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Items: 1 to 50 of 57

1.

PRC2-Associated Chromatin Contacts in the Developing Limb Reveal a Possible Mechanism for the Atypical Role of PRC2 in HoxA Gene Expression.

Gentile C, Berlivet S, Mayran A, Paquette D, Guerard-Millet F, Bajon E, Dostie J, Kmita M.

Dev Cell. 2019 Jul 22;50(2):184-196.e4. doi: 10.1016/j.devcel.2019.05.021. Epub 2019 Jun 13.

PMID:
31204170
2.

Double-Stranded Biotinylated Donor Enhances Homology-Directed Repair in Combination with Cas9 Monoavidin in Mammalian Cells.

Roche PJR, Gytz H, Hussain F, Cameron CJF, Paquette D, Blanchette M, Dostie J, Nagar B, Akavia UD.

CRISPR J. 2018 Dec;1:414-430. doi: 10.1089/crispr.2018.0045.

PMID:
31021244
3.

2C-ChIP: measuring chromatin immunoprecipitation signal from defined genomic regions with deep sequencing.

Wang XQD, Cameron CJF, Paquette D, Segal D, Warsaba R, Blanchette M, Dostie J.

BMC Genomics. 2019 Feb 28;20(1):162. doi: 10.1186/s12864-019-5532-5.

4.

CDK4/6 inhibitors target SMARCA4-determined cyclin D1 deficiency in hypercalcemic small cell carcinoma of the ovary.

Xue Y, Meehan B, Macdonald E, Venneti S, Wang XQD, Witkowski L, Jelinic P, Kong T, Martinez D, Morin G, Firlit M, Abedini A, Johnson RM, Cencic R, Patibandla J, Chen H, Papadakis AI, Auguste A, de Rink I, Kerkhoven RM, Bertos N, Gotlieb WH, Clarke BA, Leary A, Witcher M, Guiot MC, Pelletier J, Dostie J, Park M, Judkins AR, Hass R, Levine DA, Rak J, Vanderhyden B, Foulkes WD, Huang S.

Nat Commun. 2019 Feb 4;10(1):558. doi: 10.1038/s41467-018-06958-9.

5.

SMARCA4 loss is synthetic lethal with CDK4/6 inhibition in non-small cell lung cancer.

Xue Y, Meehan B, Fu Z, Wang XQD, Fiset PO, Rieker R, Levins C, Kong T, Zhu X, Morin G, Skerritt L, Herpel E, Venneti S, Martinez D, Judkins AR, Jung S, Camilleri-Broet S, Gonzalez AV, Guiot MC, Lockwood WW, Spicer JD, Agaimy A, Pastor WA, Dostie J, Rak J, Foulkes WD, Huang S.

Nat Commun. 2019 Feb 4;10(1):557. doi: 10.1038/s41467-019-08380-1.

6.

Novel long-range regulatory mechanisms controlling PKD2 gene expression.

Moisan S, Levon S, Cornec-Le Gall E, Le Meur Y, Audrézet MP, Dostie J, Férec C.

BMC Genomics. 2018 Jul 3;19(1):515. doi: 10.1186/s12864-018-4892-6.

7.

3D genome mapping and analysis methods.

Dostie J, Blanchette M.

Methods. 2018 Jun 1;142:1-2. doi: 10.1016/j.ymeth.2018.05.017. No abstract available.

PMID:
29880426
8.

Swimming Against the Current: A Qualitative Review of the Work Experiences and Adaptations Made by Employees With Arthritis.

Purc-Stephenson RJ, Dostie J, Smith HJ.

Arthritis Care Res (Hoboken). 2018 Nov;70(11):1587-1597. doi: 10.1002/acr.23528. Epub 2018 Oct 8.

9.

Complex multi-enhancer contacts captured by genome architecture mapping.

Beagrie RA, Scialdone A, Schueler M, Kraemer DC, Chotalia M, Xie SQ, Barbieri M, de Santiago I, Lavitas LM, Branco MR, Fraser J, Dostie J, Game L, Dillon N, Edwards PA, Nicodemi M, Pombo A.

Nature. 2017 Mar 23;543(7646):519-524. doi: 10.1038/nature21411. Epub 2017 Mar 8.

10.

Reciprocal regulation of chromatin state and architecture by HOTAIRM1 contributes to temporal collinear HOXA gene activation.

