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Items: 46

1.

Enhancing DNA metabarcoding performance and applicability with bait capture enrichment and DNA from conservative ethanol.

Gauthier M, Konecny-Dupré L, Nguyen A, Elbrecht V, Datry T, Douady CJ, Lefébure T.

Mol Ecol Resour. 2019 Sep 4. doi: 10.1111/1755-0998.13088. [Epub ahead of print]

PMID:
31484209
2.

Anthropization level of Lascaux Cave microbiome shown by regional-scale comparisons of pristine and anthropized caves.

Alonso L, Pommier T, Kaufmann B, Dubost A, Chapulliot D, Doré J, Douady CJ, Moënne-Loccoz Y.

Mol Ecol. 2019 Jul;28(14):3383-3394. doi: 10.1111/mec.15144. Epub 2019 Jul 24.

PMID:
31177607
3.

Erratum: Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods.

Saclier N, François CM, Konecny-Dupré L, Lartillot N, Guéguen L, Duret L, Malard F, Douady CJ, Lefébure T.

Mol Biol Evol. 2019 Mar 1;36(3):641. doi: 10.1093/molbev/msy247. No abstract available.

PMID:
30690454
4.

Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods.

Saclier N, François CM, Konecny-Dupré L, Lartillot N, Guéguen L, Duret L, Malard F, Douady CJ, Lefébure T.

Mol Biol Evol. 2018 Dec 1;35(12):2900-2912. doi: 10.1093/molbev/msy184. Erratum in: Mol Biol Evol. 2019 Mar 1;36(3):641.

PMID:
30247705
5.

Less effective selection leads to larger genomes.

Lefébure T, Morvan C, Malard F, François C, Konecny-Dupré L, Guéguen L, Weiss-Gayet M, Seguin-Orlando A, Ermini L, Sarkissian C, Charrier NP, Eme D, Mermillod-Blondin F, Duret L, Vieira C, Orlando L, Douady CJ.

Genome Res. 2017 Jun;27(6):1016-1028. doi: 10.1101/gr.212589.116. Epub 2017 Apr 19.

6.

No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes.

Francois CM, Duret L, Simon L, Mermillod-Blondin F, Malard F, Konecny-Dupré L, Planel R, Penel S, Douady CJ, Lefébure T.

Mol Biol Evol. 2016 Oct;33(10):2605-20. doi: 10.1093/molbev/msw131. Epub 2016 Jul 8.

PMID:
27401232
7.

Nomenclature for the Nameless: A Proposal for an Integrative Molecular Taxonomy of Cryptic Diversity Exemplified by Planktonic Foraminifera.

Morard R, Escarguel G, Weiner AK, André A, Douady CJ, Wade CM, Darling KF, Ujiié Y, Seears HA, Quillévéré F, de Garidel-Thoron T, de Vargas C, Kucera M.

Syst Biol. 2016 Sep;65(5):925-40. doi: 10.1093/sysbio/syw031. Epub 2016 Apr 12.

PMID:
27073250
8.

PFR²: a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution.

Morard R, Darling KF, Mahé F, Audic S, Ujiié Y, Weiner AK, André A, Seears HA, Wade CM, Quillévéré F, Douady CJ, Escarguel G, de Garidel-Thoron T, Siccha M, Kucera M, de Vargas C.

Mol Ecol Resour. 2015 Nov;15(6):1472-85. doi: 10.1111/1755-0998.12410. Epub 2015 Apr 15.

PMID:
25828689
9.

Mitochondrial genomes reveal the extinct Hippidion as an outgroup to all living equids.

Der Sarkissian C, Vilstrup JT, Schubert M, Seguin-Orlando A, Eme D, Weinstock J, Alberdi MT, Martin F, Lopez PM, Prado JL, Prieto A, Douady CJ, Stafford TW, Willerslev E, Orlando L.

Biol Lett. 2015 Mar;11(3). pii: 20141058. doi: 10.1098/rsbl.2014.1058.

10.

SSU rDNA divergence in planktonic foraminifera: molecular taxonomy and biogeographic implications.

André A, Quillévéré F, Morard R, Ujiié Y, Escarguel G, de Vargas C, de Garidel-Thoron T, Douady CJ.

PLoS One. 2014 Aug 13;9(8):e104641. doi: 10.1371/journal.pone.0104641. eCollection 2014.

11.

Bayesian phylogeographic inferences reveal contrasting colonization dynamics among European groundwater isopods.

Eme D, Malard F, Konecny-Dupré L, Lefébure T, Douady CJ.

Mol Ecol. 2013 Nov;22(22):5685-99. doi: 10.1111/mec.12520. Epub 2013 Oct 28.

PMID:
24102689
12.

Microsatellite development and first population size estimates for the groundwater isopod Proasellus walteri.

Capderrey C, Kaufmann B, Jean P, Malard F, Konecny-Dupré L, Lefébure T, Douady CJ.

PLoS One. 2013 Sep 27;8(9):e76213. doi: 10.1371/journal.pone.0076213. eCollection 2013.

