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Pseudo-CT generation for MRI-only radiotherapy treatment planning: comparison between patch-based, atlas-based, and bulk density methods.

Largent A, Barateau A, Nunes JC, Lafond C, Greer PB, Dowling JA, Saint-Jalmes H, Acosta O, de Crevoisier R.

Int J Radiat Oncol Biol Phys. 2018 Oct 15. pii: S0360-3016(18)33839-2. doi: 10.1016/j.ijrobp.2018.10.002. [Epub ahead of print]


A Life in Vision.

Dowling JE.

Annu Rev Vis Sci. 2018 Sep 15;4:1-23. doi: 10.1146/annurev-vision-091517-034222.


An Atypical Parvovirus Drives Chronic Tubulointerstitial Nephropathy and Kidney Fibrosis.

Roediger B, Lee Q, Tikoo S, Cobbin JCA, Henderson JM, Jormakka M, O'Rourke MB, Padula MP, Pinello N, Henry M, Wynne M, Santagostino SF, Brayton CF, Rasmussen L, Lisowski L, Tay SS, Harris DC, Bertram JF, Dowling JP, Bertolino P, Lai JH, Wu W, Bachovchin WW, Wong JJ, Gorrell MD, Shaban B, Holmes EC, Jolly CJ, Monette S, Weninger W.

Cell. 2018 Oct 4;175(2):530-543.e24. doi: 10.1016/j.cell.2018.08.013. Epub 2018 Sep 13.


Comparative study of algorithms for synthetic CT generation from MRI: Consequences for MRI-guided radiation planning in the pelvic region.

Arabi H, Dowling JA, Burgos N, Han X, Greer PB, Koutsouvelis N, Zaidi H.

Med Phys. 2018 Sep 14. doi: 10.1002/mp.13187. [Epub ahead of print]


ESM-CT: a precise method for localization of DBS electrodes in CT images.

Milchenko M, Snyder AZ, Campbell MC, Dowling JL, Rich KM, Brier LM, Perlmutter JS, Norris SA.

J Neurosci Methods. 2018 Oct 1;308:366-376. doi: 10.1016/j.jneumeth.2018.09.009. Epub 2018 Sep 7.


A lightweight rapid application development framework for biomedical image analysis.

Chandra SS, Dowling JA, Engstrom C, Xia Y, Paproki A, Neubert A, Rivest-Hénault D, Salvado O, Crozier S, Fripp J.

Comput Methods Programs Biomed. 2018 Oct;164:193-205. doi: 10.1016/j.cmpb.2018.07.011. Epub 2018 Jul 26.


Implementation of a Statewide Program to Promote Safe Sleep, Breastfeeding and Tobacco Cessation to High Risk Pregnant Women.

Ahlers-Schmidt CR, Schunn C, Engel M, Dowling J, Neufeld K, Kuhlmann S.

J Community Health. 2018 Sep 5. doi: 10.1007/s10900-018-0571-4. [Epub ahead of print]


A Rare Axonal Variant of Guillain-Barré Syndrome following Elective Spinal Surgery.

Dowling JR, Dowling TJ Jr.

Case Rep Orthop. 2018 Aug 7;2018:2384969. doi: 10.1155/2018/2384969. eCollection 2018.


X-Linked Myotubular Myopathy.

Dowling JJ, Lawlor MW, Das S.

In: Adam MP, Ardinger HH, Pagon RA, Wallace SE, Bean LJH, Stephens K, Amemiya A, editors. GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993-2018.
2002 Feb 25 [updated 2018 Aug 23].


An integrated modelling methodology for estimating the prevalence of centronuclear myopathy.

Vandersmissen I, Biancalana V, Servais L, Dowling JJ, Vander Stichele G, Van Rooijen S, Thielemans L.

Neuromuscul Disord. 2018 Sep;28(9):766-777. doi: 10.1016/j.nmd.2018.06.012. Epub 2018 Jul 1. Review.


Orbital-angular-momentum-enhanced estimation of sub-Heisenberg-limited angular displacement with two-mode squeezed vacuum and parity detection.

