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Items: 1 to 50 of 57

1.

Integration of genetic and metabolic features related to sialic acid metabolism distinguishes human breast cell subtypes.

Saeui CT, Nairn AV, Galizzi M, Douville C, Gowda P, Park M, Dharmarha V, Shah SR, Clarke A, Austin M, Moremen KW, Yarema KJ.

PLoS One. 2018 May 30;13(5):e0195812. doi: 10.1371/journal.pone.0195812. eCollection 2018.

2.

Evaluation of liquid from the Papanicolaou test and other liquid biopsies for the detection of endometrial and ovarian cancers.

Wang Y, Li L, Douville C, Cohen JD, Yen TT, Kinde I, Sundfelt K, Kjær SK, Hruban RH, Shih IM, Wang TL, Kurman RJ, Springer S, Ptak J, Popoli M, Schaefer J, Silliman N, Dobbyn L, Tanner EJ, Angarita A, Lycke M, Jochumsen K, Afsari B, Danilova L, Levine DA, Jardon K, Zeng X, Arseneau J, Fu L, Diaz LA Jr, Karchin R, Tomasetti C, Kinzler KW, Vogelstein B, Fader AN, Gilbert L, Papadopoulos N.

Sci Transl Med. 2018 Mar 21;10(433). pii: eaap8793. doi: 10.1126/scitranslmed.aap8793.

PMID:
29563323
3.

Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy.

Springer SU, Chen CH, Rodriguez Pena MDC, Li L, Douville C, Wang Y, Cohen JD, Taheri D, Silliman N, Schaefer J, Ptak J, Dobbyn L, Papoli M, Kinde I, Afsari B, Tregnago AC, Bezerra SM, VandenBussche C, Fujita K, Ertoy D, Cunha IW, Yu L, Bivalacqua TJ, Grollman AP, Diaz LA, Karchin R, Danilova L, Huang CY, Shun CT, Turesky RJ, Yun BH, Rosenquist TA, Pu YS, Hruban RH, Tomasetti C, Papadopoulos N, Kinzler KW, Vogelstein B, Dickman KG, Netto GJ.

Elife. 2018 Mar 20;7. pii: e32143. doi: 10.7554/eLife.32143.

4.

Detection of aneuploidy in patients with cancer through amplification of long interspersed nucleotide elements (LINEs).

Douville C, Springer S, Kinde I, Cohen JD, Hruban RH, Lennon AM, Papadopoulos N, Kinzler KW, Vogelstein B, Karchin R.

Proc Natl Acad Sci U S A. 2018 Feb 20;115(8):1871-1876. doi: 10.1073/pnas.1717846115. Epub 2018 Feb 5.

PMID:
29432176
5.

Detection and localization of surgically resectable cancers with a multi-analyte blood test.

Cohen JD, Li L, Wang Y, Thoburn C, Afsari B, Danilova L, Douville C, Javed AA, Wong F, Mattox A, Hruban RH, Wolfgang CL, Goggins MG, Dal Molin M, Wang TL, Roden R, Klein AP, Ptak J, Dobbyn L, Schaefer J, Silliman N, Popoli M, Vogelstein JT, Browne JD, Schoen RE, Brand RE, Tie J, Gibbs P, Wong HL, Mansfield AS, Jen J, Hanash SM, Falconi M, Allen PJ, Zhou S, Bettegowda C, Diaz LA Jr, Tomasetti C, Kinzler KW, Vogelstein B, Lennon AM, Papadopoulos N.

Science. 2018 Feb 23;359(6378):926-930. doi: 10.1126/science.aar3247. Epub 2018 Jan 18.

PMID:
29348365
6.

CRAVAT 4: Cancer-Related Analysis of Variants Toolkit.

Masica DL, Douville C, Tokheim C, Bhattacharya R, Kim R, Moad K, Ryan MC, Karchin R.

Cancer Res. 2017 Nov 1;77(21):e35-e38. doi: 10.1158/0008-5472.CAN-17-0338.

PMID:
29092935
7.

Effects of an Extreme Flood on Trace Elements in River Water-From Urban Stream to Major River Basin.

Barber LB, Paschke SS, Battaglin WA, Douville C, Fitzgerald KC, Keefe SH, Roth DA, Vajda AM.