Wang XQ, Dostie J.

Nucleic Acids Res. 2017 Feb 17;45(3):1091-1104. doi: 10.1093/nar/gkw966.

11.

Chromosome folding and its regulation in health and disease.

Wang XQD, Dostie J.

Curr Opin Genet Dev. 2017 Apr;43:23-30. doi: 10.1016/j.gde.2016.10.006. Epub 2016 Dec 9. Review.

PMID:
27940207
12.

Spatial Organization of Epigenomes.

Dubé JC, Wang XQ, Dostie J.

Curr Mol Biol Rep. 2016 Mar;2(1):1-9. Epub 2016 Feb 4.

13.

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation.

Fraser J, Ferrai C, Chiariello AM, Schueler M, Rito T, Laudanno G, Barbieri M, Moore BL, Kraemer DC, Aitken S, Xie SQ, Morris KJ, Itoh M, Kawaji H, Jaeger I, Hayashizaki Y, Carninci P, Forrest AR; FANTOM Consortium, Semple CA, Dostie J, Pombo A, Nicodemi M.

Mol Syst Biol. 2015 Dec 23;11(12):852. doi: 10.15252/msb.20156492.

14.

PAM multiplicity marks genomic target sites as inhibitory to CRISPR-Cas9 editing.

Malina A, Cameron CJF, Robert F, Blanchette M, Dostie J, Pelletier J.

Nat Commun. 2015 Dec 8;6:10124. doi: 10.1038/ncomms10124.

15.

Analysis of long-range interactions in primary human cells identifies cooperative CFTR regulatory elements.

Moisan S, Berlivet S, Ka C, Le Gac G, Dostie J, Férec C.

Nucleic Acids Res. 2016 Apr 7;44(6):2564-76. doi: 10.1093/nar/gkv1300. Epub 2015 Nov 28.

16.

Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture.

Zheng HF, Forgetta V, Hsu YH, Estrada K, Rosello-Diez A, Leo PJ, Dahia CL, Park-Min KH, Tobias JH, Kooperberg C, Kleinman A, Styrkarsdottir U, Liu CT, Uggla C, Evans DS, Nielson CM, Walter K, Pettersson-Kymmer U, McCarthy S, Eriksson J, Kwan T, Jhamai M, Trajanoska K, Memari Y, Min J, Huang J, Danecek P, Wilmot B, Li R, Chou WC, Mokry LE, Moayyeri A, Claussnitzer M, Cheng CH, Cheung W, Medina-Gómez C, Ge B, Chen SH, Choi K, Oei L, Fraser J, Kraaij R, Hibbs MA, Gregson CL, Paquette D, Hofman A, Wibom C, Tranah GJ, Marshall M, Gardiner BB, Cremin K, Auer P, Hsu L, Ring S, Tung JY, Thorleifsson G, Enneman AW, van Schoor NM, de Groot LC, van der Velde N, Melin B, Kemp JP, Christiansen C, Sayers A, Zhou Y, Calderari S, van Rooij J, Carlson C, Peters U, Berlivet S, Dostie J, Uitterlinden AG, Williams SR, Farber C, Grinberg D, LaCroix AZ, Haessler J, Chasman DI, Giulianini F, Rose LM, Ridker PM, Eisman JA, Nguyen TV, Center JR, Nogues X, Garcia-Giralt N, Launer LL, Gudnason V, Mellström D, Vandenput L, Amin N, van Duijn CM, Karlsson MK, Ljunggren Ö, Svensson O, Hallmans G, Rousseau F, Giroux S, Bussière J, Arp PP, Koromani F, Prince RL, Lewis JR, Langdahl BL, Hermann AP, Jensen JE, Kaptoge S, Khaw KT, Reeve J, Formosa MM, Xuereb-Anastasi A, Åkesson K, McGuigan FE, Garg G, Olmos JM, Zarrabeitia MT, Riancho JA, Ralston SH, Alonso N, Jiang X, Goltzman D, Pastinen T, Grundberg E, Gauguier D, Orwoll ES, Karasik D, Davey-Smith G; AOGC Consortium, Smith AV, Siggeirsdottir K, Harris TB, Zillikens MC, van Meurs JB, Thorsteinsdottir U, Maurano MT, Timpson NJ, Soranzo N, Durbin R, Wilson SG, Ntzani EE, Brown MA, Stefansson K, Hinds DA, Spector T, Cupples LA, Ohlsson C, Greenwood CM; UK10K Consortium, Jackson RD, Rowe DW, Loomis CA, Evans DM, Ackert-Bicknell CL, Joyner AL, Duncan EL, Kiel DP, Rivadeneira F, Richards JB.