Zhang JD, Zhang ZJ, Cen LZ, You C, Adhikari S, Dowling JP, Zhao Y.

Opt Express. 2018 Jun 25;26(13):16524-16534. doi: 10.1364/OE.26.016524.


Sub-shot-noise-limited phase estimation via SU(1,1) interferometer with thermal states.

Ma X, You C, Adhikari S, Matekole ES, Glasser RT, Lee H, Dowling JP.

Opt Express. 2018 Jul 9;26(14):18492-18504. doi: 10.1364/OE.26.018492.


Graphene-based dual-band independently tunable infrared absorber.

Sun P, You C, Mahigir A, Liu T, Xia F, Kong W, Veronis G, Dowling JP, Dong L, Yun M.

Nanoscale. 2018 Aug 23;10(33):15564-15570. doi: 10.1039/c8nr02525h.


Membrane vesicles from Pseudomonas aeruginosa activate the noncanonical inflammasome through caspase-5 in human monocytes.

Bitto NJ, Baker PJ, Dowling JK, Wray-McCann G, De Paoli A, Tran LS, Leung PL, Stacey KJ, Mansell A, Masters SL, Ferrero RL.

Immunol Cell Biol. 2018 Jul 12. doi: 10.1111/imcb.12190. [Epub ahead of print]


Toward Scalable Boson Sampling with Photon Loss.

Wang H, Li W, Jiang X, He YM, Li YH, Ding X, Chen MC, Qin J, Peng CZ, Schneider C, Kamp M, Zhang WJ, Li H, You LX, Wang Z, Dowling JP, Höfling S, Lu CY, Pan JW.

Phys Rev Lett. 2018 Jun 8;120(23):230502. doi: 10.1103/PhysRevLett.120.230502.


Concluding remarks on the Lasker/IRRF initiative on amblyopia.

Dowling JE.

Vis Neurosci. 2018 Jan;35:E019. doi: 10.1017/S0952523817000268. Review. No abstract available.


Internal dose escalation is associated with increased local control for non-small cell lung cancer (NSCLC) brain metastases treated with stereotactic radiosurgery (SRS).

Abraham C, Garsa A, Badiyan SN, Drzymala R, Yang D, DeWees T, Tsien C, Dowling JL, Rich KM, Chicoine MR, Kim AH, Leuthardt EC, Robinson C.

Adv Radiat Oncol. 2017 Nov 24;3(2):146-153. doi: 10.1016/j.adro.2017.11.003. eCollection 2018 Apr-Jun.


Estimation of Hounsfield unit conversion parameters for pelvic CT images.

Kennedy A, Dowling J, Greer PB, Ebert MA.

Australas Phys Eng Sci Med. 2018 Jun 7. doi: 10.1007/s13246-018-0651-x. [Epub ahead of print]


Myopic shift in a pseudophakic eye with an accommodating IOL following vitrectomy with gas tamponade.

Aker J, Dowling J, Halperin L.

Am J Ophthalmol Case Rep. 2018 Apr 11;10:307-309. doi: 10.1016/j.ajoc.2018.04.005. eCollection 2018 Jun.


Uniparental disomy unveils a novel recessive mutation in POMT2.

Brun BN, Willer T, Darbro BW, Gonorazky HD, Naumenko S, Dowling JJ, Campbell KP, Moore SA, Mathews KD.

Neuromuscul Disord. 2018 Jul;28(7):592-596. doi: 10.1016/j.nmd.2018.04.003. Epub 2018 Apr 10.


Radiotherapy dose-distribution to the perirectal fat space (PRS) is related to gastrointestinal control-related complications.

Gulliford SL, Ghose S, Ebert MA, Kennedy A, Dowling J, Mitra J, Joseph DJ, Denham JW.

Clin Transl Radiat Oncol. 2017 Nov 6;7:62-70. doi: 10.1016/j.ctro.2017.10.002. eCollection 2017 Dec.


Discovery of 2,6-disubstituted pyrazine derivatives as inhibitors of CK2 and PIM kinases.

