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Items: 1 to 50 of 117

1.

Correction to "Structural Insights into the Distinct Binding Mode of Cyclic Di-AMP with SaCpaA_RCK".

Chin KH, Liang JM, Yang JG, Shih MS, Tu ZL, Wang YC, Sun XH, Hu NJ, Liang ZX, Dow JM, Ryan RP, Chou SH.

Biochemistry. 2018 Jul 17;57(28):4236. doi: 10.1021/acs.biochem.8b00686. Epub 2018 Jul 9. No abstract available.

PMID:
29984582
2.

Retraction for Fouhy et al., "Diffusible Signal Factor-Dependent Cell-Cell Signaling and Virulence in the Nosocomial Pathogen Stenotrophomonas maltophilia".

Fouhy Y, Scanlon K, Schouest K, Spillane C, Crossman L, Avison MB, Ryan RP, Dow JM.

J Bacteriol. 2018 May 24;200(12). pii: e00235-18. doi: 10.1128/JB.00235-18. Print 2018 Jun 15. No abstract available.

3.

Probing the Role of Cyclic di-GMP Signaling Systems in Disease Using Chinese Radish.

An SQ, Tang JL, Dow JM.

Methods Mol Biol. 2017;1657:205-212. doi: 10.1007/978-1-4939-7240-1_16.

PMID:
28889296
4.

Retraction for McCarthy et al., "The Ax21 Protein Is a Cell-Cell Signal That Regulates Virulence in the Nosocomial Pathogen Stenotrophomonas maltophilia".

McCarthy Y, Dow JM, Ryan RP.

J Bacteriol. 2017 Apr 25;199(10). pii: e00156-17. doi: 10.1128/JB.00156-17. Print 2017 May 15. No abstract available.

5.

Progress in Understanding the Molecular Basis Underlying Functional Diversification of Cyclic Dinucleotide Turnover Proteins.

Römling U, Liang ZX, Dow JM.

J Bacteriol. 2017 Feb 14;199(5). pii: e00790-16. doi: 10.1128/JB.00790-16. Print 2017 Mar 1. Review.

6.

Diffusible signal factor-dependent quorum sensing in pathogenic bacteria and its exploitation for disease control.

Dow JM.

J Appl Microbiol. 2017 Jan;122(1):2-11. doi: 10.1111/jam.13307. Epub 2016 Nov 10. Review.

PMID:
27684652
7.

A systematic analysis of the role of GGDEF-EAL domain proteins in virulence and motility in Xanthomonas oryzae pv. oryzicola.

Wei C, Jiang W, Zhao M, Ling J, Zeng X, Deng J, Jin D, Dow JM, Sun W.

Sci Rep. 2016 Apr 7;6:23769. doi: 10.1038/srep23769.

8.

Functional and genomic insights into the pathogenesis of Burkholderia species to rice.

Naughton LM, An SQ, Hwang I, Chou SH, He YQ, Tang JL, Ryan RP, Dow JM.

Environ Microbiol. 2016 Mar;18(3):780-90. doi: 10.1111/1462-2920.13189. Epub 2016 Jan 21. Review.

PMID:
26690879
9.

The DSF Family of Cell-Cell Signals: An Expanding Class of Bacterial Virulence Regulators.

Ryan RP, An SQ, Allan JH, McCarthy Y, Dow JM.

PLoS Pathog. 2015 Jul 16;11(7):e1004986. doi: 10.1371/journal.ppat.1004986. eCollection 2015 Jul. Review.

10.

Structural Insights into the Distinct Binding Mode of Cyclic Di-AMP with SaCpaA_RCK.

Chin KH, Liang JM, Yang JG, Shih MS, Tu ZL, Wang YC, Sun XH, Hu NJ, Liang ZX, Dow JM, Ryan RP, Chou SH.

