 Jul 13;7(1):5317. doi: 10.1038/s41598-017-05676-4.


Genomic introgression mapping of field-derived multiple-anthelmintic resistance in Teladorsagia circumcincta.

Choi YJ, Bisset SA, Doyle SR, Hallsworth-Pepin K, Martin J, Grant WN, Mitreva M.

PLoS Genet. 2017 Jun 23;13(6):e1006857. doi: 10.1371/journal.pgen.1006857. eCollection 2017 Jun.


You Are What You Eat: A Genomic Analysis of the Gut Microbiome of Captive and Wild Octopus vulgaris Paralarvae and Their Zooplankton Prey.

Roura Á, Doyle SR, Nande M, Strugnell JM.

Front Physiol. 2017 May 31;8:362. doi: 10.3389/fphys.2017.00362. eCollection 2017.


Significant heterogeneity in Wolbachia copy number within and between populations of Onchocerca volvulus.

Armoo S, Doyle SR, Osei-Atweneboana MY, Grant WN.

Parasit Vectors. 2017 Apr 18;10(1):188. doi: 10.1186/s13071-017-2126-4.


Substance use and treatment outcomes among Spanish-speaking Latino/as from four acculturation types.

Serafini K, Wendt DC, Ornelas IJ, Doyle SR, Donovan DM.

Psychol Addict Behav. 2017 Mar;31(2):180-188. doi: 10.1037/adb0000245. Epub 2017 Jan 9.


The genome of Onchocerca volvulus, agent of river blindness.

Cotton JA, Bennuru S, Grote A, Harsha B, Tracey A, Beech R, Doyle SR, Dunn M, Hotopp JC, Holroyd N, Kikuchi T, Lambert O, Mhashilkar A, Mutowo P, Nursimulu N, Ribeiro JM, Rogers MB, Stanley E, Swapna LS, Tsai IJ, Unnasch TR, Voronin D, Parkinson J, Nutman TB, Ghedin E, Berriman M, Lustigman S.

Nat Microbiol. 2016 Nov 21;2:16216. doi: 10.1038/nmicrobiol.2016.216.


Locating and Activating Molecular 'Time Bombs': Induction of Mycolata Prophages.

Dyson ZA, Brown TL, Farrar B, Doyle SR, Tucci J, Seviour RJ, Petrovski S.

PLoS One. 2016 Aug 3;11(8):e0159957. doi: 10.1371/journal.pone.0159957. eCollection 2016.


Predictors of 12-Step Attendance and Participation for Individuals With Stimulant Use Disorders.

Hatch-Maillette M, Wells EA, Doyle SR, Brigham GS, Daley D, DiCenzo J, Donovan D, Garrett S, Horigian VE, Jenkins L, Killeen T, Owens M, Perl HI.

J Subst Abuse Treat. 2016 Sep;68:74-82. doi: 10.1016/j.jsat.2016.06.007. Epub 2016 Jun 16.


MethPat: a tool for the analysis and visualisation of complex methylation patterns obtained by massively parallel sequencing.

Wong NC, Pope BJ, Candiloro IL, Korbie D, Trau M, Wong SQ, Mikeska T, Zhang X, Pitman M, Eggers S, Doyle SR, Dobrovic A.

BMC Bioinformatics. 2016 Feb 24;17:98. doi: 10.1186/s12859-016-0950-8.


Exemplary multiplex bisulfite amplicon data used to demonstrate the utility of Methpat.

Wong NC, Pope BJ, Candiloro I, Korbie D, Trau M, Wong SQ, Mikeska T, van Denderen BJ, Thompson EW, Eggers S, Doyle SR, Dobrovic A.

Gigascience. 2015 Nov 26;4:55. doi: 10.1186/s13742-015-0098-x. eCollection 2015.


Applying an ensemble classification tree approach to the prediction of completion of a 12-step facilitation intervention with stimulant abusers.

Doyle SR, Donovan DM.

Psychol Addict Behav. 2014 Dec;28(4):1127-43. doi: 10.1037/a0037235. Epub 2014 Aug 18.


Is level of exposure to a 12-step facilitation therapy associated with treatment outcome?

Wells EA, Donovan DM, Daley DC, Doyle SR, Brigham G, Garrett SB, Ingalsbe MH, Hatch-Maillette MA, Perl HI, Walker R.

J Subst Abuse Treat. 2014 Oct;47(4):265-74. doi: 10.1016/j.jsat.2014.06.003. Epub 2014 Jun 14.


Low-coverage MiSeq next generation sequencing reveals the mitochondrial genome of the Eastern Rock Lobster, Sagmariasus verreauxi.

Doyle SR, Griffith IS, Murphy NP, Strugnell JM.

Mitochondrial DNA. 2015;26(6):844-5. doi: 10.3109/19401736.2013.855921. Epub 2014 Jan 10.


Evidence of evolutionary constraints that influences the sequence composition and diversity of mitochondrial matrix targeting signals.

Doyle SR, Kasinadhuni NR, Chan CK, Grant WN.

PLoS One. 2013 Jun 25;8(6):e67938. doi: 10.1371/journal.pone.0067938. Print 2013.


Stimulant abuser groups to engage in 12-step: a multisite trial in the National Institute on Drug Abuse Clinical Trials Network.

Donovan DM, Daley DC, Brigham GS, Hodgkins CC, Perl HI, Garrett SB, Doyle SR, Floyd AS, Knox PC, Botero C, Kelly TM, Killeen TK, Hayes C, Kau'i Baumhofer N, Seamans C, Zammarelli L.