Nature. 2015 Oct 1;526(7571):112-7. doi: 10.1038/nature14878. Epub 2015 Sep 14.

17.

Pharmacological inhibition of DNA-PK stimulates Cas9-mediated genome editing.

Robert F, Barbeau M, Éthier S, Dostie J, Pelletier J.

Genome Med. 2015 Aug 27;7:93. doi: 10.1186/s13073-015-0215-6.

18.

An Overview of Genome Organization and How We Got There: from FISH to Hi-C.

Fraser J, Williamson I, Bickmore WA, Dostie J.

Microbiol Mol Biol Rev. 2015 Sep;79(3):347-72. doi: 10.1128/MMBR.00006-15. Review.

19.

Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization.

Williamson I, Berlivet S, Eskeland R, Boyle S, Illingworth RS, Paquette D, Dostie J, Bickmore WA.

Genes Dev. 2014 Dec 15;28(24):2778-91. doi: 10.1101/gad.251694.114.

20.

Protospacer adjacent motif (PAM)-distal sequences engage CRISPR Cas9 DNA target cleavage.

Cencic R, Miura H, Malina A, Robert F, Ethier S, Schmeing TM, Dostie J, Pelletier J.

PLoS One. 2014 Oct 2;9(10):e109213. doi: 10.1371/journal.pone.0109213. eCollection 2014.

21.

Classifying leukemia types with chromatin conformation data.

Rousseau M, Ferraiuolo MA, Crutchley JL, Wang XQ, Miura H, Blanchette M, Dostie J.

Genome Biol. 2014 Apr 30;15(4):R60. doi: 10.1186/gb-2014-15-4-r60.

22.

Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs.

Berlivet S, Paquette D, Dumouchel A, Langlais D, Dostie J, Kmita M.

PLoS Genet. 2013;9(12):e1004018. doi: 10.1371/journal.pgen.1004018. Epub 2013 Dec 26.

23.

Repurposing CRISPR/Cas9 for in situ functional assays.

Malina A, Mills JR, Cencic R, Yan Y, Fraser J, Schippers LM, Paquet M, Dostie J, Pelletier J.

Genes Dev. 2013 Dec 1;27(23):2602-14. doi: 10.1101/gad.227132.113.

24.

Hox in motion: tracking HoxA cluster conformation during differentiation.

Rousseau M, Crutchley JL, Miura H, Suderman M, Blanchette M, Dostie J.

Nucleic Acids Res. 2014 Feb;42(3):1524-40. doi: 10.1093/nar/gkt998. Epub 2013 Oct 29.

25.

A polymer model explains the complexity of large-scale chromatin folding.

Barbieri M, Fraser J, Lavitas LM, Chotalia M, Dostie J, Pombo A, Nicodemi M.

Nucleus. 2013 Jul-Aug;4(4):267-73. doi: 10.4161/nucl.25432. Epub 2013 Jun 19.

26.

A model of the large-scale organization of chromatin.

Barbieri M, Chotalia M, Fraser J, Lavitas LM, Dostie J, Pombo A, Nicodemi M.

Biochem Soc Trans. 2013 Apr;41(2):508-12. doi: 10.1042/BST20120238. Review.

PMID:
23514144
27.

From cells to chromatin: capturing snapshots of genome organization with 5C technology.

Ferraiuolo MA, Sanyal A, Naumova N, Dekker J, Dostie J.

Methods. 2012 Nov;58(3):255-67. doi: 10.1016/j.ymeth.2012.10.011. Epub 2012 Nov 5.

28.

Complexity of chromatin folding is captured by the strings and binders switch model.

Barbieri M, Chotalia M, Fraser J, Lavitas LM, Dostie J, Pombo A, Nicodemi M.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16173-8. doi: 10.1073/pnas.1204799109. Epub 2012 Sep 17.

29.

A Torrent of data: mapping chromatin organization using 5C and high-throughput sequencing.

Fraser J, Ethier SD, Miura H, Dostie J.