13.

Timetree of Aselloidea reveals species diversification dynamics in groundwater.

Morvan C, Malard F, Paradis E, Lefébure T, Konecny-Dupré L, Douady CJ.

Syst Biol. 2013 Jul;62(4):512-22. doi: 10.1093/sysbio/syt015. Epub 2013 Mar 5.

PMID:
23461879
14.

Thermal tolerance breadths among groundwater crustaceans living in a thermally constant environment.

Mermillod-Blondin F, Lefour C, Lalouette L, Renault D, Malard F, Simon L, Douady CJ.

J Exp Biol. 2013 May 1;216(Pt 9):1683-94. doi: 10.1242/jeb.081232. Epub 2013 Jan 24.

15.

Worldwide genotyping in the planktonic foraminifer Globoconella inflata: implications for life history and paleoceanography.

Morard R, Quillévéré F, Douady CJ, de Vargas C, de Garidel-Thoron T, Escarguel G.

PLoS One. 2011;6(10):e26665. doi: 10.1371/journal.pone.0026665. Epub 2011 Oct 20.

16.

Plant resistance to mechanical stress: evidence of an avoidance-tolerance trade-off.

Puijalon S, Bouma TJ, Douady CJ, van Groenendael J, Anten NP, Martel E, Bornette G.

New Phytol. 2011 Sep;191(4):1141-9. doi: 10.1111/j.1469-8137.2011.03763.x. Epub 2011 May 17.

17.

Preventing the pollution of mitochondrial datasets with nuclear mitochondrial paralogs (numts).

Calvignac S, Konecny L, Malard F, Douady CJ.

Mitochondrion. 2011 Mar;11(2):246-54. doi: 10.1016/j.mito.2010.10.004. Epub 2010 Nov 1.

PMID:
21047564
18.

First cellular approach of the effects of global warming on groundwater organisms: a study of the HSP70 gene expression.

Colson-Proch C, Morales A, Hervant F, Konecny L, Moulin C, Douady CJ.

Cell Stress Chaperones. 2010 May;15(3):259-70. doi: 10.1007/s12192-009-0139-4. Epub 2009 Sep 24.

19.

Do current environmental conditions explain physiological and metabolic responses of subterranean crustaceans to cold?

Colson-Proch C, Renault D, Gravot A, Douady CJ, Hervant F.

J Exp Biol. 2009 Jun;212(Pt 12):1859-68. doi: 10.1242/jeb.027987. Erratum in: J Exp Biol. 2010 Jul 1;213(Pt 13):2354.

20.

Freeze tolerance evolution among anurans: Frequency and timing of appearance.

Voituron Y, Barré H, Ramløv H, Douady CJ.

Cryobiology. 2009 Jun;58(3):241-7. doi: 10.1016/j.cryobiol.2009.01.001.

PMID:
19444965
21.

DNA from extinct giant lemurs links archaeolemurids to extant indriids.

Orlando L, Calvignac S, Schnebelen C, Douady CJ, Godfrey LR, Hänni C.

BMC Evol Biol. 2008 Apr 28;8:121. doi: 10.1186/1471-2148-8-121.

22.

Scent evolution in Chinese roses.

Scalliet G, Piola F, Douady CJ, Réty S, Raymond O, Baudino S, Bordji K, Bendahmane M, Dumas C, Cock JM, Hugueney P.

Proc Natl Acad Sci U S A. 2008 Apr 15;105(15):5927-32. doi: 10.1073/pnas.0711551105. Epub 2008 Apr 14.

23.

Mammoth and elephant phylogenetic relationships: Mammut americanum, the missing outgroup.

Orlando L, Hänni C, Douady CJ.

Evol Bioinform Online. 2007 Mar 29;3:45-51.

24.

Testing dispersal and cryptic diversity in a widely distributed groundwater amphipod (Niphargus rhenorhodanensis).

Lefébure T, Douady CJ, Malard F, Gibert J.

Mol Phylogenet Evol. 2007 Mar;42(3):676-86. Epub 2006 Sep 8.

PMID:
17049283
25.

Geographic distribution of an extinct equid (Equus hydruntinus: Mammalia, Equidae) revealed by morphological and genetical analyses of fossils.

Orlando L, Mashkour M, Burke A, Douady CJ, Eisenmann V, Hänni C.

Mol Ecol. 2006 Jul;15(8):2083-93.

PMID:
16780426
26.

Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments.

Lefébure T, Douady CJ, Gouy M, Trontelj P, Briolay J, Gibert J.

Mol Ecol. 2006 Jun;15(7):1797-806.

PMID:
16689899
27.

Relationship between morphological taxonomy and molecular divergence within Crustacea: proposal of a molecular threshold to help species delimitation.

Lefébure T, Douady CJ, Gouy M, Gibert J.

Mol Phylogenet Evol. 2006 Aug;40(2):435-47. Epub 2006 May 2.

PMID:
16647275
28.

Molecular phylogeny of the extinct giant deer, Megaloceros giganteus.

