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Items: 1 to 50 of 293

1.

Cercis: A Non-polyploid Genomic Relic Within the Generally Polyploid Legume Family.

Stai JS, Yadav A, Sinou C, Bruneau A, Doyle JJ, Fernández-Baca D, Cannon SB.

Front Plant Sci. 2019 Apr 11;10:345. doi: 10.3389/fpls.2019.00345. eCollection 2019.

2.

Economics of Child Protection: Maltreatment, Foster Care, and Intimate Partner Violence.

Doyle JJ Jr, Aizer A.

Annu Rev Econom. 2018 Aug;10:87-108. doi: 10.1146/annurev-economics-080217-053237.

3.

Acquired reversible Brown syndrome caused by focal abscess of the superior oblique muscle.

Oatts JT, Doyle JJ, Dodd MU, Mantagos IS, Dagi LR.

J AAPOS. 2019 Jun;23(3):172-174. doi: 10.1016/j.jaapos.2018.12.003. Epub 2019 Jan 30.

PMID:
30710645
4.

Relationship between cyclosporine area-under-the curve and acute graft versus host disease in pediatric patients undergoing hematopoietic stem cell transplant: A prospective, multicenter study.

Schechter T, Lewis VA, Schultz KR, Mitchell D, Chen S, Seto W, Teuffel O, Gibson P, Doyle JJ, Gassas A, Sung L, Lee Dupuis L.

Pediatr Hematol Oncol. 2018 May;35(4):288-296. doi: 10.1080/08880018.2018.1520948. Epub 2018 Dec 28.

PMID:
30592246
5.

Transposition procedures in Duane retraction syndrome.

Doyle JJ, Hunter DG.

J AAPOS. 2019 Feb;23(1):5-14. doi: 10.1016/j.jaapos.2018.10.008. Epub 2018 Dec 23. Review.

PMID:
30586616
6.

Angioid Streaks Are Not a Common Feature of Ehlers-Danlos Syndrome.

Singman EL, Doyle JJ.

JAMA Ophthalmol. 2019 Mar 1;137(3):239. doi: 10.1001/jamaophthalmol.2018.5995. No abstract available.

PMID:
30543351
7.

A Resurrected Scenario: Single Gain and Massive Loss of Nitrogen-Fixing Nodulation.

van Velzen R, Doyle JJ, Geurts R.

Trends Plant Sci. 2019 Jan;24(1):49-57. doi: 10.1016/j.tplants.2018.10.005. Epub 2018 Nov 5. Review.

PMID:
30409687
8.

Ploidy and Size at Multiple Scales in the Arabidopsis Sepal.

Robinson DO, Coate JE, Singh A, Hong L, Bush M, Doyle JJ, Roeder AHK.

Plant Cell. 2018 Oct;30(10):2308-2329. doi: 10.1105/tpc.18.00344. Epub 2018 Aug 24.

9.

Evidence-Based Valuation in Oncology:: Lessons Learned from a Case Study.

Doyle JJ, Hawryluk E, Niemira J, Wood B.

Ther Innov Regul Sci. 2019 May;53(3):403-411. doi: 10.1177/2168479018786701. Epub 2018 Jul 23.

PMID:
30037308
10.

Segmental allopolyploidy in action: Increasing diversity through polyploid hybridization and homoeologous recombination.

Leal-Bertioli SCM, Godoy IJ, Santos JF, Doyle JJ, Guimarães PM, Abernathy BL, Jackson SA, Moretzsohn MC, Bertioli DJ.

Am J Bot. 2018 Jun;105(6):1053-1066. doi: 10.1002/ajb2.1112. Epub 2018 Jul 9.

11.

Methods to Investigate the Molecular Basis of Progranulin Action on Neurons In Vivo Using Caenorhabditis elegans.

Doyle JJ, Parker JA.

Methods Mol Biol. 2018;1806:179-191. doi: 10.1007/978-1-4939-8559-3_13.

PMID:
29956277
12.

Neonatal-Onset Chronic Diarrhea Caused by Homozygous Nonsense WNT2B Mutations.

O'Connell AE, Zhou F, Shah MS, Murphy Q, Rickner H, Kelsen J, Boyle J, Doyle JJ, Gangwani B, Thiagarajah JR, Kamin DS, Goldsmith JD, Richmond C, Breault DT, Agrawal PB.

Am J Hum Genet. 2018 Jul 5;103(1):131-137. doi: 10.1016/j.ajhg.2018.05.007. Epub 2018 Jun 14.

13.

De novo transcriptome assembly of Pueraria montana var. lobata and Neustanthus phaseoloides for the development of eSSR and SNP markers: narrowing the US origin(s) of the invasive kudzu.