Methods Enzymol. 2012;513:113-41. doi: 10.1016/B978-0-12-391938-0.00005-7.

PMID:
22929767
30.

Chromosome organization in the nucleus - charting new territory across the Hi-Cs.

Dostie J, Bickmore WA.

Curr Opin Genet Dev. 2012 Apr;22(2):125-31. doi: 10.1016/j.gde.2011.12.006. Epub 2012 Jan 19. Review.

PMID:
22265226
31.

p53 inhibits angiogenesis by inducing the production of Arresten.

Assadian S, El-Assaad W, Wang XQ, Gannon PO, Barrès V, Latour M, Mes-Masson AM, Saad F, Sado Y, Dostie J, Teodoro JG.

Cancer Res. 2012 Mar 1;72(5):1270-9. doi: 10.1158/0008-5472.CAN-11-2348. Epub 2012 Jan 17.

32.

Discovering genome regulation with 3C and 3C-related technologies.

Ethier SD, Miura H, Dostie J.

Biochim Biophys Acta. 2012 May;1819(5):401-10. doi: 10.1016/j.bbagrm.2011.12.004. Epub 2011 Dec 20. Review.

PMID:
22207201
33.

Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling.

Rousseau M, Fraser J, Ferraiuolo MA, Dostie J, Blanchette M.

BMC Bioinformatics. 2011 Oct 25;12:414. doi: 10.1186/1471-2105-12-414.

34.

Shaping the Genome with Non-Coding RNAs.

Wang XQ, Crutchley JL, Dostie J.

Curr Genomics. 2011 Aug;12(5):307-21. doi: 10.2174/138920211796429772.

35.

Computing chromosome conformation.

Fraser J, Rousseau M, Blanchette M, Dostie J.

Methods Mol Biol. 2010;674:251-68. doi: 10.1007/978-1-60761-854-6_16.

PMID:
20827597
36.

Chromatin conformation signatures: ideal human disease biomarkers?

Crutchley JL, Wang XQ, Ferraiuolo MA, Dostie J.

Biomark Med. 2010 Aug;4(4):611-29. doi: 10.2217/bmm.10.68. Review.

37.

The three-dimensional architecture of Hox cluster silencing.

Ferraiuolo MA, Rousseau M, Miyamoto C, Shenker S, Wang XQ, Nadler M, Blanchette M, Dostie J.

Nucleic Acids Res. 2010 Nov;38(21):7472-84. doi: 10.1093/nar/gkq644. Epub 2010 Jul 25.

38.

Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening.

D'haene B, Attanasio C, Beysen D, Dostie J, Lemire E, Bouchard P, Field M, Jones K, Lorenz B, Menten B, Buysse K, Pattyn F, Friedli M, Ucla C, Rossier C, Wyss C, Speleman F, De Paepe A, Dekker J, Antonarakis SE, De Baere E.

PLoS Genet. 2009 Jun;5(6):e1000522. doi: 10.1371/journal.pgen.1000522. Epub 2009 Jun 19.

39.

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

FANTOM Consortium, Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, Kanamori-Katayama M, Kubosaki A, Akalin A, Ando Y, Arner E, Asada M, Asahara H, Bailey T, Bajic VB, Bauer D, Beckhouse AG, Bertin N, Björkegren J, Brombacher F, Bulger E, Chalk AM, Chiba J, Cloonan N, Dawe A, Dostie J, Engström PG, Essack M, Faulkner GJ, Fink JL, Fredman D, Fujimori K, Furuno M, Gojobori T, Gough J, Grimmond SM, Gustafsson M, Hashimoto M, Hashimoto T, Hatakeyama M, Heinzel S, Hide W, Hofmann O, Hörnquist M, Huminiecki L, Ikeo K, Imamoto N, Inoue S, Inoue Y, Ishihara R, Iwayanagi T, Jacobsen A, Kaur M, Kawaji H, Kerr MC, Kimura R, Kimura S, Kimura Y, Kitano H, Koga H, Kojima T, Kondo S, Konno T, Krogh A, Kruger A, Kumar A, Lenhard B, Lennartsson A, Lindow M, Lizio M, Macpherson C, Maeda N, Maher CA, Maqungo M, Mar J, Matigian NA, Matsuda H, Mattick JS, Meier S, Miyamoto S, Miyamoto-Sato E, Nakabayashi K, Nakachi Y, Nakano M, Nygaard S, Okayama T, Okazaki Y, Okuda-Yabukami H, Orlando V, Otomo J, Pachkov M, Petrovsky N, Plessy C, Quackenbush J, Radovanovic A, Rehli M, Saito R, Sandelin A, Schmeier S, Schönbach C, Schwartz AS, Semple CA, Sera M, Severin J, Shirahige K, Simons C, St Laurent G, Suzuki M, Suzuki T, Sweet MJ, Taft RJ, Takeda S, Takenaka Y, Tan K, Taylor MS, Teasdale RD, Tegnér J, Teichmann S, Valen E, Wahlestedt C, Waki K, Waterhouse A, Wells CA, Winther O, Wu L, Yamaguchi K, Yanagawa H, Yasuda J, Zavolan M, Hume DA; Riken Omics Science Center, Arakawa T, Fukuda S, Imamura K, Kai C, Kaiho A, Kawashima T, Kawazu C, Kitazume Y, Kojima M, Miura H, Murakami K, Murata M, Ninomiya N, Nishiyori H, Noma S, Ogawa C, Sano T, Simon C, Tagami M, Takahashi Y, Kawai J, Hayashizaki Y.