Gingipalli L, Block MH, Bao L, Cooke E, Dakin LA, Denz CR, Ferguson AD, Johannes JW, Larsen NA, Lyne PD, Pontz TW, Wang T, Wu X, Wu A, Zhang HJ, Zheng X, Dowling JE, Lamb ML.

Bioorg Med Chem Lett. 2018 May 1;28(8):1336-1341. doi: 10.1016/j.bmcl.2018.03.018. Epub 2018 Mar 7.


Novel Variants in Individuals with RYR1-Related Congenital Myopathies: Genetic, Laboratory, and Clinical Findings.

Todd JJ, Razaqyar MS, Witherspoon JW, Lawal TA, Mankodi A, Chrismer IC, Allen C, Meyer MD, Kuo A, Shelton MS, Amburgey K, Niyazov D, Fequiere P, Bönnemann CG, Dowling JJ, Meilleur KG.

Front Neurol. 2018 Mar 5;9:118. doi: 10.3389/fneur.2018.00118. eCollection 2018.


The genetics of congenital myopathies.

Gonorazky HD, Bönnemann CG, Dowling JJ.

Handb Clin Neurol. 2018;148:549-564. doi: 10.1016/B978-0-444-64076-5.00036-3. Review.


Kynurenine pathway metabolism and the neurobiology of treatment-resistant depression: Comparison of multiple ketamine infusions and electroconvulsive therapy.

Allen AP, Naughton M, Dowling J, Walsh A, O'Shea R, Shorten G, Scott L, McLoughlin DM, Cryan JF, Clarke G, Dinan TG.

J Psychiatr Res. 2018 May;100:24-32. doi: 10.1016/j.jpsychires.2018.02.011. Epub 2018 Feb 10.


Determining direct binders of the Androgen Receptor using a high-throughput Cellular Thermal Shift Assay.

Shaw J, Leveridge M, Norling C, Karén J, Molina DM, O'Neill D, Dowling JE, Davey P, Cowan S, Dabrowski M, Main M, Gianni D.

Sci Rep. 2018 Jan 9;8(1):163. doi: 10.1038/s41598-017-18650-x.


Correlations between contouring similarity metrics and simulated treatment outcome for prostate radiotherapy.

Roach D, Jameson MG, Dowling JA, Ebert MA, Greer PB, Kennedy AM, Watt S, Holloway LC.

Phys Med Biol. 2018 Jan 22;63(3):035001. doi: 10.1088/1361-6560/aaa50c.


An unusual onset of agminated Spitz naevi in an adult patient.

Adler NR, Kelly JW, Dowling JP, Saunders H, Mar VJ.

Clin Exp Dermatol. 2018 Apr;43(3):363-365. doi: 10.1111/ced.13343. Epub 2017 Dec 20. No abstract available.


Distant intracranial failure in melanoma brain metastases treated with stereotactic radiosurgery in the era of immunotherapy and targeted agents.

Acharya S, Mahmood M, Mullen D, Yang D, Tsien CI, Huang J, Perkins SM, Rich K, Chicoine M, Leuthardt E, Dowling J, Dunn G, Keller J, Robinson CG, Abraham C.

Adv Radiat Oncol. 2017 Aug 12;2(4):572-580. doi: 10.1016/j.adro.2017.07.003. eCollection 2017 Oct-Dec.


Discovery and Optimization of Pyrrolopyrimidine Inhibitors of Interleukin-1 Receptor Associated Kinase 4 (IRAK4) for the Treatment of Mutant MYD88L265P Diffuse Large B-Cell Lymphoma.

Scott JS, Degorce SL, Anjum R, Culshaw J, Davies RDM, Davies NL, Dillman KS, Dowling JE, Drew L, Ferguson AD, Groombridge SD, Halsall CT, Hudson JA, Lamont S, Lindsay NA, Marden SK, Mayo MF, Pease JE, Perkins DR, Pink JH, Robb GR, Rosen A, Shen M, McWhirter C, Wu D.

J Med Chem. 2017 Dec 28;60(24):10071-10091. doi: 10.1021/acs.jmedchem.7b01290. Epub 2017 Dec 11.


