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Items: 1 to 50 of 79

1.

Hard Limits and Performance Tradeoffs in a Class of Antithetic Integral Feedback Networks.

Olsman N, Baetica AA, Xiao F, Leong YP, Murray RM, Doyle JC.

Cell Syst. 2019 Jul 24;9(1):49-63.e16. doi: 10.1016/j.cels.2019.06.001. Epub 2019 Jul 3.

PMID:
31279505
2.

Architectural Principles for Characterizing the Performance of Antithetic Integral Feedback Networks.

Olsman N, Xiao F, Doyle JC.

iScience. 2019 Apr 26;14:277-291. doi: 10.1016/j.isci.2019.04.004. Epub 2019 Apr 8.

3.

Novel computational method for predicting polytherapy switching strategies to overcome tumor heterogeneity and evolution.

Jonsson VD, Blakely CM, Lin L, Asthana S, Matni N, Olivas V, Pazarentzos E, Gubens MA, Bastian BC, Taylor BS, Doyle JC, Bivona TG.

Sci Rep. 2017 Mar 13;7:44206. doi: 10.1038/srep44206.

4.

Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings.

Das A, Sampson AL, Lainscsek C, Muller L, Lin W, Doyle JC, Cash SS, Halgren E, Sejnowski TJ.

Neural Comput. 2017 Mar;29(3):603-642. doi: 10.1162/NECO_a_00936. Epub 2017 Jan 17.

5.

Even Noisy Responses Can Be Perfect If Integrated Properly.

Doyle JC.

Cell Syst. 2016 Feb 24;2(2):73-5. doi: 10.1016/j.cels.2016.02.012. Epub 2016 Feb 24.

6.

Robust efficiency and actuator saturation explain healthy heart rate control and variability.

Li N, Cruz J, Chien CS, Sojoudi S, Recht B, Stone D, Csete M, Bahmiller D, Doyle JC.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):E3476-85. doi: 10.1073/pnas.1401883111. Epub 2014 Aug 4.

7.

Architecture, constraints, and behavior.

Doyle JC, Csete M.

Proc Natl Acad Sci U S A. 2011 Sep 13;108 Suppl 3:15624-30. doi: 10.1073/pnas.1103557108. Epub 2011 Jul 25. Review.

8.

Glycolytic oscillations and limits on robust efficiency.

Chandra FA, Buzi G, Doyle JC.

Science. 2011 Jul 8;333(6039):187-92. doi: 10.1126/science.1200705.

9.

Fire in the Earth system.

Bowman DM, Balch JK, Artaxo P, Bond WJ, Carlson JM, Cochrane MA, D'Antonio CM, Defries RS, Doyle JC, Harrison SP, Johnston FH, Keeley JE, Krawchuk MA, Kull CA, Marston JB, Moritz MA, Prentice IC, Roos CI, Scott AC, Swetnam TW, van der Werf GR, Pyne SJ.

Science. 2009 Apr 24;324(5926):481-4. doi: 10.1126/science.1163886.

PMID:
19390038
10.

A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale.

Bohland JW, Wu C, Barbas H, Bokil H, Bota M, Breiter HC, Cline HT, Doyle JC, Freed PJ, Greenspan RJ, Haber SN, Hawrylycz M, Herrera DG, Hilgetag CC, Huang ZJ, Jones A, Jones EG, Karten HJ, Kleinfeld D, Kötter R, Lester HA, Lin JM, Mensh BD, Mikula S, Panksepp J, Price JL, Safdieh J, Saper CB, Schiff ND, Schmahmann JD, Stillman BW, Svoboda K, Swanson LW, Toga AW, Van Essen DC, Watson JD, Mitra PP.

PLoS Comput Biol. 2009 Mar;5(3):e1000334. doi: 10.1371/journal.pcbi.1000334. Epub 2009 Mar 27.

11.

Effect of biotin supplementation on meat quality of F1 Wagyu/Black Angus feedlot steers of known genotype.

Lawrence RJ, Doyle JC, Elliott R, Norton BW, Loxton I.

Meat Sci. 2007 Oct;77(2):228-37. doi: 10.1016/j.meatsci.2007.03.013. Epub 2007 Mar 24.

PMID:
22061595
12.

Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project.

Hucka M, Finney A, Bornstein BJ, Keating SM, Shapiro BE, Matthews J, Kovitz BL, Schilstra MJ, Funahashi A, Doyle JC, Kitano H.

Syst Biol (Stevenage). 2004 Jun;1(1):41-53. Review.

PMID:
17052114
13.

Module-based analysis of robustness tradeoffs in the heat shock response system.