J Subst Abuse Treat. 2013 Jan;44(1):103-14. doi: 10.1016/j.jsat.2012.04.004. Epub 2012 May 31. Erratum in: J Subst Abuse Treat. 2015 Feb;49:71. Kau'ibaumhofer, Nicole [corrected to Kau'i Baumhofer, Nicole].


A multilevel approach to predicting community addiction treatment attitudes about contingency management.

Hartzler B, Donovan DM, Tillotson CJ, Mongoue-Tchokote S, Doyle SR, McCarty D.

J Subst Abuse Treat. 2012 Mar;42(2):213-21. doi: 10.1016/j.jsat.2011.10.012. Epub 2011 Dec 3.


Validation of a nine-dimensional measure of drinking motives for use in clinical applications: the desired effects of drinking scale.

Doyle SR, Donovan DM, Simpson TL.

Addict Behav. 2011 Nov;36(11):1052-60. doi: 10.1016/j.addbeh.2011.06.012. Epub 2011 Jul 5.


Teaching condom use skills: practice is superior to observation.

Calsyn DA, Hatch-Maillette MA, Doyle SR, Cousins S, Chen T, Godinez M.

Subst Abus. 2010 Oct;31(4):231-9. doi: 10.1080/08897077.2010.514241.


Men in methadone maintenance versus psychosocial outpatient treatment: differences in sexual risk behaviors and intervention effectiveness from a multisite HIV prevention intervention trial.

Calsyn DA, Campbell AN, Crits-Christoph P, Doyle SR, Tross S, Hatch-Maillette MA, Mandler R.

J Addict Dis. 2010 Jul;29(3):370-82. doi: 10.1080/10550887.2010.489451.


The prescribed opioids difficulties scale: a patient-centered assessment of problems and concerns.

Banta-Green CJ, Von Korff M, Sullivan MD, Merrill JO, Doyle SR, Saunders K.

Clin J Pain. 2010 Jul-Aug;26(6):489-97. doi: 10.1097/AJP.0b013e3181e103d9.


Sex under the influence of drugs or alcohol: common for men in substance abuse treatment and associated with high-risk sexual behavior.

Calsyn DA, Cousins SJ, Hatch-Maillette MA, Forcehimes A, Mandler R, Doyle SR, Woody G.

Am J Addict. 2010 Mar-Apr;19(2):119-27. doi: 10.1111/j.1521-0391.2009.00022.x.


Reducing sex under the influence of drugs or alcohol for patients in substance abuse treatment.

Calsyn DA, Crits-Christoph P, Hatch-Maillette MA, Doyle SR, Song YS, Coyer S, Pelta S.

Addiction. 2010 Jan;105(1):100-8. doi: 10.1111/j.1360-0443.2009.02812.x.


Predictors of condom use among men enrolled in drug treatment programs.

Song YS, Calsyn DA, Doyle SR, Dierst-Davies R, Chen T, Sorensen JL.

AIDS Educ Prev. 2009 Oct;21(5):460-73. doi: 10.1521/aeap.2009.21.5.460.


A validation study of the alcohol dependence scale.

Doyle SR, Donovan DM.

J Stud Alcohol Drugs. 2009 Sep;70(5):689-99.


Measurement of opioid problems among chronic pain patients in a general medical population.

Banta-Green CJ, Merrill JO, Doyle SR, Boudreau DM, Calsyn DA.

Drug Alcohol Depend. 2009 Sep 1;104(1-2):43-9. doi: 10.1016/j.drugalcdep.2009.03.022. Epub 2009 May 26.


Opioid use behaviors, mental health and pain--development of a typology of chronic pain patients.

Banta-Green CJ, Merrill JO, Doyle SR, Boudreau DM, Calsyn DA.

Drug Alcohol Depend. 2009 Sep 1;104(1-2):34-42. doi: 10.1016/j.drugalcdep.2009.03.021. Epub 2009 May 26.


Predicting treatment seekers' readiness to change their drinking behavior in the COMBINE Study.

DiClemente CC, Doyle SR, Donovan D.

Alcohol Clin Exp Res. 2009 May;33(5):879-92. doi: 10.1111/j.1530-0277.2009.00905.x. Epub 2009 Mar 11.


Motivational and skills training HIV/sexually transmitted infection sexual risk reduction groups for men.

Calsyn DA, Hatch-Maillette M, Tross S, Doyle SR, Crits-Christoph P, Song YS, Harrer JM, Lalos G, Berns SB.

J Subst Abuse Treat. 2009 Sep;37(2):138-50. doi: 10.1016/j.jsat.2008.11.008. Epub 2009 Jan 15.


Mitochondrial gene therapy: an evaluation of strategies for the treatment of mitochondrial DNA disorders.

Doyle SR, Chan CK.

Hum Gene Ther. 2008 Dec;19(12):1335-48. doi: 10.1089/hgt.2008.090. Review.


Factor structure of the Condoms Barriers Scale with a sample of men at high risk for HIV.

Doyle SR, Calsyn DA, Ball SA.

Assessment. 2009 Mar;16(1):3-15. doi: 10.1177/1073191108322259. Epub 2008 Aug 8.


The factor structure of the Alcohol Use Disorders Identification Test (AUDIT).

Doyle SR, Donovan DM, Kivlahan DR.

J Stud Alcohol Drugs. 2007 May;68(3):474-9.


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