Building Bridges through Science.

Lissek T, Adams M, Adelman J, Ahissar E, Akaaboune M, Akil H, al'Absi M, Arain F, Arango-Lasprilla JC, Atasoy D, Avila J, Badawi A, Bading H, Baig AM, Baleriola J, Belmonte C, Bertocchi I, Betz H, Blakemore C, Blanke O, Boehm-Sturm P, Bonhoeffer T, Bonifazi P, Brose N, Campolongo P, Celikel T, Chang CC, Chang TY, Citri A, Cline HT, Cortes JM, Cullen K, Dean K, Delgado-Garcia JM, Desroches M, Disterhoft JF, Dowling JE, Draguhn A, El-Khamisy SF, El Manira A, Enam SA, Encinas JM, Erramuzpe A, Esteban JA, Fariñas I, Fischer E, Fukunaga I, Gabilondo I, Ganten D, Gidon A, Gomez-Esteban JC, Greengard P, Grinevich V, Gruart A, Guillemin R, Hariri AR, Hassan B, Häusser M, Hayashi Y, Hussain NK, Jabbar AA, Jaber M, Jahn R, Janahi EM, Kabbaj M, Kettenmann H, Kindt M, Knafo S, Köhr G, Komai S, Krugers H, Kuhn B, Ghazal NL, Larkum ME, London M, Lutz B, Matute C, Martinez-Millan L, Maroun M, McGaugh J, Moustafa AA, Nasim A, Nave KA, Neher E, Nikolich K, Outeiro T, Palmer LM, Penagarikano O, Perez-Otano I, Pfaff DW, Poucet B, Rahman AU, Ramos-Cabrer P, Rashidy-Pour A, Roberts RJ, Rodrigues S, Sanes JR, Schaefer AT, Segal M, Segev I, Shafqat S, Siddiqui NA, Soreq H, Soriano-García E, Spanagel R, Sprengel R, Stuart G, Südhof TC, Tønnesen J, Treviño M, Uthman BM, Venter JC, Verkhratsky A, Weiss C, Wiesel TN, Yaksi E, Yizhar O, Young LJ, Young P, Zawia NH, Zugaza JL, Hasan MT.

Neuron. 2017 Nov 15;96(4):730-735. doi: 10.1016/j.neuron.2017.09.028.


A study of the reactivity of S(VI)-F containing warheads with nucleophilic amino-acid side chains under physiological conditions.

Mukherjee H, Debreczeni J, Breed J, Tentarelli S, Aquila B, Dowling JE, Whitty A, Grimster NP.

Org Biomol Chem. 2017 Nov 22;15(45):9685-9695. doi: 10.1039/c7ob02028g.


PURA syndrome: clinical delineation and genotype-phenotype study in 32 individuals with review of published literature.

Reijnders MRF, Janowski R, Alvi M, Self JE, van Essen TJ, Vreeburg M, Rouhl RPW, Stevens SJC, Stegmann APA, Schieving J, Pfundt R, van Dijk K, Smeets E, Stumpel CTRM, Bok LA, Cobben JM, Engelen M, Mansour S, Whiteford M, Chandler KE, Douzgou S, Cooper NS, Tan EC, Foo R, Lai AHM, Rankin J, Green A, Lönnqvist T, Isohanni P, Williams S, Ruhoy I, Carvalho KS, Dowling JJ, Lev DL, Sterbova K, Lassuthova P, Neupauerová J, Waugh JL, Keros S, Clayton-Smith J, Smithson SF, Brunner HG, van Hoeckel C, Anderson M, Clowes VE, Siu VM, Ddd Study T, Selber P, Leventer RJ, Nellaker C, Niessing D, Hunt D, Baralle D.

J Med Genet. 2018 Feb;55(2):104-113. doi: 10.1136/jmedgenet-2017-104946. Epub 2017 Nov 2.


Intensity-based dual model method for generation of synthetic CT images from standard T2-weighted MR images - Generalized technique for four different MR scanners.