Kurata H, El-Samad H, Iwasaki R, Ohtake H, Doyle JC, Grigorova I, Gross CA, Khammash M.

PLoS Comput Biol. 2006 Jul 28;2(7):e59. Epub 2006 Apr 13.

14.

The "robust yet fragile" nature of the Internet.

Doyle JC, Alderson DL, Li L, Low S, Roughan M, Shalunov S, Tanaka R, Willinger W.

Proc Natl Acad Sci U S A. 2005 Oct 11;102(41):14497-502. Epub 2005 Oct 4.

15.

Surviving heat shock: control strategies for robustness and performance.

El-Samad H, Kurata H, Doyle JC, Gross CA, Khammash M.

Proc Natl Acad Sci U S A. 2005 Feb 22;102(8):2736-41. Epub 2005 Jan 24.

16.

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.

Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, Goryanin II, Hedley WJ, Hodgman TC, Hofmeyr JH, Hunter PJ, Juty NS, Kasberger JL, Kremling A, Kummer U, Le Novère N, Loew LM, Lucio D, Mendes P, Minch E, Mjolsness ED, Nakayama Y, Nelson MR, Nielsen PF, Sakurada T, Schaff JC, Shapiro BE, Shimizu TS, Spence HD, Stelling J, Takahashi K, Tomita M, Wagner J, Wang J; SBML Forum.

Bioinformatics. 2003 Mar 1;19(4):524-31.

PMID:
12611808
17.

Reverse engineering of biological complexity.

Csete ME, Doyle JC.

Science. 2002 Mar 1;295(5560):1664-9. Review.

PMID:
11872830
18.

Oxygen-mediated regulation of skeletal muscle satellite cell proliferation and adipogenesis in culture.

Csete M, Walikonis J, Slawny N, Wei Y, Korsnes S, Doyle JC, Wold B.

J Cell Physiol. 2001 Nov;189(2):189-96.

PMID:
11598904
19.

Prescribing of ACE inhibitors for cardiovascular disorders in general practice.

Doyle JC, Mottram DR, Stubbs H.

J Clin Pharm Ther. 1998 Apr;23(2):133-6.

PMID:
9786099
20.

Transient ischaemic attacks.

Byrne E, Doyle JC.

Med J Aust. 1995 Sep 4;163(5):277-8. No abstract available.

PMID:
7565223
21.
22.
23.

Vascular trauma at a university teaching hospital.

Tobin SA, Gurry JF, Doyle JC, Connell JL, Vidovich JD.

Aust N Z J Surg. 1988 Nov;58(11):873-7.

PMID:
3250424
24.

Pre-operative aortography in the assessment of abdominal aortic aneurysms.

Gurry JF, Doyle JC, Connell JL, Vidovich JD.

Aust N Z J Surg. 1987 Nov;57(11):831-5. No abstract available.

PMID:
3439925
25.

Human neuroelectric patterns predict performance accuracy.

Gevins AS, Morgan NH, Bressler SL, Cutillo BA, White RM, Illes J, Greer DS, Doyle JC, Zeitlin GM.

Science. 1987 Jan 30;235(4788):580-5.

PMID:
3810158
26.

Improved event-related potential estimation using statistical pattern classification.

Gevins AS, Morgan NH, Bressler SL, Doyle JC, Cutillo BA.

Electroencephalogr Clin Neurophysiol. 1986 Aug;64(2):177-86.

PMID:
2424733
27.

Neurocognitive pattern analysis of a visuospatial task: rapidly-shifting foci of evoked correlations between electrodes.

Gevins AS, Doyle JC, Cutillo BA, Schaffer RE, Tannehill RS, Bressler SL.

Psychophysiology. 1985 Jan;22(1):32-43. No abstract available.

PMID:
3975318
28.

Shadows of thought: shifting lateralization of human brain electrical patterns during brief visuomotor task.

Gevins AS, Schaffer RE, Doyle JC, Cutillo BA, Tannehill RS, Bressler SL.

Science. 1983 Apr 1;220(4592):97-9.

PMID:
6828886
29.

Electrical potentials in human brain during cognition: new method reveals dynamic patterns of correlation.

Gevins AS, Doyle JC, Cutillo BA, Schaffer RE, Tannehill RS, Ghannam JH, Gilcrease VA, Yeager CL.

Science. 1981 Aug 21;213(4510):918-22.

PMID:
7256287
30.

The vascular complications of cervical rib.

Connell JL, Doyle JC, Gurry JF.

Aust N Z J Surg. 1980 Apr;50(2):125-30.