Environ Sci Technol. 2017 Sep 19;51(18):10344-10356. doi: 10.1021/acs.est.7b01767. Epub 2017 Sep 1.

PMID:
28862461
8.

Matching phenotypes to whole genomes: Lessons learned from four iterations of the personal genome project community challenges.

Cai B, Li B, Kiga N, Thusberg J, Bergquist T, Chen YC, Niknafs N, Carter H, Tokheim C, Beleva-Guthrie V, Douville C, Bhattacharya R, Yeo HTG, Fan J, Sengupta S, Kim D, Cline M, Turner T, Diekhans M, Zaucha J, Pal LR, Cao C, Yu CH, Yin Y, Carraro M, Giollo M, Ferrari C, Leonardi E, Tosatto SCE, Bobe J, Ball M, Hoskins RA, Repo S, Church G, Brenner SE, Moult J, Gough J, Stanke M, Karchin R, Mooney SD.

Hum Mutat. 2017 Sep;38(9):1266-1276. doi: 10.1002/humu.23265. Epub 2017 Jun 19.

9.

Whole Genome Sequencing Defines the Genetic Heterogeneity of Familial Pancreatic Cancer.

Roberts NJ, Norris AL, Petersen GM, Bondy ML, Brand R, Gallinger S, Kurtz RC, Olson SH, Rustgi AK, Schwartz AG, Stoffel E, Syngal S, Zogopoulos G, Ali SZ, Axilbund J, Chaffee KG, Chen YC, Cote ML, Childs EJ, Douville C, Goes FS, Herman JM, Iacobuzio-Donahue C, Kramer M, Makohon-Moore A, McCombie RW, McMahon KW, Niknafs N, Parla J, Pirooznia M, Potash JB, Rhim AD, Smith AL, Wang Y, Wolfgang CL, Wood LD, Zandi PP, Goggins M, Karchin R, Eshleman JR, Papadopoulos N, Kinzler KW, Vogelstein B, Hruban RH, Klein AP.

Cancer Discov. 2016 Feb;6(2):166-75. doi: 10.1158/2159-8290.CD-15-0402. Epub 2015 Dec 9.

10.

Assessing the Pathogenicity of Insertion and Deletion Variants with the Variant Effect Scoring Tool (VEST-Indel).

Douville C, Masica DL, Stenson PD, Cooper DN, Gygax DM, Kim R, Ryan M, Karchin R.

Hum Mutat. 2016 Jan;37(1):28-35. doi: 10.1002/humu.22911. Epub 2015 Oct 26.

11.

A combination of molecular markers and clinical features improve the classification of pancreatic cysts.

Springer S, Wang Y, Dal Molin M, Masica DL, Jiao Y, Kinde I, Blackford A, Raman SP, Wolfgang CL, Tomita T, Niknafs N, Douville C, Ptak J, Dobbyn L, Allen PJ, Klimstra DS, Schattner MA, Schmidt CM, Yip-Schneider M, Cummings OW, Brand RE, Zeh HJ, Singhi AD, Scarpa A, Salvia R, Malleo G, Zamboni G, Falconi M, Jang JY, Kim SW, Kwon W, Hong SM, Song KB, Kim SC, Swan N, Murphy J, Geoghegan J, Brugge W, Fernandez-Del Castillo C, Mino-Kenudson M, Schulick R, Edil BH, Adsay V, Paulino J, van Hooft J, Yachida S, Nara S, Hiraoka N, Yamao K, Hijioka S, van der Merwe S, Goggins M, Canto MI, Ahuja N, Hirose K, Makary M, Weiss MJ, Cameron J, Pittman M, Eshleman JR, Diaz LA Jr, Papadopoulos N, Kinzler KW, Karchin R, Hruban RH, Vogelstein B, Lennon AM.

Gastroenterology. 2015 Nov;149(6):1501-10. doi: 10.1053/j.gastro.2015.07.041. Epub 2015 Aug 4.

12.

Proteins linked to autosomal dominant and autosomal recessive disorders harbor characteristic rare missense mutation distribution patterns.

Turner TN, Douville C, Kim D, Stenson PD, Cooper DN, Chakravarti A, Karchin R.

Hum Mol Genet. 2015 Nov 1;24(21):5995-6002. doi: 10.1093/hmg/ddv309. Epub 2015 Aug 5.