Haynsen MS, Vatanparast M, Mahadwar G, Zhu D, Moger-Reischer RZ, Doyle JJ, Crandall KA, Egan AN.

BMC Genomics. 2018 Jun 5;19(1):439. doi: 10.1186/s12864-018-4798-3.

14.

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis.

Griesmann M, Chang Y, Liu X, Song Y, Haberer G, Crook MB, Billault-Penneteau B, Lauressergues D, Keller J, Imanishi L, Roswanjaya YP, Kohlen W, Pujic P, Battenberg K, Alloisio N, Liang Y, Hilhorst H, Salgado MG, Hocher V, Gherbi H, Svistoonoff S, Doyle JJ, He S, Xu Y, Xu S, Qu J, Gao Q, Fang X, Fu Y, Normand P, Berry AM, Wall LG, Ané JM, Pawlowski K, Xu X, Yang H, Spannagl M, Mayer KFX, Wong GK, Parniske M, Delaux PM, Cheng S.

Science. 2018 Jul 13;361(6398). pii: eaat1743. doi: 10.1126/science.aat1743. Epub 2018 May 24.

PMID:
29794220
15.

Targeting legume loci: A comparison of three methods for target enrichment bait design in Leguminosae phylogenomics.

Vatanparast M, Powell A, Doyle JJ, Egan AN.

Appl Plant Sci. 2018 Apr 2;6(3):e1036. doi: 10.1002/aps3.1036. eCollection 2018 Mar.

16.

Acute exposure to TiO2 nanoparticles produces minimal apparent effects on oyster, Crassostrea virginica (Gmelin), hemocytes.

Doyle JJ, Ward JE, Wikfors GH.

Mar Pollut Bull. 2018 Feb;127:512-523. doi: 10.1016/j.marpolbul.2017.12.039. Epub 2017 Dec 21.

PMID:
29475691
17.

Brown Syndrome Following Upper Eyelid Ptosis Repair.

Wang Y, McCulley TJ, Doyle JJ, Chang J, Lee MS, McClelland CM.

Neuroophthalmology. 2017 Jun 12;42(1):49-51. doi: 10.1080/01658107.2017.1329321. eCollection 2018 Feb.

18.
19.

Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes.

Sun H, Wu S, Zhang G, Jiao C, Guo S, Ren Y, Zhang J, Zhang H, Gong G, Jia Z, Zhang F, Tian J, Lucas WJ, Doyle JJ, Li H, Fei Z, Xu Y.

Mol Plant. 2017 Oct 9;10(10):1293-1306. doi: 10.1016/j.molp.2017.09.003. Epub 2017 Sep 14.

20.

A Review on Current Status and Future Prospects of Winged Bean (Psophocarpus tetragonolobus) in Tropical Agriculture.

Lepcha P, Egan AN, Doyle JJ, Sathyanarayana N.

Plant Foods Hum Nutr. 2017 Sep;72(3):225-235. doi: 10.1007/s11130-017-0627-0. Review.

PMID:
28866817
21.

The burden of chemotherapy-induced nausea and vomiting in children receiving hematopoietic stem cell transplantation conditioning: a prospective study.

Flank J, Sparavalo J, Vol H, Hagen L, Stuhler R, Chong D, Courtney S, Doyle JJ, Gassas A, Schechter T, Dupuis LL.

Bone Marrow Transplant. 2017 Sep;52(9):1294-1299. doi: 10.1038/bmt.2017.112. Epub 2017 Jun 5.

PMID:
28581463
22.

Transcriptomic resources for the medicinal legume Mucuna pruriens: de novo transcriptome assembly, annotation, identification and validation of EST-SSR markers.

Sathyanarayana N, Pittala RK, Tripathi PK, Chopra R, Singh HR, Belamkar V, Bhardwaj PK, Doyle JJ, Egan AN.

BMC Genomics. 2017 May 25;18(1):409. doi: 10.1186/s12864-017-3780-9.

23.

Erratum to: Population dynamics among six major groups of the Oryza rufipogon species complex, wild relative of cultivated Asian rice.

Kim H, Jung J, Singh N, Greenberg A, Doyle JJ, Tyagi W, Chung JW, Kimball J, Hamilton RS, McCouch SR.

Rice (N Y). 2017 Dec;10(1):17. doi: 10.1186/s12284-017-0156-3. Epub 2017 Apr 26. No abstract available.

24.

Uncovering waste in US healthcare: Evidence from ambulance referral patterns.

Doyle JJ Jr, Graves JA, Gruber J.

J Health Econ. 2017 Jul;54:25-39. doi: 10.1016/j.jhealeco.2017.03.005. Epub 2017 Mar 22.

25.

Using Genomic Location and Coalescent Simulation to Investigate Gene Tree Discordance in Medicago L.