Koivula L, Kapanen M, Seppälä T, Collan J, Dowling JA, Greer PB, Gustafsson C, Gunnlaugsson A, Olsson LE, Wee L, Korhonen J.

Radiother Oncol. 2017 Dec;125(3):411-419. doi: 10.1016/j.radonc.2017.10.011. Epub 2017 Oct 30.


Investigating the generalisation of an atlas-based synthetic-CT algorithm to another centre and MR scanner for prostate MR-only radiotherapy.

Wyatt JJ, Dowling JA, Kelly CG, McKenna J, Johnstone E, Speight R, Henry A, Greer PB, McCallum HM.

Phys Med Biol. 2017 Nov 21;62(24):N548-N560. doi: 10.1088/1361-6560/aa9676.


Characterization of the first knock-out aldh7a1 zebrafish model for pyridoxine-dependent epilepsy using CRISPR-Cas9 technology.

Zabinyakov N, Bullivant G, Cao F, Fernandez Ojeda M, Jia ZP, Wen XY, Dowling JJ, Salomons GS, Mercimek-Andrews S.

PLoS One. 2017 Oct 20;12(10):e0186645. doi: 10.1371/journal.pone.0186645. eCollection 2017.


Regression and statistical shape model based substitute CT generation for MRI alone external beam radiation therapy from standard clinical MRI sequences.

Ghose S, Greer PB, Sun J, Pichler P, Rivest-Henault D, Mitra J, Richardson H, Wratten C, Martin J, Arm J, Best L, Dowling JA.

Phys Med Biol. 2017 Oct 27;62(22):8566-8580. doi: 10.1088/1361-6560/aa9104.


Multiphoton Interference in Quantum Fourier Transform Circuits and Applications to Quantum Metrology.

Su ZE, Li Y, Rohde PP, Huang HL, Wang XL, Li L, Liu NL, Dowling JP, Lu CY, Pan JW.

Phys Rev Lett. 2017 Aug 25;119(8):080502. doi: 10.1103/PhysRevLett.119.080502. Epub 2017 Aug 24.


The unregulated use of melanotan-II is of public health interest to Australian dermatologists.

Adler NR, Dowling JP, Pan Y.

Australas J Dermatol. 2017 Nov;58(4):327-329. doi: 10.1111/ajd.12711. Epub 2017 Sep 14. No abstract available.


Malignant Hyperthermia Susceptibility and Related Diseases.

Litman RS, Griggs SM, Dowling JJ, Riazi S.

Anesthesiology. 2018 Jan;128(1):159-167. doi: 10.1097/ALN.0000000000001877. Review. No abstract available.


Treating pediatric neuromuscular disorders: The future is now.

Dowling JJ, D Gonorazky H, Cohn RD, Campbell C.

Am J Med Genet A. 2018 Apr;176(4):804-841. doi: 10.1002/ajmg.a.38418. Epub 2017 Sep 10. Review.


A novel intronic mutation in MTM1 detected by RNA analysis in a case of X-linked myotubular myopathy.

Al-Hashim A, Gonorazky HD, Amburgey K, Das S, Dowling JJ.

Neurol Genet. 2017 Aug 24;3(5):e182. doi: 10.1212/NXG.0000000000000182. eCollection 2017 Oct. No abstract available.


A natural history study of X-linked myotubular myopathy.

Amburgey K, Tsuchiya E, de Chastonay S, Glueck M, Alverez R, Nguyen CT, Rutkowski A, Hornyak J, Beggs AH, Dowling JJ.

Neurology. 2017 Sep 26;89(13):1355-1364. doi: 10.1212/WNL.0000000000004415. Epub 2017 Aug 25.


Postoperative seizure freedom does not normalize altered connectivity in temporal lobe epilepsy.

Maccotta L, Lopez MA, Adeyemo B, Ances BM, Day BK, Eisenman LN, Dowling JL, Leuthardt EC, Schlaggar BL, Hogan RE.

Epilepsia. 2017 Nov;58(11):1842-1851. doi: 10.1111/epi.13867. Epub 2017 Aug 3.