PMID:
26246501
13.

Impact of wastewater infrastructure upgrades on the urban water cycle: Reduction in halogenated reaction byproducts following conversion from chlorine gas to ultraviolet light disinfection.

Barber LB, Hladik ML, Vajda AM, Fitzgerald KC, Douville C.

Sci Total Environ. 2015 Oct 1;529:264-74. doi: 10.1016/j.scitotenv.2015.04.112. Epub 2015 May 27.

PMID:
26025637
14.

Cleaved NOTCH1 Expression Pattern in Head and Neck Squamous Cell Carcinoma Is Associated with NOTCH1 Mutation, HPV Status, and High-Risk Features.

Rettig EM, Chung CH, Bishop JA, Howard JD, Sharma R, Li RJ, Douville C, Karchin R, Izumchenko E, Sidransky D, Koch W, Califano J, Agrawal N, Fakhry C.

Cancer Prev Res (Phila). 2015 Apr;8(4):287-95. doi: 10.1158/1940-6207.CAPR-14-0366. Epub 2015 Jan 29.

15.

A probabilistic model to predict clinical phenotypic traits from genome sequencing.

Chen YC, Douville C, Wang C, Niknafs N, Yeo G, Beleva-Guthrie V, Carter H, Stenson PD, Cooper DN, Li B, Mooney S, Karchin R.

PLoS Comput Biol. 2014 Sep 4;10(9):e1003825. doi: 10.1371/journal.pcbi.1003825. eCollection 2014 Sep.

16.

Predicting survival in head and neck squamous cell carcinoma from TP53 mutation.

Masica DL, Li S, Douville C, Manola J, Ferris RL, Burtness B, Forastiere AA, Koch WM, Chung CH, Karchin R.

Hum Genet. 2015 May;134(5):497-507. doi: 10.1007/s00439-014-1470-0. Epub 2014 Aug 10.

17.

Experimental assessment of splicing variants using expression minigenes and comparison with in silico predictions.

Sharma N, Sosnay PR, Ramalho AS, Douville C, Franca A, Gottschalk LB, Park J, Lee M, Vecchio-Pagan B, Raraigh KS, Amaral MD, Karchin R, Cutting GR.

Hum Mutat. 2014 Oct;35(10):1249-59. doi: 10.1002/humu.22624. Epub 2014 Sep 10.

18.

Quantitative detection of cirrhosis: towards the development of computer-assisted detection method.

Huhdanpaa HT, Zhang P, Krishnamurthy VN, Douville C, Enchakolody B, Chou C, Ethiraj S, Wang S, Su GL.

J Digit Imaging. 2014 Oct;27(5):601-9. doi: 10.1007/s10278-014-9696-x.

19.

Mutational signature of aristolochic acid exposure as revealed by whole-exome sequencing.

Hoang ML, Chen CH, Sidorenko VS, He J, Dickman KG, Yun BH, Moriya M, Niknafs N, Douville C, Karchin R, Turesky RJ, Pu YS, Vogelstein B, Papadopoulos N, Grollman AP, Kinzler KW, Rosenquist TA.

Sci Transl Med. 2013 Aug 7;5(197):197ra102. doi: 10.1126/scitranslmed.3006200.

20.

Identifying Mendelian disease genes with the variant effect scoring tool.

Carter H, Douville C, Stenson PD, Cooper DN, Karchin R.

BMC Genomics. 2013;14 Suppl 3:S3. doi: 10.1186/1471-2164-14-S3-S3. Epub 2013 May 28.

21.

CRAVAT: cancer-related analysis of variants toolkit.

Douville C, Carter H, Kim R, Niknafs N, Diekhans M, Stenson PD, Cooper DN, Ryan M, Karchin R.

Bioinformatics. 2013 Mar 1;29(5):647-8. doi: 10.1093/bioinformatics/btt017. Epub 2013 Jan 16.

22.

Fish endocrine disruption responses to a major wastewater treatment facility upgrade.

Barber LB, Vajda AM, Douville C, Norris DO, Writer JH.

Environ Sci Technol. 2012 Feb 21;46(4):2121-31. doi: 10.1021/es202880e. Epub 2012 Feb 2.

PMID:
22300164
23.

Development of a quantitative method for the diagnosis of cirrhosis.