Biochemistry. 2015 Aug 11;54(31):4936-51. doi: 10.1021/acs.biochem.5b00633. Epub 2015 Jul 27. Erratum in: Biochemistry. 2018 Jul 17;57(28):4236.

PMID:
26171638
11.

Haemophilus influenzae responds to glucocorticoids used in asthma therapy by modulation of biofilm formation and antibiotic resistance.

Earl CS, Keong TW, An SQ, Murdoch S, McCarthy Y, Garmendia J, Ward J, Dow JM, Yang L, O'Toole GA, Ryan RP.

EMBO Mol Med. 2015 Aug;7(8):1018-33. doi: 10.15252/emmm.201505088. Retraction in: EMBO Mol Med. 2018 Mar 12;:.

12.

XbmR, a new transcription factor involved in the regulation of chemotaxis, biofilm formation and virulence in Xanthomonas citri subsp. citri.

Yaryura PM, Conforte VP, Malamud F, Roeschlin R, de Pino V, Castagnaro AP, McCarthy Y, Dow JM, Marano MR, Vojnov AA.

Environ Microbiol. 2015 Nov;17(11):4164-76. doi: 10.1111/1462-2920.12684. Epub 2014 Dec 17.

PMID:
25346091
13.

Novel cyclic di-GMP effectors of the YajQ protein family control bacterial virulence.

An SQ, Caly DL, McCarthy Y, Murdoch SL, Ward J, Febrer M, Dow JM, Ryan RP.

PLoS Pathog. 2014 Oct 16;10(10):e1004429. doi: 10.1371/journal.ppat.1004429. eCollection 2014 Oct.

14.

Targeting cyclic di-GMP signalling: a strategy to control biofilm formation?

Caly DL, Bellini D, Walsh MA, Dow JM, Ryan RP.

Curr Pharm Des. 2015;21(1):12-24. Review.

PMID:
25189859
15.

The PAS domain-containing histidine kinase RpfS is a second sensor for the diffusible signal factor of Xanthomonas campestris.

An SQ, Allan JH, McCarthy Y, Febrer M, Dow JM, Ryan RP.

Mol Microbiol. 2014 May;92(3):586-97. doi: 10.1111/mmi.12577. Epub 2014 Apr 2.

16.

Microbiota and metabolite profiling reveal specific alterations in bacterial community structure and environment in the cystic fibrosis airway during exacerbation.

Twomey KB, Alston M, An SQ, O'Connell OJ, McCarthy Y, Swarbreck D, Febrer M, Dow JM, Plant BJ, Ryan RP.

PLoS One. 2013 Dec 17;8(12):e82432. doi: 10.1371/journal.pone.0082432. eCollection 2013.

17.

Characterization of a periplasmic nitrate reductase in complex with its biosynthetic chaperone.

Dow JM, Grahl S, Ward R, Evans R, Byron O, Norman DG, Palmer T, Sargent F.

FEBS J. 2014 Jan;281(1):246-60. doi: 10.1111/febs.12592. Epub 2013 Dec 9.

18.

Crystal structure of an HD-GYP domain cyclic-di-GMP phosphodiesterase reveals an enzyme with a novel trinuclear catalytic iron centre.

Bellini D, Caly DL, McCarthy Y, Bumann M, An SQ, Dow JM, Ryan RP, Walsh MA.

Mol Microbiol. 2014 Jan;91(1):26-38. doi: 10.1111/mmi.12447. Epub 2013 Nov 24.

19.

Proteomics analysis of the regulatory role of Rpf/DSF cell-to-cell signaling system in the virulence of Xanthomonas campestris.

O'Connell A, An SQ, McCarthy Y, Schulte F, Niehaus K, He YQ, Tang JL, Ryan RP, Dow JM.

Mol Plant Microbe Interact. 2013 Oct;26(10):1131-7. doi: 10.1094/MPMI-05-13-0155-R. Erratum in: Mol Plant Microbe Interact. 2017 Feb;30(2):cx.