Sousa F, Bertrand YJK, Doyle JJ, Oxelman B, Pfeil BE.

Syst Biol. 2017 Nov 1;66(6):934-949. doi: 10.1093/sysbio/syx035.

PMID:
28177088
26.

Double trouble: taxonomy and definitions of polyploidy.

Doyle JJ, Sherman-Broyles S.

New Phytol. 2017 Jan;213(2):487-493. doi: 10.1111/nph.14276. Epub 2016 Nov 7. No abstract available.

27.

Chasing unicorns: Nodulation origins and the paradox of novelty.

Doyle JJ.

Am J Bot. 2016 Nov;103(11):1865-1868. Epub 2016 Oct 18. No abstract available.

28.

Enhanced rhizobial symbiotic capacity in an allopolyploid species of Glycine (Leguminosae).

Powell AF, Doyle JJ.

Am J Bot. 2016 Oct;103(10):1771-1782. Epub 2016 Aug 25.

29.

Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice.

Kim H, Jung J, Singh N, Greenberg A, Doyle JJ, Tyagi W, Chung JW, Kimball J, Hamilton RS, McCouch SR.

Rice (N Y). 2016 Dec;9(1):56. doi: 10.1186/s12284-016-0119-0. Epub 2016 Oct 12. Erratum in: Rice (N Y). 2017 Dec;10 (1):17.

30.

Expression-level support for gene dosage sensitivity in three Glycine subgenus Glycine polyploids and their diploid progenitors.

Coate JE, Song MJ, Bombarely A, Doyle JJ.

New Phytol. 2016 Dec;212(4):1083-1093. doi: 10.1111/nph.14090. Epub 2016 Jul 15.

31.

Bilateral Persistent Pupillary Membranes.

Doyle JJ, Reddy AK.

JAMA Ophthalmol. 2016 Jul 14;134(7):e160030. doi: 10.1001/jamaophthalmol.2016.0030. Epub 2016 Jul 14. No abstract available.

PMID:
27416274
32.

Transcriptome sequencing and marker development in winged bean (Psophocarpus tetragonolobus; Leguminosae).

Vatanparast M, Shetty P, Chopra R, Doyle JJ, Sathyanarayana N, Egan AN.

Sci Rep. 2016 Jun 30;6:29070. doi: 10.1038/srep29070.

33.

A deleterious gene-by-environment interaction imposed by calcium channel blockers in Marfan syndrome.

Doyle JJ, Doyle AJ, Wilson NK, Habashi JP, Bedja D, Whitworth RE, Lindsay ME, Schoenhoff F, Myers L, Huso N, Bachir S, Squires O, Rusholme B, Ehsan H, Huso D, Thomas CJ, Caulfield MJ, Van Eyk JE, Judge DP, Dietz HC; GenTAC Registry Consortium; MIBAVA Leducq Consortium.

Elife. 2015 Oct 27;4. pii: e08648. doi: 10.7554/eLife.08648.

34.

Multiple origins of BBCC allopolyploid species in the rice genus (Oryza).

Zou XH, Du YS, Tang L, Xu XW, Doyle JJ, Sang T, Ge S.

Sci Rep. 2015 Oct 13;5:14876. doi: 10.1038/srep14876.

35.

An examination of the ingestion, bioaccumulation, and depuration of titanium dioxide nanoparticles by the blue mussel (Mytilus edulis) and the eastern oyster (Crassostrea virginica).

Doyle JJ, Ward JE, Mason R.

Mar Environ Res. 2015 Sep;110:45-52. doi: 10.1016/j.marenvres.2015.07.020. Epub 2015 Jul 31.

PMID:
26263835
36.

Emergency department utilization and subsequent prescription drug overdose death.

Brady JE, DiMaggio CJ, Keyes KM, Doyle JJ, Richardson LD, Li G.

Ann Epidemiol. 2015 Aug;25(8):613-619.e2. doi: 10.1016/j.annepidem.2015.03.018. Epub 2015 Apr 2.

37.

Variation in transcriptome size: are we getting the message?

Coate JE, Doyle JJ.

Chromosoma. 2015 Mar;124(1):27-43. doi: 10.1007/s00412-014-0496-3. Epub 2014 Nov 26. Review.

PMID:
25421950
38.

Genome sequence of mungbean and insights into evolution within Vigna species.

Kang YJ, Kim SK, Kim MY, Lestari P, Kim KH, Ha BK, Jun TH, Hwang WJ, Lee T, Lee J, Shim S, Yoon MY, Jang YE, Han KS, Taeprayoon P, Yoon N, Somta P, Tanya P, Kim KS, Gwag JG, Moon JK, Lee YH, Park BS, Bombarely A, Doyle JJ, Jackson SA, Schafleitner R, Srinives P, Varshney RK, Lee SH.