Nat Genet. 2009 May;41(5):553-62. doi: 10.1038/ng.375. Epub 2009 Apr 19.

40.

Chromatin conformation signatures of cellular differentiation.

Fraser J, Rousseau M, Shenker S, Ferraiuolo MA, Hayashizaki Y, Blanchette M, Dostie J.

Genome Biol. 2009;10(4):R37. doi: 10.1186/gb-2009-10-4-r37. Epub 2009 Apr 19.

41.

Chromosome conformation capture carbon copy technology.

Dostie J, Zhan Y, Dekker J.

Curr Protoc Mol Biol. 2007 Oct;Chapter 21:Unit 21.14. doi: 10.1002/0471142727.mb2114s80.

PMID:
18265398
42.

Mapping chromatin interactions by chromosome conformation capture.

Miele A, Gheldof N, Tabuchi TM, Dostie J, Dekker J.

Curr Protoc Mol Biol. 2006 May;Chapter 21:Unit 21.11. doi: 10.1002/0471142727.mb2111s74.

PMID:
18265379
43.
44.

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.

Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, Honan TA, Rubio ED, Krumm A, Lamb J, Nusbaum C, Green RD, Dekker J.

Genome Res. 2006 Oct;16(10):1299-309. Epub 2006 Sep 5.

45.

Gene expression during acute and prolonged hypoxia is regulated by distinct mechanisms of translational control.

Koritzinsky M, Magagnin MG, van den Beucken T, Seigneuric R, Savelkouls K, Dostie J, Pyronnet S, Kaufman RJ, Weppler SA, Voncken JW, Lambin P, Koumenis C, Sonenberg N, Wouters BG.

EMBO J. 2006 Mar 8;25(5):1114-25. Epub 2006 Feb 9.

46.

A role for the eIF4E-binding protein 4E-T in P-body formation and mRNA decay.

Ferraiuolo MA, Basak S, Dostie J, Murray EL, Schoenberg DR, Sonenberg N.

J Cell Biol. 2005 Sep 12;170(6):913-24. Erratum in: J Cell Biol. 2005 Oct 10;171(1):175.

47.

The Gemin6-Gemin7 heterodimer from the survival of motor neurons complex has an Sm protein-like structure.

Ma Y, Dostie J, Dreyfuss G, Van Duyne GD.

Structure. 2005 Jun;13(6):883-92.

48.

Gemins modulate the expression and activity of the SMN complex.

Feng W, Gubitz AK, Wan L, Battle DJ, Dostie J, Golembe TJ, Dreyfuss G.

Hum Mol Genet. 2005 Jun 15;14(12):1605-11. Epub 2005 Apr 20.

PMID:
15843395
49.

eIF4A3 is a novel component of the exon junction complex.

Chan CC, Dostie J, Diem MD, Feng W, Mann M, Rappsilber J, Dreyfuss G.

RNA. 2004 Feb;10(2):200-9.

50.

Numerous microRNPs in neuronal cells containing novel microRNAs.

Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G.

RNA. 2003 Feb;9(2):180-6. Erratum in: RNA. 2003 May;9(5):631-2.

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