20.

High-resolution transcriptional analysis of the regulatory influence of cell-to-cell signalling reveals novel genes that contribute to Xanthomonas phytopathogenesis.

An SQ, Febrer M, McCarthy Y, Tang DJ, Clissold L, Kaithakottil G, Swarbreck D, Tang JL, Rogers J, Dow JM, Ryan RP.

Mol Microbiol. 2013 Jun;88(6):1058-69. doi: 10.1111/mmi.12229. Epub 2013 Apr 26. Erratum in: Mol Microbiol. 2017 May;104(4):693-694.

21.

The HD-GYP domain protein RpfG of Xanthomonas oryzae pv. oryzicola regulates synthesis of extracellular polysaccharides that contribute to biofilm formation and virulence on rice.

Zhang Y, Wei C, Jiang W, Wang L, Li C, Wang Y, Dow JM, Sun W.

PLoS One. 2013;8(3):e59428. doi: 10.1371/journal.pone.0059428. Epub 2013 Mar 27.

22.

The RpfCG two-component system negatively regulates the colonization of sugar cane stalks by Xanthomonas albilineans.

Rott P, Fleites LA, Mensi I, Sheppard L, Daugrois JH, Dow JM, Gabriel DW.

Microbiology. 2013 Jun;159(Pt 6):1149-59. doi: 10.1099/mic.0.065748-0. Epub 2013 Mar 28.

PMID:
23538716
23.

Characterization of a pre-export enzyme-chaperone complex on the twin-arginine transport pathway.

Dow JM, Gabel F, Sargent F, Palmer T.

Biochem J. 2013 May 15;452(1):57-66. doi: 10.1042/BJ20121832.

24.

RsmA regulates biofilm formation in Xanthomonas campestris through a regulatory network involving cyclic di-GMP and the Clp transcription factor.

Lu XH, An SQ, Tang DJ, McCarthy Y, Tang JL, Dow JM, Ryan RP.

PLoS One. 2012;7(12):e52646. doi: 10.1371/journal.pone.0052646. Epub 2012 Dec 21.

25.

Dynamic complex formation between HD-GYP, GGDEF and PilZ domain proteins regulates motility in Xanthomonas campestris.

Ryan RP, McCarthy Y, Kiely PA, O'Connor R, Farah CS, Armitage JP, Dow JM.

Mol Microbiol. 2012 Nov;86(3):557-67. doi: 10.1111/mmi.12000. Epub 2012 Aug 31. Retraction in: Mol Microbiol. 2017 May;104(3):533.

26.

An orphan chemotaxis sensor regulates virulence and antibiotic tolerance in the human pathogen Pseudomonas aeruginosa.

McLaughlin HP, Caly DL, McCarthy Y, Ryan RP, Dow JM.

PLoS One. 2012;7(8):e42205. doi: 10.1371/journal.pone.0042205. Epub 2012 Aug 1.

27.

When the PilZ don't work: effectors for cyclic di-GMP action in bacteria.

Ryan RP, Tolker-Nielsen T, Dow JM.

Trends Microbiol. 2012 May;20(5):235-42. doi: 10.1016/j.tim.2012.02.008. Epub 2012 Mar 21. Review.

PMID:
22444828
28.

Bacterial cis-2-unsaturated fatty acids found in the cystic fibrosis airway modulate virulence and persistence of Pseudomonas aeruginosa.

Twomey KB, O'Connell OJ, McCarthy Y, Dow JM, O'Toole GA, Plant BJ, Ryan RP.

ISME J. 2012 May;6(5):939-50. doi: 10.1038/ismej.2011.167. Epub 2011 Dec 1.

29.

The Ax21 protein is a cell-cell signal that regulates virulence in the nosocomial pathogen Stenotrophomonas maltophilia.

McCarthy Y, Dow JM, Ryan RP.