Nat Commun. 2014 Nov 11;5:5443. doi: 10.1038/ncomms6443.

39.

Next Generation Sequencing Technology: Health Technology Assessment, Market Access Trends and Potential Impacts on The Future of Companion Diagnostic Testing.

Faulkner EC, Spinner DS, Ransom JF, Paul A, Chawla AS, Doyle JJ, Shaw WH, Fitzgerald JT.

Value Health. 2014 Nov;17(7):A652. doi: 10.1016/j.jval.2014.08.2374. Epub 2014 Oct 26. No abstract available.

40.

Understanding Trends In Ophthalmologist Patient Selection And Care Based On Patterns Of Billing.

Culp JL, Connelly N, Kristopik J, Doyle JJ.

Value Health. 2014 Nov;17(7):A613. doi: 10.1016/j.jval.2014.08.2152. Epub 2014 Oct 26. No abstract available.

41.

Global HTA Assessments of Ultra-Orphan Products: A Case Study Of Eculizumab (Soliris) and Iduronate-2-Sulfatase (Elaprase).

Paul A, Morawski J, Spinner DS, Doyle JJ, Faulkner EC, Ransom JF.

Value Health. 2014 Nov;17(7):A431. doi: 10.1016/j.jval.2014.08.1098. Epub 2014 Oct 26. No abstract available.

42.

Reimbursement Trends and Evidence Requirements for Ultra-Orphan Therapies Across Europe: Optimising Market Access in Increasingly Challenging Markets.

Morawski J, Paul A, Ransom JF, Spinner DS, Doyle JJ, Faulkner EC.

Value Health. 2014 Nov;17(7):A431. doi: 10.1016/j.jval.2014.08.1097. Epub 2014 Oct 26. No abstract available.

43.

Market Access of Implantable Medical Devices - Part Ii: Decision Drivers Across Global Markets.

Chawla AS, Tao C, Spinner DS, Faulkner EC, Doyle JJ.

Value Health. 2014 Nov;17(7):A388. doi: 10.1016/j.jval.2014.08.2655. Epub 2014 Oct 26. No abstract available.

44.

Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes.

Cannon SB, McKain MR, Harkess A, Nelson MN, Dash S, Deyholos MK, Peng Y, Joyce B, Stewart CN Jr, Rolf M, Kutchan T, Tan X, Chen C, Zhang Y, Carpenter E, Wong GK, Doyle JJ, Leebens-Mack J.

Mol Biol Evol. 2015 Jan;32(1):193-210. doi: 10.1093/molbev/msu296. Epub 2014 Oct 27.

45.

The wild side of a major crop: soybean's perennial cousins from Down Under.

Sherman-Broyles S, Bombarely A, Powell AF, Doyle JL, Egan AN, Coate JE, Doyle JJ.

Am J Bot. 2014 Oct;101(10):1651-65. doi: 10.3732/ajb.1400121. Epub 2014 Sep 8. Review.

46.

The legacy of diploid progenitors in allopolyploid gene expression patterns.

Buggs RJ, Wendel JF, Doyle JJ, Soltis DE, Soltis PS, Coate JE.

Philos Trans R Soc Lond B Biol Sci. 2014 Aug 5;369(1648). pii: 20130354. doi: 10.1098/rstb.2013.0354. Review.

47.

Contemporary and future studies in plant speciation, morphological/floral evolution and polyploidy: honouring the scientific contributions of Leslie D. Gottlieb to plant evolutionary biology.

Crawford DJ, Doyle JJ, Soltis DE, Soltis PS, Wendel JF.

Philos Trans R Soc Lond B Biol Sci. 2014 Aug 5;369(1648). pii: 20130341. doi: 10.1098/rstb.2013.0341. No abstract available.

48.

Mining transcriptomic data to study the origins and evolution of a plant allopolyploid complex.

Bombarely A, Coate JE, Doyle JJ.

PeerJ. 2014 May 20;2:e391. doi: 10.7717/peerj.391. eCollection 2014.

49.

Climate niche modeling in the perennial Glycine (Leguminosae) allopolyploid complex.

Harbert RS, Brown AH, Doyle JJ.

Am J Bot. 2014 Apr;101(4):710-21. doi: 10.3732/ajb.1300417. Epub 2014 Apr 3.

50.

Molecular phylogenetics of Amorpha (Fabaceae): an evaluation of monophyly, species relationships, and polyploid origins.

Straub SC, Doyle JJ.

Mol Phylogenet Evol. 2014 Jul;76:49-66. doi: 10.1016/j.ympev.2014.02.025. Epub 2014 Mar 13.

PMID:
24631856

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