Hughes S, Hayden TJ, Douady CJ, Tougard C, Germonpré M, Stuart A, Lbova L, Carden RF, Hänni C, Say L.

Mol Phylogenet Evol. 2006 Jul;40(1):285-91. Epub 2006 Mar 23. No abstract available.

PMID:
16556506
29.
30.

Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes.

Boucher Y, Douady CJ, Sharma AK, Kamekura M, Doolittle WF.

J Bacteriol. 2004 Jun;186(12):3980-90.

31.

The use of composite taxa in supermatrices.

Springer MS, Scally M, Madsen O, de Jong WW, Douady CJ, Stanhope MJ.

Mol Phylogenet Evol. 2004 Mar;30(3):883-4. No abstract available.

PMID:
15012970
32.

"Lipotyphlan" phylogeny based on the growth hormone receptor gene: a reanalysis.

Douady CJ, Scally M, Springer MS, Stanhope MJ.

Mol Phylogenet Evol. 2004 Mar;30(3):778-88.

PMID:
15012955
33.

Diversity of bacteriorhodopsins in different hypersaline waters from a single Spanish saltern.

Papke RT, Douady CJ, Doolittle WF, Rodríguez-Valera F.

Environ Microbiol. 2003 Nov;5(11):1039-45.

PMID:
14641583
34.

Lateral gene transfer and the origins of prokaryotic groups.

Boucher Y, Douady CJ, Papke RT, Walsh DA, Boudreau ME, Nesbø CL, Case RJ, Doolittle WF.

Annu Rev Genet. 2003;37:283-328. Review.

PMID:
14616063
35.

Horizontal gene transfer and phylogenetics.

Philippe H, Douady CJ.

Curr Opin Microbiol. 2003 Oct;6(5):498-505. Review.

PMID:
14572543
36.

Molecular estimation of eulipotyphlan divergence times and the evolution of "Insectivora".

Douady CJ, Douzery EJ.

Mol Phylogenet Evol. 2003 Aug;28(2):285-96.

PMID:
12878465
37.

The Sahara as a vicariant agent, and the role of Miocene climatic events, in the diversification of the mammalian order Macroscelidea (elephant shrews).

Douady CJ, Catzeflis F, Raman J, Springer MS, Stanhope MJ.

Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8325-30. Epub 2003 Jun 23.

38.

Using analytical ultracentrifugation to study compositional variation in vertebrate genomes.

Clay O, Douady CJ, Carels N, Hughes S, Bucciarelli G, Bernardi G.

Eur Biophys J. 2003 Aug;32(5):418-26. Epub 2003 Apr 9.

PMID:
12684711
39.

Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability.

Douady CJ, Delsuc F, Boucher Y, Doolittle WF, Douzery EJ.

Mol Biol Evol. 2003 Feb;20(2):248-54.

40.

How big is the iceberg of which organellar genes in nuclear genomes are but the tip?

Doolittle WF, Boucher Y, Nesbø CL, Douady CJ, Andersson JO, Roger AJ.

Philos Trans R Soc Lond B Biol Sci. 2003 Jan 29;358(1429):39-57; discussion 57-8. Review.

41.

Molecular phylogenetic evidence refuting the hypothesis of Batoidea (rays and skates) as derived sharks.

Douady CJ, Dosay M, Shivji MS, Stanhope MJ.

Mol Phylogenet Evol. 2003 Feb;26(2):215-21.

PMID:
12565032
42.

Molecular phylogenetic evidence confirming the Eulipotyphla concept and in support of hedgehogs as the sister group to shrews.

Douady CJ, Chatelier PI, Madsen O, de Jong WW, Catzeflis F, Springer MS, Stanhope MJ.

Mol Phylogenet Evol. 2002 Oct;25(1):200-9.

PMID:
12383761
43.

Molecular evidence for the monophyly of tenrecidae (mammalia) and the timing of the colonization of Madagascar by Malagasy Tenrecs.

Douady CJ, Catzeflis F, Kao DJ, Springer MS, Stanhope MJ.

Mol Phylogenet Evol. 2002 Mar;22(3):357-63.

PMID:
11884160
44.

Resolution of the early placental mammal radiation using Bayesian phylogenetics.

Murphy WJ, Eizirik E, O'Brien SJ, Madsen O, Scally M, Douady CJ, Teeling E, Ryder OA, Stanhope MJ, de Jong WW, Springer MS.

Science. 2001 Dec 14;294(5550):2348-51.

45.

Universal trees based on large combined protein sequence data sets.

Brown JR, Douady CJ, Italia MJ, Marshall WE, Stanhope MJ.

Nat Genet. 2001 Jul;28(3):281-5.

PMID:
11431701
46.

Parallel adaptive radiations in two major clades of placental mammals.

Madsen O, Scally M, Douady CJ, Kao DJ, DeBry RW, Adkins R, Amrine HM, Stanhope MJ, de Jong WW, Springer MS.

Nature. 2001 Feb 1;409(6820):610-4.

PMID:
11214318

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