PMID:
6930228
31.

Lateralized cognitive processes and the electroencephalogram.

Gevins AS, Doyle JC, Schaffer RE, Callaway E, Yeager C.

Science. 1980 Feb 29;207(4434):1006-7. No abstract available.

PMID:
17830464
32.

EEG patterns during 'cognitive' tasks. II. Analysis of controlled tasks.

Gevins AS, Zeitlin GM, Doyle JC, Schaffer RE, Callaway E.

Electroencephalogr Clin Neurophysiol. 1979 Dec;47(6):704-10.

PMID:
91499
33.

EEG patterns during 'cognitive' tasks. I. Methodology and analysis of complex behaviors.

Gevins AS, Zeitlin GM, Yingling CD, Doyle JC, Dedon MF, Schaffer RE, Roumasset JT, Yeager CL.

Electroencephalogr Clin Neurophysiol. 1979 Dec;47(6):693-703.

PMID:
91498
34.

Electroencephalogram correlates of higher cortical functions.

Gevins AS, Zeitlin GM, Doyle JC, Yingling CD, Schaffer RE, Callaway E, Yeager CL.

Science. 1979 Feb 16;203(4381):665-8.

PMID:
760212
35.

Comments on "the clinical EEG-a search for a buried message".

Gevins AS, Doyle JC, Zeitlin GM.

IEEE Trans Biomed Eng. 1978 Nov;25(6):568-9. No abstract available.

PMID:
744608
36.

Acute mesenteric ischaemia.

Vellar ID, Doyle JC.

Aust N Z J Surg. 1977 Feb;47(1):54-61.

PMID:
266914
37.

Lateral specialization of cognitive mode: II. EEG frequency analysis.

Doyle JC, Ornstein R, Galin D.

Psychophysiology. 1974 Sep;11(5):567-78. No abstract available.

PMID:
4414066
38.

Spontaneous regression of malignant melanoma.

Doyle JC, Bennett RC, Newing RK.

Med J Aust. 1973 Sep 15;2(11):551-2. No abstract available.

PMID:
4748584
39.

Aorto-caval fistula: successful management of two cases.

Vellar ID, Doyle JC.

Aust N Z J Surg. 1972 May;41(4):335-8. No abstract available.

PMID:
4502767
40.

Gastric necrosis: a rare complication of chloral hydrate intoxication.

Veller ID, Richardson JP, Doyle JC, Keating M.

Br J Surg. 1972 Apr;59(4):317-9. No abstract available.

PMID:
5020785
41.

The Renal Handling of Dextran 40 by Surgical Patients.

Heale WF, Niall JF, Doyle JC.

Aust N Z J Surg. 1971 Nov;38(2):168-172. doi: 10.1111/j.1445-2197.1971.tb05194.x.

PMID:
29265218
42.

Axillofemoral bypass in the management of infected aortic bifurcation "dacron" graft.

Vellar ID, Doyle JC.

Aust N Z J Surg. 1970 Aug;40(1):58-60. No abstract available.

PMID:
5272608
43.

The use of the cephalic and basilic veins as peripheral vascular grafts.

Vellar ID, Doyle JC.

Aust N Z J Surg. 1970 Aug;40(1):52-7. No abstract available.

PMID:
5272607
44.

Aorto-Caval Fistula: Successful Management of Two Cases.

Vellar IDA, Doyle JC.

Aust N Z J Surg. 1969 May;41(4):335-338. doi: 10.1111/j.1445-2197.1969.tb06539.x.

PMID:
29319867
45.

The renal handling of dextran 40 by surgical patients.

Heale WF, Niall JF, Doyle JC.

Aust N Z J Surg. 1968 Nov;38(2):168-72. No abstract available.

PMID:
5247982
46.

Lord's operation for hydrocele of the tunica vaginalis testis.

Doyle JC, Rush JH.

Med J Aust. 1968 Apr 13;1(15):629-31. No abstract available.

PMID:
5653314
47.

Composite reconstruction of the femoro-popliteal artery.

Doyle JC.

Aust N Z J Surg. 1968 Feb;37(3):232-5. No abstract available.

PMID:
5239308
48.

CANCER QUACKERY: ITS CONTROL IN CALIFORNIA.

DOYLE JC, MILLER EG.

Calif Med. 1965 May;102:364-6. No abstract available.

49.

WHAT LIES AHEAD FOR MEDICINE?

DOYLE JC.

Calif Med. 1965 Apr;102:257-60. No abstract available.

50.

The Physician and the Community.

Doyle JC.

Calif Med. 1965 Mar;102(3):235. No abstract available.

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