J Bacteriol. 2011 Nov;193(22):6375-8. doi: 10.1128/JB.05949-11. Epub 2011 Sep 9. Retraction in: J Bacteriol. 2017 Apr 25;199(10 ):.

30.

The CRP/FNR family protein Bcam1349 is a c-di-GMP effector that regulates biofilm formation in the respiratory pathogen Burkholderia cenocepacia.

Fazli M, O'Connell A, Nilsson M, Niehaus K, Dow JM, Givskov M, Ryan RP, Tolker-Nielsen T.

Mol Microbiol. 2011 Oct;82(2):327-41. doi: 10.1111/j.1365-2958.2011.07814.x. Epub 2011 Sep 7.

31.

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL.

J Bacteriol. 2011 Oct;193(19):5450-64. doi: 10.1128/JB.05262-11. Epub 2011 Jul 22.

32.

In vitro analyses are not reliable predictors of the plant growth promotion capability of bacteria; a Pseudomonas fluorescens strain that promotes the growth and yield of wheat.

Smyth EM, McCarthy J, Nevin R, Khan MR, Dow JM, O'Gara F, Doohan FM.

J Appl Microbiol. 2011 Sep;111(3):683-92. doi: 10.1111/j.1365-2672.2011.05079.x. Epub 2011 Jul 12.

33.

Self-consciousness and concepts.

Dow JM.

Conscious Cogn. 2012 Jun;21(2):723-4; author reply 725-6. doi: 10.1016/j.concog.2011.05.004. Epub 2011 May 31. No abstract available.

PMID:
21622010
34.

Pathogenomics of Xanthomonas: understanding bacterium-plant interactions.

Ryan RP, Vorhölter FJ, Potnis N, Jones JB, Van Sluys MA, Bogdanove AJ, Dow JM.

Nat Rev Microbiol. 2011 May;9(5):344-55. doi: 10.1038/nrmicro2558. Epub 2011 Apr 11. Review.

PMID:
21478901
35.

Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.

Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB.

BMC Genomics. 2011 Mar 11;12:146. doi: 10.1186/1471-2164-12-146.

36.

Communication with a growing family: diffusible signal factor (DSF) signaling in bacteria.

Ryan RP, Dow JM.

Trends Microbiol. 2011 Mar;19(3):145-52. doi: 10.1016/j.tim.2010.12.003. Epub 2011 Jan 10.

PMID:
21227698
37.
38.

A sensor kinase recognizing the cell-cell signal BDSF (cis-2-dodecenoic acid) regulates virulence in Burkholderia cenocepacia.

McCarthy Y, Yang L, Twomey KB, Sass A, Tolker-Nielsen T, Mahenthiralingam E, Dow JM, Ryan RP.

Mol Microbiol. 2010 Sep;77(5):1220-36. doi: 10.1111/j.1365-2958.2010.07285.x.

39.

Lipopolysaccharides and plant innate immunity.

Erbs G, Molinaro A, Dow JM, Newman MA.

Subcell Biochem. 2010;53:387-403. doi: 10.1007/978-90-481-9078-2_17.

PMID:
20593276
40.

Bacteria causing important diseases of citrus utilise distinct modes of pathogenesis to attack a common host.

Vojnov AA, do Amaral AM, Dow JM, Castagnaro AP, Marano MR.

Appl Microbiol Biotechnol. 2010 Jun;87(2):467-77. doi: 10.1007/s00253-010-2631-2. Epub 2010 May 7. Review.

PMID:
20449739
41.

Cell-cell signal-dependent dynamic interactions between HD-GYP and GGDEF domain proteins mediate virulence in Xanthomonas campestris.

Ryan RP, McCarthy Y, Andrade M, Farah CS, Armitage JP, Dow JM.

Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):5989-94. doi: 10.1073/pnas.0912839107. Epub 2010 Mar 15. Erratum in: Proc Natl Acad Sci U S A. 2017 Feb 14;114(7):E1303.

42.