Huhdanpaa H, Douville C, Baum K, Krishnamurthy VN, Holcombe S, Enchakalody B, Wang L, Wang SC, Su GL.

Scand J Gastroenterol. 2011 Dec;46(12):1468-77. doi: 10.3109/00365521.2011.613946. Epub 2011 Oct 13.

PMID:
21992231
24.

Microembolic signal monitoring after coiling of unruptured cerebral aneurysms: an observational analysis of 123 cases.

Schubert GA, Thomé C, Seiz M, Douville C, Eskridge J.

AJNR Am J Neuroradiol. 2011 Sep;32(8):1386-91. doi: 10.3174/ajnr.A2507. Epub 2011 Jun 16.

25.

Practice standards for transcranial Doppler (TCD) ultrasound. Part II. Clinical indications and expected outcomes.

Alexandrov AV, Sloan MA, Tegeler CH, Newell DN, Lumsden A, Garami Z, Levy CR, Wong LK, Douville C, Kaps M, Tsivgoulis G; American Society of Neuroimaging Practice Guidelines Committee.

J Neuroimaging. 2012 Jul;22(3):215-24. doi: 10.1111/j.1552-6569.2010.00523.x. Epub 2010 Oct 26.

PMID:
20977531
26.

Time course for autoregulation recovery following severe traumatic brain injury.

Sviri GE, Aaslid R, Douville CM, Moore A, Newell DW.

J Neurosurg. 2009 Oct;111(4):695-700. doi: 10.3171/2008.10.17686.

PMID:
19392589
27.

Asymmetric dynamic cerebral autoregulatory response to cyclic stimuli.

Aaslid R, Blaha M, Sviri G, Douville CM, Newell DW.

Stroke. 2007 May;38(5):1465-9. Epub 2007 Apr 5.

28.

The effect of caffeine on dilated cerebral circulation and on diagnostic CO2 reactivity testing.

Blaha M, Benes V, Douville CM, Newell DW.

J Clin Neurosci. 2007 May;14(5):464-7. Epub 2007 Mar 7.

PMID:
17346975
29.

Practice standards for transcranial Doppler ultrasound: part I--test performance.

Alexandrov AV, Sloan MA, Wong LK, Douville C, Razumovsky AY, Koroshetz WJ, Kaps M, Tegeler CH; American Society of Neuroimaging Practice Guidelines Committee.

J Neuroimaging. 2007 Jan;17(1):11-8.

PMID:
17238867
30.

Impact of basilar artery vasospasm on outcome in patients with severe cerebral vasospasm after aneurysmal subarachnoid hemorrhage.

Sviri GE, Newell DW, Lewis DH, Douville C, Ghodke B, Chowdhary M, Lam AM, Haynor D, Zaaroor M, Britz GW.

Stroke. 2006 Nov;37(11):2738-43. Epub 2006 Sep 28.

31.

Transcranial Doppler grading criteria for basilar artery vasospasm.

Sviri GE, Ghodke B, Britz GW, Douville CM, Haynor DR, Mesiwala AH, Lam AM, Newell DW.

Neurosurgery. 2006 Aug;59(2):360-6; discussion 360-6.

PMID:
16883176
32.

Perioperative use of transcranial Doppler.

Kincaid MS, Douville CM, Lam AM.

Anesth Analg. 2005 Jan;100(1):291-2; author reply 292. No abstract available.

PMID:
15616095
33.

Basilar artery vasospasm and delayed posterior circulation ischemia after aneurysmal subarachnoid hemorrhage.

Sviri GE, Lewis DH, Correa R, Britz GW, Douville CM, Newell DW.

Stroke. 2004 Aug;35(8):1867-72. Epub 2004 Jun 10.

34.

Ophthalmic artery blood flow velocity increases during hypocapnia.

Lee LA, Vavilala MS, Lam AM, Douville C, Moore A, Visco E, Newell DW.

Can J Anaesth. 2004 Apr;51(4):388-92.

PMID:
15064270
35.

Cerebral blood flow and dynamic cerebral autoregulation during ethanol intoxication and hypercapnia.

Blaha M, Aaslid R, Douville CM, Correra R, Newell DW.

J Clin Neurosci. 2003 Mar;10(2):195-8.

PMID:
12637048
36.