Improved diagnostic yield compared with targeted gene sequencing panels suggests a role for whole-genome sequencing as a first-tier genetic test.

Lionel AC, Costain G, Monfared N, Walker S, Reuter MS, Hosseini SM, Thiruvahindrapuram B, Merico D, Jobling R, Nalpathamkalam T, Pellecchia G, Sung WWL, Wang Z, Bikangaga P, Boelman C, Carter MT, Cordeiro D, Cytrynbaum C, Dell SD, Dhir P, Dowling JJ, Heon E, Hewson S, Hiraki L, Inbar-Feigenberg M, Klatt R, Kronick J, Laxer RM, Licht C, MacDonald H, Mercimek-Andrews S, Mendoza-Londono R, Piscione T, Schneider R, Schulze A, Silverman E, Siriwardena K, Snead OC, Sondheimer N, Sutherland J, Vincent A, Wasserman JD, Weksberg R, Shuman C, Carew C, Szego MJ, Hayeems RZ, Basran R, Stavropoulos DJ, Ray PN, Bowdin S, Meyn MS, Cohn RD, Scherer SW, Marshall CR.

Genet Med. 2018 Apr;20(4):435-443. doi: 10.1038/gim.2017.119. Epub 2017 Aug 3.


Subacute demyelinating peripheral neuropathy as a novel presentation of late infantile metachromatic leukodystrophy.

Gonorazky HD, Amburgey K, Yoon G, Vajsar J, Widjaja E, Dowling JJ.

Muscle Nerve. 2017 Nov;56(5):E41-E44. doi: 10.1002/mus.25737. Epub 2017 Jul 18. No abstract available.


E-Science technologies in a workflow for personalized medicine using cancer screening as a case study.

Spjuth O, Karlsson A, Clements M, Humphreys K, Ivansson E, Dowling J, Eklund M, Jauhiainen A, Czene K, Grönberg H, Sparén P, Wiklund F, Cheddad A, Pálsdóttir Þ, Rantalainen M, Abrahamsson L, Laure E, Litton JE, Palmgren J.

J Am Med Inform Assoc. 2017 Sep 1;24(5):950-957. doi: 10.1093/jamia/ocx038.


Improving genetic diagnosis in Mendelian disease with transcriptome sequencing.

Cummings BB, Marshall JL, Tukiainen T, Lek M, Donkervoort S, Foley AR, Bolduc V, Waddell LB, Sandaradura SA, O'Grady GL, Estrella E, Reddy HM, Zhao F, Weisburd B, Karczewski KJ, O'Donnell-Luria AH, Birnbaum D, Sarkozy A, Hu Y, Gonorazky H, Claeys K, Joshi H, Bournazos A, Oates EC, Ghaoui R, Davis MR, Laing NG, Topf A; Genotype-Tissue Expression Consortium, Kang PB, Beggs AH, North KN, Straub V, Dowling JJ, Muntoni F, Clarke NF, Cooper ST, Bönnemann CG, MacArthur DG.

Sci Transl Med. 2017 Apr 19;9(386). pii: eaal5209. doi: 10.1126/scitranslmed.aal5209.


Target Deconvolution Efforts on Wnt Pathway Screen Reveal Dual Modulation of Oxidative Phosphorylation and SERCA2.

Casás-Selves M, Zhang AX, Dowling JE, Hallén S, Kawatkar A, Pace NJ, Denz CR, Pontz T, Garahdaghi F, Cao Q, Sabirsh A, Thakur K, O'Connell N, Hu J, Cornella-Taracido I, Weerapana E, Zinda M, Goodnow RA Jr, Castaldi MP.

ChemMedChem. 2017 Jun 21;12(12):917-924. doi: 10.1002/cmdc.201700028. Epub 2017 Apr 26.


Malignant hyperthermia susceptibility in patients with exertional rhabdomyolysis: a retrospective cohort study and updated systematic review.

Kraeva N, Sapa A, Dowling JJ, Riazi S.

Can J Anaesth. 2017 Jul;64(7):736-743. doi: 10.1007/s12630-017-0865-5. Epub 2017 Mar 21. Review.


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