Glyco-conjugates as elicitors or suppressors of plant innate immunity.

Silipo A, Erbs G, Shinya T, Dow JM, Parrilli M, Lanzetta R, Shibuya N, Newman MA, Molinaro A.

Glycobiology. 2010 Jan;20(4):406-19. doi: 10.1093/glycob/cwp201. Epub 2009 Dec 17. Review.

PMID:
20018942
43.

The cAMP receptor-like protein CLP is a novel c-di-GMP receptor linking cell-cell signaling to virulence gene expression in Xanthomonas campestris.

Chin KH, Lee YC, Tu ZL, Chen CH, Tseng YH, Yang JM, Ryan RP, McCarthy Y, Dow JM, Wang AH, Chou SH.

J Mol Biol. 2010 Feb 26;396(3):646-62. doi: 10.1016/j.jmb.2009.11.076. Epub 2009 Dec 18.

PMID:
20004667
44.

Passing GO (gene ontology) in plant pathogen biology: a report from the Xanthomonas Genomics Conference.

Ryan RP, Koebnik R, Szurek B, Boureau T, Bernal A, Bogdanove A, Dow JM.

Cell Microbiol. 2009 Dec;11(12):1689-96. doi: 10.1111/j.1462-5822.2009.01387.x. Epub 2009 Oct 5.

PMID:
19804485
45.

The versatility and adaptation of bacteria from the genus Stenotrophomonas.

Ryan RP, Monchy S, Cardinale M, Taghavi S, Crossman L, Avison MB, Berg G, van der Lelie D, Dow JM.

Nat Rev Microbiol. 2009 Jul;7(7):514-25. doi: 10.1038/nrmicro2163. Review.

PMID:
19528958
46.

Intraspecies signaling involving the diffusible signal factor BDSF (cis-2-dodecenoic acid) influences virulence in Burkholderia cenocepacia.

Ryan RP, McCarthy Y, Watt SA, Niehaus K, Dow JM.

J Bacteriol. 2009 Aug;191(15):5013-9. doi: 10.1128/JB.00473-09. Epub 2009 May 29.

47.

The xrvA gene of Xanthomonas oryzae pv. oryzae, encoding an H-NS-like protein, regulates virulence in rice.

Feng JX, Song ZZ, Duan CJ, Zhao S, Wu YQ, Wang C, Dow JM, Tang JL.

Microbiology. 2009 Sep;155(Pt 9):3033-44. doi: 10.1099/mic.0.028910-0. Epub 2009 May 7.

PMID:
19423625
48.

HD-GYP domain proteins regulate biofilm formation and virulence in Pseudomonas aeruginosa.

Ryan RP, Lucey J, O'Donovan K, McCarthy Y, Yang L, Tolker-Nielsen T, Dow JM.

Environ Microbiol. 2009 May;11(5):1126-36. doi: 10.1111/j.1462-2920.2008.01842.x. Epub 2008 Dec 17. Erratum in: Environ Microbiol. 2016 Feb;18(2):736.

PMID:
19170727
49.

Acquisition and evolution of plant pathogenesis-associated gene clusters and candidate determinants of tissue-specificity in xanthomonas.

Lu H, Patil P, Van Sluys MA, White FF, Ryan RP, Dow JM, Rabinowicz P, Salzberg SL, Leach JE, Sonti R, Brendel V, Bogdanove AJ.

PLoS One. 2008;3(11):e3828. doi: 10.1371/journal.pone.0003828. Epub 2008 Nov 27.

50.

The role of PilZ domain proteins in the virulence of Xanthomonas campestris pv. campestris.

McCarthy Y, Ryan RP, O'Donovan K, He YQ, Jiang BL, Feng JX, Tang JL, Dow JM.

Mol Plant Pathol. 2008 Nov;9(6):819-24. doi: 10.1111/j.1364-3703.2008.00495.x.

PMID:
19019010

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