Autoregulatory response and CO2 reactivity of the basilar artery.

Park CW, Sturzenegger M, Douville CM, Aaslid R, Newell DW.

Stroke. 2003 Jan;34(1):34-9.

37.

Dynamic cerebral autoregulation in healthy adolescents.

Vavilala MS, Newell DW, Junger E, Douville CM, Aaslid R, Rivara FP, Lam AM.

Acta Anaesthesiol Scand. 2002 Apr;46(4):393-7.

PMID:
11952439
38.

Loss of T-cell receptor-CD3zeta and T-cell function in tumor-infiltrating lymphocytes but not in tumor-associated lymphocytes in ovarian carcinoma.

Lockhart DC, Chan AK, Mak S, Joo HG, Daust HA, Carritte A, Douville CC, Goedegebuure PS, Eberlein TJ.

Surgery. 2001 Jun;129(6):749-56.

PMID:
11391375
40.

Relationship between intracranial pressure and the development of vasospasm after aneurysmal subarachnoid hemorrhage.

Fukuhara T, Douville CM, Eliott JP, Newell DW, Winn HR.

Neurol Med Chir (Tokyo). 1998 Nov;38(11):710-5; discussion 716-7.

41.

Comparison of balloon angioplasty and papaverine infusion for the treatment of vasospasm following aneurysmal subarachnoid hemorrhage.

Elliott JP, Newell DW, Lam DJ, Eskridge JM, Douville CM, Le Roux PD, Lewis DH, Mayberg MR, Grady MS, Winn HR.

J Neurosurg. 1998 Feb;88(2):277-84.

PMID:
9452236
42.

The HER2/neu-derived peptide p654-662 is a tumor-associated antigen in human pancreatic cancer recognized by cytotoxic T lymphocytes.

Peiper M, Goedegebuure PS, Linehan DC, Ganguly E, Douville CC, Eberlein TJ.

Eur J Immunol. 1997 May;27(5):1115-23.

PMID:
9174600
43.

Cerebral autoregulation following minor head injury.

Jünger EC, Newell DW, Grant GA, Avellino AM, Ghatan S, Douville CM, Lam AM, Aaslid R, Winn HR.

J Neurosurg. 1997 Mar;86(3):425-32.

PMID:
9046298
44.

Simultaneous production of T helper-1-like cytokines and cytolytic activity by tumor-specific T cells in ovarian and breast cancer.

Goedegebuure PS, Douville CC, Doherty JM, Linehan DC, Lee KY, Ganguly EK, Eberlein TJ.

Cell Immunol. 1997 Feb 1;175(2):150-6.

PMID:
9023420
45.

Evaluation of impaired cerebral autoregulation by the Valsalva maneuver.

Tiecks FP, Douville C, Byrd S, Lam AM, Newell DW.

Stroke. 1996 Jul;27(7):1177-82.

46.

Effects of the valsalva maneuver on cerebral circulation in healthy adults. A transcranial Doppler Study.

Tiecks FP, Lam AM, Matta BF, Strebel S, Douville C, Newell DW.

Stroke. 1995 Aug;26(8):1386-92.

47.

Transcranial Doppler and angiographic findings in adolescent stretch syncope.

Sturzenegger M, Newell DW, Douville CM, Byrd S, Schoonover KD, Nicholls SC.

J Neurol Neurosurg Psychiatry. 1995 Mar;58(3):367-70. Review.

48.

Dynamic transcranial Doppler assessment of positional vertebrobasilar ischemia.

Sturzenegger M, Newell DW, Douville C, Byrd S, Schoonover K.

Stroke. 1994 Sep;25(9):1776-83.

PMID:
7915439
49.

TCR V beta 3+ and V beta 6+ CTL recognize tumor-associated antigens related to HER2/neu expression in HLA-A2+ ovarian cancers.

Peoples GE, Yoshino I, Douville CC, Andrews JV, Goedegebuure PS, Eberlein TJ.

J Immunol. 1994 May 15;152(10):4993-9.

PMID:
7909829
50.

Shear bond strength, microleakage and scanning electron microscopy study of the Clearfil Liner Bond System.

Barkmeier WW, Douville CJ, Matranga LF.

Asian J Aesthet Dent. 1993 Jul;1(2):85-90.

PMID:
7921801

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